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Mining High Quality Medical Phrase from Biomedical Literatures Over Academic Search Engine

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Advances in Intelligent Information Hiding and Multimedia Signal Processing

Part of the book series: Smart Innovation, Systems and Technologies ((SIST,volume 156))

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Abstract

Evidence-based medicine (EBM) is an inevitable trend in the development of medicine. It effectively improves treatment effect of diseases through combing clinical experience, medical acknowledge, and individualized biological information of patients. The biomedical literature, as the important medical acknowledge source of EBM, could help to discover comorbidity or disease progression patterns. However, due to the strong professionalism of biomedical literature, compared with the general language, the extracted medical phrases have semantic ambiguity problems. Therefore, we propose the high quality medical phrase mining approach (HQMP) for reducing the overdependence on frequency of multiple phrase evaluation and eliminating the semantic ambiguity of bilateral expansion of phrase boundaries. We use the proposed approach to analyze the pathogeny, diagnoses, and treatments of ophthalmopathy with central retinal vein occlusion (CRVO) and glaucoma, and demonstrate the diagnostic frequent disease co-occurrence and sequence patterns mined from medical literatures, to improve the credibility of evidence-based medicine for prevention and treatment of diseases. The experimental results show that HQMP not only improves the quality of medical phrases effectively, but also has fast performance.

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References

  1. Sun, Y., Yong, L., Peng, Z., Wu, H., Hou, X., Ren, Z., Li, X., Zhao, M.: Anti-vegf treatment is the key strategy for neovascular glaucoma management in the short term. BMC Ophthalmol. 16, 150–158 (2016). https://doi.org/10.1186/s12886-016-0327-9

    Article  Google Scholar 

  2. Liu, J., Shang, J., Wang, C., Ren, X., Han, J.: In Mining quality phrases from massive text corpora. In: ACM Sigmod International Conference on Management of Data, p. 1729 (2015). https://doi.org/10.1145/2723372.2751523

  3. Duan, Z., Liu, G.S.: Method of Building User Profile Based on Textrank. Computer Technology & Development (2015)

    Google Scholar 

  4. Balikas, G., Amini, M.R.: An empirical study on large scale text classification with skip-gram embeddings (2016). https://doi.org/10.1145/1235

  5. Wołk, K., Marasek, K.: Neural-based machine translation for medical text domain. Based on european medicines agency leaflet texts ☆. Procedia Comput. Sci. 64, 2–9 (2015). https://doi.org/10.1016/j.procs.2015.08.456

    Article  Google Scholar 

  6. Ford, E., Carroll, J.A., Smith, H.E., Scott, D., Cassell, J.A.: Extracting information from the text of electronic medical records to improve case detection: a systematic review. J. Am. Med. Inform. Assoc. 23, 1007–1015 (2016). https://doi.org/10.1093/jamia/ocv180

    Article  Google Scholar 

  7. Chan, K., Willan, A., Gupta, M., Pullenayegum, E.: Prm199–underestimation of uncertainties in health utilities dervied from mapping algorithms involving health-related quality of life measures: Statistical explanations and potential remedies. Med. Decis. Mak. Int. J. Soc. Med. Decis. Mak. 34, 863–872 (2014). https://doi.org/10.1177/0272989x13517750

    Article  Google Scholar 

  8. Pirracchio, R., Yue, J.K., Manley, G.T., Mj, V.D.L., Hubbard, A.E.: Collaborative targeted maximum likelihood estimation for variable importance measure: Illustration for functional outcome prediction in mild traumatic brain injuries. Statist. Methods Med. Res. 27, 286–297 (2016). https://doi.org/10.1177/0962280215627335

    Article  MathSciNet  Google Scholar 

  9. Arnold, L.D., Braganza, M., Salih, R., Colditz, G.A.: Statistical trends in the journal of the american medical association and implications for training across the continuum of medical education. Plos One 8, e77301 (2013). https://doi.org/10.1371/journal.pone.0077301

    Article  Google Scholar 

  10. Tsatsaronis, G., Balikas, G., Malakasiotis, P., Partalas, I., Zschunke, M., Alvers, M.R., Weissenborn, D., Krithara, A., Petridis, S., Polychronopoulos, D.: An overview of the bioasq large-scale biomedical semantic indexing and question answering competition. BMC Bioinform. 16, 138–165 (2015). https://doi.org/10.1186/s12859-015-0564-6

    Article  Google Scholar 

  11. Rastegar-Mojarad, M., Ye, Z., Wall, D., Murali, N., Lin, S.: Collecting and analyzing patient experiences of health care from social media 4(3), 78–86 (2015). https://doi.org/10.2196/resprot.3433

    Article  Google Scholar 

  12. Fan, J., Prasad, R., Yabut, R.M., Loomis, R.M., Zisook, D.S., Mattison, J.E., Huang, Y.: Part-of-speech tagging for clinical text: wall or bridge between institutions? In: AMIA Annual Symposium proceedings. AMIA Symposium 2011, p. 382 (2011)

    Google Scholar 

  13. Choi, W., Lee, J.K., Findikoglu, A.T.: Heuristic sample selection to minimize reference standard training set for a part-of-speech tagger. J. Am. Med. Inform. Assoc. 14, 641–650 (2007). https://doi.org/10.1197/jamia.m2392

    Article  Google Scholar 

  14. Jain, N.L., Knirsch, C.A., Friedman, C., Hripcsak, G.: Identification of suspected tuberculosis patients based on natural language processing of chest radiograph reports. In: Proceedings AMIA Annual Fall Symposium 1996, pp. 542–546 (1996)

    Google Scholar 

  15. Association, A.D.: 3. Comprehensive medical evaluation and assessment of comorbidities. Diabetes Care 40, S25–S32 (2017). https://doi.org/10.2337/dc17-s006

  16. Abrishami, M., Hashemi, B., Abrishami, M., Abnous, K., Razaviazarkhiavi, K., Behravan, J.: Pcr detection and identification of bacterial contaminants in ocular samples from post-operative endophthalmitis. J. Clin. Diagn. Res. JCDR 9, 01–03 (2015). https://doi.org/10.7860/jcdr/2015/10291.5733

    Article  Google Scholar 

  17. Rothery, C., Claxton, K., Palmer, S., Epstein, D., Tarricone, R., Sculpher, M.: Characterising uncertainty in the assessment of medical devices and determining future research needs. Health Econ. 26, 109–123 (2017). https://doi.org/10.1002/hec.3467

    Article  Google Scholar 

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Acknowledgements

This work was supported by National Natural Science Foundation of China (No. 61701104).

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Correspondence to Tie Hua Zhou .

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Wang, L., Gao, X., Zhou, T.H., Liu, W.Q., Sun, C.H. (2020). Mining High Quality Medical Phrase from Biomedical Literatures Over Academic Search Engine. In: Pan, JS., Li, J., Tsai, PW., Jain, L. (eds) Advances in Intelligent Information Hiding and Multimedia Signal Processing. Smart Innovation, Systems and Technologies, vol 156. Springer, Singapore. https://doi.org/10.1007/978-981-13-9714-1_31

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