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Genomics and Molecular Mechanisms of Plant’s Response to Abiotic and Biotic Stresses

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Plant Biotechnology: Progress in Genomic Era

Abstract

Previous two to three decades have witnessed Abiotic (temperature, light, water, salt etc.) and Biotic (bacteria, fungi, viruses etc.) stresses in crop plants to be increasing and documented as a severe menace to global food security, making it hard for the plants to endure in such circumstances. With the fast-growing population, it is now mandatory to pace with the yield and productivity accordingly, thus protection of crop plants from the abiotic and biotic stresses is a priority. The expansion of stress-tolerant crops will be significantly profitable for the poor farmers in regions of the globe that are affected by such stresses. Similarly, a number of transcription factors/regulators play crucial roles in plant stress responses. This chapter emphasizes on the genes involved in plant’s response to abiotic and biotic stresses with their molecular mechanisms to summarize the current knowledge and a step further for their better understanding. Such genes need to be properly utilized to generate resistant crop plants for future generations.

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References

  • Agrawal, G. K., Rakwal, R., & Iwahashi, H. (2002). Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues. Biochemical and Biophysical Research Communications, 294, 1009–1016.

    Article  CAS  PubMed  Google Scholar 

  • Ainsworth, E. A., Rogers, A., & Leakey, A. D. B. (2008). Targets for crop biotechnology in a future high-CO2 and high-O3 world. Plant Physiology, 147, 13–19.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Alfano, J. R., & Collmer, A. (1996). Bacterial pathogens in plants: Life up against the Wall. The Plant Cell, 8, 1683–1698.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Algar, W. R., & Krull, U. J. (2008). Quantum dots as donors in fluorescence resonance energy transfer for the bioanalysis of nucleic acids, proteins, and other biological molecules. Analytical and Bioanalytical Chemistry, 391(5), 1609–1618.

    Article  CAS  PubMed  Google Scholar 

  • Aslani, F., Bagheri, S., MuhdJulkapli, N., Juraimi, A. S., Hashemi, F. S. G., & Baghdadi, A. (2014). Effects of engineered nanomaterials on plants growth: An overview. The Scientific World Journal, 2014, 1–28.

    Article  CAS  Google Scholar 

  • Barnes, J. D., & Davison, A. W. (1988). The influence of ozone on the winter hardiness of Norway Spruce [Piceaabies (L) Karst]. The New Phytologist, 108, 159–166.

    Article  CAS  PubMed  Google Scholar 

  • Belisario, A., Maccaroni, M., Corazza, L., Balmas, V., & Valier, A. (2002). Occurrence and etiology of brown apical necrosis on Persian (English) walnut fruit. Plant Disease, 86, 599–602.

    Article  CAS  PubMed  Google Scholar 

  • Bender, C. L., Alarcón-Chaidez, F., & Gross, D. C. (1999). Pseudomonas syringae phytotoxins: Mode of action, regulation, and biosynthesis by peptide and polyketide synthetases. Microbiology and Molecular Biology Reviews: MMBR, 63(2), 266–292.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Besant, P. G., Tan, E., & Attwood, P. V. (2003). Mammalian protein histidine kinases. The International Journal of Biochemistry & Cell Biology, 35(3), 297–309.

    Article  CAS  Google Scholar 

  • Blumwald, E. (2000). Sodium transport and salt tolerance in plants. Current Opinion in Cell Biology, 12(4), 431–434.

    Article  CAS  PubMed  Google Scholar 

  • Bowler, C., & Fluhr, R. (2000). The role of calcium and activated oxygens as signals for controlling cross-tolerance. Trends in Plant Science, 5, 241–246.

    Article  CAS  PubMed  Google Scholar 

  • Bray, E. A. (2004). Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. Journal of Experimental Botany, 55, 2331–2341.

    Article  CAS  PubMed  Google Scholar 

  • Bray, E. A., Bailey-Serres, J., & Weretilnyk, E. (2000). Responses to abiotic stresses. In W. Gruissem, B. Buchannan, & R. Jones (Eds.), Biochemistry and molecular biology of plants (pp. 1158–1249). Rockville: American Society of Plant Physiologists.

    Google Scholar 

  • Brouder, S. M., & Volenec, J. J. (2008). Impact of climate change on crop nutrient and water use efficiencies. Physiologia Plantarum, 133, 705–724.

    Article  CAS  PubMed  Google Scholar 

  • Busemeyer, L., Mentrup, D., Möller, K., Wunder, E., Alheit, K., Hahn, V., Maurer, H., Reif, J., Würschum, T., Müller, J., Rahe, F., & Ruckelshausen, A. (2013). BreedVision – A multi-sensor platform for non-destructive field-based phenotyping in plant breeding. Sensors, 13(3), 2830–2847.

    Article  PubMed  PubMed Central  Google Scholar 

  • Carrari, F., Fernie, A. R., & Iusem, N. D. (2004). Heard it through the grapevine? ABA and sugar cross-talk: The ASR story. Trends in Plant Science, 9(2), 57–59.

    Article  CAS  PubMed  Google Scholar 

  • Casadevall, A., & Pirofski, L. A. (1999). Host-pathogen interactions: Redefining the basic concepts of virulence and pathogenicity. Infection and Immunity, 67(8), 3703–3713.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Chandra Babu, R., Zhang, J., Blum, A., David Ho, T. H., Wu, R., & Nguyen, H. (2004). HVA1, a LEA gene from barley confers dehydration tolerance in transgenic rice (Oryza sativa L.) via cell membrane protection. Plant Science, 166(4), 855–862.

    Article  CAS  Google Scholar 

  • Cho, U. H., & Seo, N. H. (2005). Oxidative stress in Arabidopsis thaliana exposed to cadmium is due to hydrogen peroxide accumulation. Plant Science, 168(1), 113–120.

    Article  CAS  Google Scholar 

  • Collmer, A., Lindeberg, M., Petnicki-Ocwieja, T., Schneider, D. J., & Alfano, J. R. (2002). Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors. Trends in Microbiology, 10(10), 462–469.

    Article  CAS  PubMed  Google Scholar 

  • Cordes, R. C., & Bauman, T. T. (1984). Field competition between ivy leaf morning glory (Ipomoea hederacea) and soybeans (Glycine max). Weed Science, 32, 364–370.

    Article  Google Scholar 

  • Das, S., Marwal, A., Choudhary, D. K., Gupta, V. K., & Gaur, R. K. (2011). Mechanism of RNA interference (RNAi): Current concept. International Proceedings of Chemical, Biological & Environmental Engineering, 9, 240–245. ISSN: 2010-4618.

    Google Scholar 

  • Das, A. K., Marwal, A., & Sain, D. (2014a). One-step green synthesis and characterization of flower extract-mediated mercuric oxide (HgO) nanoparticles from Callistemon viminalis. Research and Reviews: Journal of Pharmaceutics and Nanotechnology, 2(2), 25–28.

    Google Scholar 

  • Das, A. K., Marwal, A., & Verma, R. (2014b). Bio-reductive synthesis and characterization of plant protein coated magnetite nanoparticles. Nano Hybridsand Composites, 7, 69–86.

    Google Scholar 

  • Das, A. K., Marwal, A., & Verma, R. (2014c). Datura inoxia leaf extract mediated one step green synthesis and characterization of magnetite (Fe3O4) nanoparticles. Research and Reviews: Journal of Pharmaceutics and Nanotechnology, 2(2), 21–24.

    CAS  Google Scholar 

  • Das, A. K., Marwal, A., Sain, D., & Pareek, V. (2015). One-step green synthesis and characterization of plant protein-coated mercuric oxide (HgO) nanoparticles: Antimicrobial studies. International Nano Letters, 5(3), 125–132.

    Article  CAS  Google Scholar 

  • Dean, R., Van Kan, J. A. L., Pretorius, Z. A., Hammond-Kosack, K. E., Di Pietro, A., Spanu, P. D., Rudd, J. J., Dickman, M., Kahmann, R., Ellis, J., & Foster, G. D. (2012). The top 10 fungal pathogens in molecular plant pathology: Top 10 fungal pathogens. Molecular Plant Pathology, 13(4), 414–430.

    Article  PubMed  PubMed Central  Google Scholar 

  • Dewey, R. E., Siedow, J. N., Timothy, D. H., & Levings, C. S. (1988). A 13-kilodalton maize mitochondrial protein in E. coli confers sensitivity to Bipolaris maydis toxin. Science (New York, N.Y.), 239(4837), 293–295.

    Article  CAS  Google Scholar 

  • Ding, Y., Liu, N., Virlouvet, L., Riethoven, J. J., Fromm, M., & Avramova, Z. (2013). Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biology, 13(1), 229.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T., Shimatani, Z., et al. (2004). Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes & Development, 18, 926–936.

    Article  CAS  Google Scholar 

  • Du, L., Jiao, F., Chu, J., Jin, G., Chen, M., & Wu, P. (2007). The two-component signal system in rice (Oryza sativa L.): A genome-wide study of cytokinin signal perception and transduction. Genomics, 89(6), 697–707.

    Article  CAS  PubMed  Google Scholar 

  • El-Ramady, H., Alshaal, T., Elhawat, N., et al. (2018). Plant nutrients and their roles under saline soil conditions. In Plant nutrients and abiotic stress tolerance (pp. 297–324). Singapore: Springer.

    Google Scholar 

  • Falkow, S. (1990). The “zen” of bacterial pathogenicity. In B. H. Iglewski & V. L. Clark (Eds.), Molecular basis of bacterial pathogenesis (pp. 3–9). San Diego: Academic.

    Google Scholar 

  • Feregrino-Perez, A. A., Magaña-López, E., Guzmán, C., & Esquivel, K. (2018). A general overview of the benefits and possible negative effects of the nanotechnology in horticulture. Scientia Horticulturae, 238, 126–137.

    Article  Google Scholar 

  • Fraire-Velázquez, S., Rodríguez-Guerra, R., & Sánchez-Calderón, L. (2011). Abiotic and biotic stress response crosstalk in plants. In R. Rodríguez-Guerra (Ed.), Abiotic stress response in plants. Rijeka: IntechOpen. p.Ch. 1.

    Google Scholar 

  • Frank, W. (2000). Water deficit triggers phospholipase D activity in the resurrection plant Craterostigmaplantagineum. The Plant Cell Online, 12(1), 111–124.

    Article  CAS  Google Scholar 

  • Frasco, M., & Chaniotakis, N. (2009). Semiconductor quantum dots in chemical sensors and biosensors. Sensors, 9(9), 7266–7286.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fujita, M., Fujita, Y., Noutoshi, Y., Takahashi, F., Narusaka, Y., Yamaguchi-Shinozaki, K., & Shinozaki, K. (2006). Crosstalk between abiotic and biotic stress responses: A current view from the points of convergence in the stress signaling networks. Current Opinion in Plant Biology, 9(4), 436–442.

    Article  PubMed  Google Scholar 

  • Gaur, R. K., Prajapat, R., Marwal, A., Sahu, A., & Rathore, M. S. (2012). First report of a Begomovirus infecting Mimosa pudica in India. Journal of Plant Pathology, 93(4), S4.80. Available at: http://www.sipav.org/main/jpp/index.php/jpp/article/view/2394.

    Google Scholar 

  • Giraud, E., Ho, L. H., Clifton, R., Carroll, A., Estavillo, G., Tan, Y. F., Howell, K. A., Ivanova, A., Pogson, B. J., Millar, A. H., et al. (2008). The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. Plant Physiology, 147, 595–610.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Goodman, R. N., & Novacky, A. J. (1994). The hypersensitive reaction in plants to pathogens: A resistance phenomenon. St Paul: American Phytopathological Society (APS).

    Google Scholar 

  • Guerriero, G., & Cai, G. (2018). Interaction of Nano-sized nutrients with plant biomass: A review. In M. Faisal, Q. Saquib, A. Alatar, & A. Al-Khedhairy (Eds.), Phytotoxicity of nanoparticles (pp. 135–149). Cham: Springer.

    Chapter  Google Scholar 

  • Haghjou, M. M., Shariati, M., & Smirnoff, N. (2009). The effect of acute high light and low temperature stresses on the ascorbate–glutathione cycle and superoxide dismutase activity in two Dunaliellasalina strains. Physiologia Plantarum, 135, 272–280.

    Article  CAS  PubMed  Google Scholar 

  • Halford, N. G., & Hey, S. J. (2009). Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants. Biochemical Journal, 419(2), 247–259.

    Article  CAS  PubMed  Google Scholar 

  • Hewezi, T., Leger, M., & Gentzbittel, L. (2008). A comprehensive analysis of the combined effects of high light and high temperature stresses on gene expression in sunflower. Annals of Botany, 102, 127–140.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Huang, H. J., Fu, S. F., Tai, Y. H., Chou, W. C., & Huang, D. D. (2002). Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive. Physiologia Plantarum, 114(4), 572–580.

    Article  CAS  PubMed  Google Scholar 

  • Hwang, Y. S. (2005). A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function. Plant Physiology, 138(3), 1347–1358.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hwang, I., & Sheen, J. (2001). Two-component circuitry in Arabidopsis cytokinin signal transduction. Nature, 413, 383.

    Article  CAS  PubMed  Google Scholar 

  • Iyer, N. J., Tang, Y., & Mahalingam, R. (2013). Physiological, biochemical and molecular responses to a combination of drought and ozone in Medicago truncatula. Plant, Cell & Environment, 36, 706–720.

    Article  CAS  Google Scholar 

  • Janda, J. M., & Abbott, S. L. (2010). The genus aeromonas: Taxonomy, pathogenicity, and infection. Clinical Microbiology Reviews, 23(1), 35–73.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Joo, J., Lee, Y. H., Kim, Y.-K., Nahm, B. H., & Song, S. I. (2013). Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue dependent sugar and hormone-sensitivities. Molecules and Cells, 35(5), 421–435.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kasurinen, A., Biasi, C., Holopainen, T., Rousi, M., Maenpaa, M., & Oksanen, E. (2012). Interactive effects of elevated ozone and temperature on carbon allocation of silver birch (Betula pendula) genotypes in an open-air field exposure. Tree Physiology, 32, 737–751.

    Article  CAS  PubMed  Google Scholar 

  • Katou, S., Kuroda, K., Seo, S., Yanagawa, Y., Tsuge, T., Yamazaki, M., Miyao, A., Hirochika, H., & Ohashi, Y. (2007). A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice. Plant and Cell Physiology, 48(2), 332–344.

    Article  CAS  PubMed  Google Scholar 

  • Khodakovskaya, M., Dervishi, E., Mahmood, M., Xu, Y., Li, Z., Watanabe, F., & Biris, A. S. (2009). Carbon nanotubes are able to penetrate plant seed coat and dramatically affect seed germination and plant growth. ACS Nano, 3(10), 3221–3227.

    Google Scholar 

  • Khurana, S. M. P., & Marwal, A. (2016). Recent developments towards detection & diagnosis for management of plant viruses. Indian Phytopathology, 69(4s), 30–34.

    Google Scholar 

  • Kiba, T., Yamada, H., Sato, S., Kato, T., Tabata, S., Yamashino, T., & Mizuno, T. (2003). The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin-mediated signal transduction in Arabidopsis thaliana. Plant & Cell Physiology, 44(8), 868–874.

    Article  CAS  Google Scholar 

  • Klement, Z. (1982). Hypersensitivity. In M. S. Mount & G. H. Lacy (Eds.), Phytopathogenic prokaryotes (Vol. 2, pp. 149–177). New York: Academic.

    Chapter  Google Scholar 

  • Kono, Y., Takeuchi, S., Kawarada, A., Daly, J., & Knoche, H. (1981). Studies on the host specific phytotoxins produced in minor amounts by Helminthosporium maydis, race T. Bioorganic Chemistry, 10, 206–218.

    Article  CAS  Google Scholar 

  • Laloi, C., Apel, K., & Danon, A. (2004). Reactive oxygen signalling: The latest news. Current Opinion in Plant Biology, 7(3), 323–328.

    Article  CAS  PubMed  Google Scholar 

  • Levings, C. S., & Siedow, J. N. (1992). Molecular basis of disease susceptibility in the Texas cytoplasm of maize. In R. A. Schilperoort & L. Dure (Eds.), 10 years plant molecular biology (pp. 135–147). Dordrecht: Springer.

    Chapter  Google Scholar 

  • Liu, J. (2000). The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance. Proceedings of the National Academy of Sciences, 97(7), 3730–3734.

    Article  CAS  Google Scholar 

  • Liu, J., & Zhu, J. K. (1998). A calcium sensor homolog required for plant salt tolerance. Science (New York, N.Y.), 280(5371), 1943–1945.

    Article  CAS  Google Scholar 

  • Loreto, F., & Bongi, G. (1989). Combined low temperature-high light effect on gas-exchange properties of jojoba leaves. Plant Physiology, 91, 1580–1585.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ludwig, A., Romeis, T., & Jones, J. D. (2004). CDPK mediated signalling pathways: Specificity and cross-talk. Journal of Experimental Botany, 55, 181–188.

    Article  CAS  PubMed  Google Scholar 

  • Ma, X., & Yan, J. (2018). Plant uptake and accumulation of engineered metallic nanoparticles from lab to field conditions. Current Opinion in Environmental Science & Health, 6, 16–20.

    Article  Google Scholar 

  • Mahajan-Miklos, S., Tan, M. W., Rahme, L. G., & Ausubel, F. M. (1999). Molecular mechanisms of bacterial virulence elucidated using a Pseudomonas aeruginosa-Caenorhabditis elegans pathogenesis model. Cell, 96(1), 47–56.

    Article  CAS  PubMed  Google Scholar 

  • Mahmood, S., Lakra, N., Marwal, A., Sudheep, N. M., & Anwar, K. (2017). Crop genetic engineering: An approach to improve fungal resistance in plant system. In: D. P. Singh, H. B. Singh, & R. Prabha (Eds.), Plant-microbe interactions in agro-ecological perspectives (pp. 581–591). Available at: http://link.springer.com/10.1007/978-981-10-6593-4_23. ISBN: 978-981-10-5812-7.

  • Mansfield, J., Genin, S., Magori, S., Citovsky, V., Sriariyanum, M., Ronald, P., Dow, M., Verdier, V., Beer, S. V., Machado, M. A., Toth, I., Salmond, G., & Foster, G. D. (2012). Top 10 plant pathogenic bacteria in molecular plant pathology: Top 10 plant pathogenic bacteria. Molecular Plant Pathology, 13(6), 614–629.

    Article  PubMed  PubMed Central  Google Scholar 

  • Marwal, A., & Gaur, R. K. (2017). Understanding functional genomics of PTGS silencing mechanisms for Tobacco streak virus and other ilarviruses mediated by RNAi and VIGS. In: D. P. Singh, H. B. Singh, & R. Prabha (Eds.), Plant-microbe interactions in agro-ecological perspectives (Chapter 24. pp. 489–499). ISBN: 978-981-10-5812-7.

    Google Scholar 

  • Marwal, A., Prajapat, R., Sahu, A. K., & Gaur, R. K. (2012). Current status of geminivirus in India: RNAi technology, a challenging cure. Asian Journal of Biological Sciences, 5(6), 273–293.

    Article  CAS  Google Scholar 

  • Marwal, A., Kumar Sahu, A., & Gaur, R. K. (2013a). Molecular characterization of Begomoviruses and DNA satellites associated with a new host Spanish flag (Lantana camara) in India. ISRN Virology, 2013, 1–5. https://doi.org/10.5402/2013/915703.

  • Marwal, A., Sahu, A. K., Prajapat, R., Choudhary, D. K., & Gaur, R. K. (2013b). Molecular and recombinational characterization of Begomovirus infecting an ornamental plant Alternanthera sessilis: A new host of tomato leaf curl Kerala virus reported in India. Science International, 1(3), 51–56.

    Article  CAS  Google Scholar 

  • Marwal, A., Gaur, R. K., & Khurana, S. M. P. (2016). Chapter 11: RNAi mediated gene silencing against plant viruses. In P. Chowdappa, P. Sharma, D. Singh, & A. K. Misra (Eds.), Perspectives of plant pathology in genomic era (pp. 235–254). New Delhi: Today and Tomorrow’s Printers and Publishers. ISBN 10: 8170195268 ISBN 13: 9788170195269.

    Google Scholar 

  • Marwal, A., Mishra, M., Sekhsaria, C., & Gaur, R. K. (2017). Computational analysis and predicting ligand binding site in the rose leaf curl virus and its betasatellite proteins: A step forward for antiviral agent designing. In: S. Saxena, & A. K. Tiwari (Eds.), Begomoviruses: Occurrence and management in Asia and Africa (Chapter 9, pp. 157–168). ISBN: 978-981-10-5983-4.

    Google Scholar 

  • Masle, J., Gilmore, S. R., & Farquhar, G. D. (2005). The ERECTA gene regulates plant transpiration efficiency in Arabidopsis. Nature, 436(7052), 866–870.

    Article  CAS  PubMed  Google Scholar 

  • Medina, J., Bargues, M., Terol, J., Pérez-Alonso, M., & Salinas, J. (1999). The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiology, 119(2), 463–470.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mingfang, Q., Yufeng, L., & Tianlai, L. (2013). Nano-TiO2 improve the photosynthesis of tomato leaves under mild heat stress. Biological Trace Element Research, 156(1–3), 323–328.

    Google Scholar 

  • Mittler, R., & Blumwald, E. (2010). Genetic engineering for modern agriculture: Challenges and perspectives. Annual Review of Plant Biology, 61, 443–462.

    Article  CAS  PubMed  Google Scholar 

  • Moissiard, G., & Voinnet, O. (2004). Viral suppression of RNA silencing in plants. Molecular Plant Pathology, 5(1), 71–82.

    Article  CAS  PubMed  Google Scholar 

  • Nehra, C., Marwal, A., Verma, R. K., & Gaur, R. K. (2018). Molecular characterization of Begomoviruses DNA-A and associated beta satellites with new host Ocimum sanctum in India. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences. https://doi.org/10.1007/s40011-018-1006-9.

  • Pareek, A., Singh, A., Kumar, M., Kushwaha, H. R., Lynn, A. M., & Singla-Pareek, S. L. (2006). Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis. Plant Physiology, 142(2), 380–397.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Patterson, D. T., & Flint, E. P. (1979). Effects of chilling on cotton (Gossypium hirsutum), velvetleaf (Abutilon theophrasti), and spurred anoda (Anodacristata). Weed Science, 27, 473–479.

    Article  Google Scholar 

  • Perez-Lopez, U., Miranda-Apodaca, J., Munoz-Rueda, A., & Mena-Petite, A. (2013). Lettuce production and antioxidant capacity are differentially modified by salt stress and light intensity under ambient and elevated CO2. Journal of Plant Physiology, 170, 1517–1525.

    Article  CAS  PubMed  Google Scholar 

  • Petřivalský, M., Brauner, F., Luhová, L., Gagneul, D., & Šebela, M. (2007). Aminoaldehyde dehydrogenase activity during wound healing of mechanically injured pea seedlings. Journal of Plant Physiology, 164(11), 1410–1418.

    Article  CAS  PubMed  Google Scholar 

  • Prajapat, R., Gaur, R. K., & Marwal, A. (2011a). Homology modeling and docking studies between AC1 Rep protein of Begomovirus and whey a-lactalbumin. Asian Journal of Biological Sciences, 4(4), 352–361.

    Article  CAS  Google Scholar 

  • Prajapat, R., Marwal, A., Sahu, A., & Gaur, R. K. (2011b). Phylogenetics and in silico docking studies between coat protein of Mimosa yellow vein virus and whey cc-lactalbumin. American Journal of Biochemistry and Molecular Biology, 1(3), 265–274.

    Article  Google Scholar 

  • Prajapat, R., Marwal, A., Shaikh, Z., & Gaur, R. K. (2012). Geminivirus database (GVDB): First database of family Geminiviridae and its genera Begomovirus. Pakistan Journal of Biological Sciences, 15(14), 702–706.

    Article  PubMed  Google Scholar 

  • Prajapat, R., Marwal, A., & Jha, P. N. (2013). Erwinia carotovora associated with potato: A critical appraisal with respect to Indian perspective. International Journal of Current Microbiology and Applied Sciences, 2(10), 83–89.

    Google Scholar 

  • Prajapat, R., Marwal, A., & Gaur, R. K. (2014). Recognition of errors in the refinement and validation of three-dimensional structures of AC1 proteins of Begomovirus strains by using ProSA-Web. Journal of Viruses, 2014, 1–6. https://doi.org/10.1155/2014/752656.

    Article  Google Scholar 

  • Prasad, A., Kumar, A., Suzuki, M., Kikuchi, H., Sugai, T., Kobayashi, M., Pospíšil, P., Tada, M., & Kasai, S. (2015). Detection of hydrogen peroxide in Photosystem II (PSII) using catalytic amperometric biosensor. Frontiers in Plant Science, 6, 862.

    PubMed  PubMed Central  Google Scholar 

  • Prasch, C. M., & Sonnewald, U. (2013). Simultaneous application of heat, drought, and virus to Arabidopsis plants reveals significant shifts in signaling networks. Plant Physiology, 162, 1849–1866.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pruss, G., Ge, X., Shi, X. M., Carrington, J. C., & Bowman Vance, V. (1997). Plant viral synergism: The potyviral genome encodes a broad-range pathogenicity enhancer that transactivates replication of heterologous viruses. The Plant Cell, 9(6), 859–868.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rahme, L. G., Stevens, E. J., Wolfort, S. F., Shao, J., Tompkins, R. G., & Ausubel, F. M. (1995). Common virulence factors for bacterial pathogenicity in plants and animals. Science (New York, N.Y.), 268(5219), 1899–1902.

    Article  CAS  Google Scholar 

  • Rahme, L. G., Tan, M.-W., Le, L., Wong, S. M., Tompkins, R. G., Calderwood, S. B., & Ausubel, F. M. (1997). Use of model plant hosts to identify Pseudomonas aeruginosa virulence factors. Proceedings of the National Academy of Sciences, 94(24), 13245–13250.

    Article  CAS  Google Scholar 

  • Ray, S., Agarwal, P., Arora, R., Kapoor, S., & Tyagi, A. K. (2007). Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica). Molecular Genetics and Genomics, 278(5), 493–505.

    Article  CAS  PubMed  Google Scholar 

  • Riechmann, J. L., Heard, J., Martin, G., Reuber, L., Jiang, C., Keddie, J., Adam, L., Pineda, O., Ratcliffe, O. J., Samaha, R. R., Creelman, R., Pilgrim, M., Broun, P., Zhang, J. Z., Ghandehari, D., Sherman, B. K., & Yu, G. (2000). Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes. Science (New York, N.Y.), 290(5499), 2105–2110.

    Article  CAS  Google Scholar 

  • Rizhsky, L., Hongjian, L., & Mittler, R. (2002). The combined effect of drought stress and heat shock on gene expression in tobacco. Plant Physiology, 130(3), 1143–1151.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Romero, I., Fuertes, A., Benito, M. J., Malpica, J. M., Leyva, A., & Paz-Ares, J. (1998). More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. The Plant Journal: for Cell and Molecular Biology, 14(3), 273–284.

    Article  CAS  Google Scholar 

  • Ruiz, M. T., Voinnet, O., & Baulcombe, D. C. (1998). Initiation and maintenance of virus-induced gene silencing. The Plant Cell, 10(6), 937–946.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Safarpour, H., Safarnejad, M. R., Tabatabaei, M., Mohsenifar, A., Rad, F., Basirat, M., Shahryari, F., & Hasanzadeh, F. (2012). Development of a quantum dots FRET-based biosensor for efficient detection of Polymyxabetae. Canadian Journal of Plant Pathology, 34(4), 507–515.

    Article  Google Scholar 

  • Sahu, A. K., Marwal, A., Nehra, C., Choudhary, D. K., Sharma, P., & Gaur, R. K. (2014a). RNAi mediated gene silencing against betasatellite associated with Croton yellow vein mosaic Begomovirus. Molecular Biology Reports, 41(11), 7631–7638.

    Article  CAS  PubMed  Google Scholar 

  • Sahu, A. K., Marwal, A., Shahid, M. S., Nehra, C., & Gaur, R. K. (2014b). First report of a Begomovirus and associated betasatellite in Rosa indica and in India. Australasian Plant Disease Notes, 9, 147. https://doi.org/10.1007/s13314-014-0147-9.

    Article  Google Scholar 

  • Saijo, Y., Hata, S., Kyozuka, J., Shimamoto, K., & Izui, K. (2000). Over-expression of a single Ca2+−dependent protein kinase confers both cold and salt/drought tolerance on rice plants. The Plant Journal: for Cell and Molecular Biology, 23(3), 319–327.

    Article  CAS  Google Scholar 

  • Santos, C. S. C., Gabriel, B., Blanchy, M., Menes, O., García, D., Blanco, M., Arconada, N., & Neto, V. (2015). Industrial applications of nanoparticles – A prospective overview. Materials Today: Proceedings, 2(1), 456–465.

    Google Scholar 

  • Schafer, W. (1994). Molecular mechanisms of fungal pathogenicity to plants. Annual Review of Phytopathology, 32(1), 461–477.

    Article  Google Scholar 

  • Schafleitner, R., Gutierrez Rosales, R. O., Gaudin, A., Alvarado Aliaga, C. A., Martinez, G. N., Tincopa Marca, L. R., Bolivar, L. A., Delgado, F. M., Simon, R., & Bonierbale, M. (2007). Capturing candidate drought tolerance traits in two native Andean potato clones by transcription profiling of field grown plants under water stress. Plant Physiology and Biochemistry, 45(9), 673–690.

    Article  CAS  PubMed  Google Scholar 

  • Scheffer, N. P., Nelson, R. R., & Ullstrup, A. J. (1967). Inheritance of toxin production and pathogenicity in Cochlioboluscarbonum and Cochliobolusvictoriae. Phytopathology, 57, 1288–1291.

    Google Scholar 

  • Scholthof, K. B. G., Adkins, S., Czosnek, H., Palukaitis, P., Jacquot, E., Hohn, T., Hohn, B., Saunders, K., Candresse, T., Ahlquist, P., Hemenway, C., & Foster, G. D. (2011). Top 10 plant viruses in molecular plant pathology: Top 10 plant viruses. Molecular Plant Pathology, 12(9), 938–954.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shinozaki, K., & Shinozaki, Y. K. (2000). Molecular responses to dehydration and low temperature: Differences and cross-talk between two stress signaling pathways. Current Opinion in Plant Biology, 3(3), 217–223.

    Article  CAS  PubMed  Google Scholar 

  • Shinozaki, K., & Shinozaki, K. Y. (2006). Gene networks involved in drought stress response and tolerance. Journal of Experimental Botany, 58(2), 221–227.

    Article  PubMed  Google Scholar 

  • Shinwari, Z. K., Nakashima, K., Miura, S., Kasuga, M., Seki, M., Yamaguchi-Shinozaki, K., & Shinozaki, K. (1998). An arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochemical and Biophysical Research Communications, 250(1), 161–170.

    Article  CAS  PubMed  Google Scholar 

  • Shiraishi, T., Yamada, T., Ichinose, Y., Kiba, A., & Toyoda, K. (1997). The role of suppressors in determining host-parasite specificities in plant cells. In: International review of cytology (pp. 55–93). Elsevier.

    Google Scholar 

  • Shpak, E. D., Berthiaume, C. T., Hill, E. J., & Torii, K. U. (2004). Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation. Development, 131(7), 1491–1501.

    Article  CAS  PubMed  Google Scholar 

  • Song, F., & Goodman, R. (2002). OsBIMK1, a rice MAP kinase gene involved in disease resistance responses. Planta, 215(6), 997–1005.

    Article  CAS  PubMed  Google Scholar 

  • Spoel, S. H., & Dong, X. (2008). Making sense of hormone crosstalk during plant immune responses. Cell Host & Microbe, 3(6), 348–351.

    Article  CAS  Google Scholar 

  • Su, L., Dai, Z., Li, S., & Xin, H. (2015). A novel system for evaluating drought–cold tolerance of grapevines using chlorophyll fluorescence. BMC Plant Biology, 15, 82.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sudheep, N. M., Marwal, A., Lakra, N., Anwar, K., & Mahmood, S. (2017). Fascinating fungal endophytes role and possible beneficial applications: An overview. In D. P. Singh, H. B. Singh, & R. Prabha (Eds.), Plant-microbe interactions in agro-ecological perspectives (pp. 255–273). [online] Singapore: Springer. Available at: http://link.springer.com/10.1007/978-981-10-5813-4_13. ISBN: 978-981-10-5812-7. 255–273.

    Chapter  Google Scholar 

  • Szittya, G., Silhavy, D., Molnar, A., Havelda, Z., Lovas, A., Lakatos, L., Banfalvi, Z., & Burgyan, J. (2003). Low temperature inhibits RNA silencing-mediated defence by the control of siRNA generation. EMBO Journal, 22, 633–640.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Valerio, M., Lovelli, S., Perniola, M., Di Tommaso, T., & Ziska, L. (2013). The role of water availability on weed–crop interactions in processing tomato for southern Italy. Acta Agriculturae Scandinavica Section B: Soil and Plant Science, 63, 62–68.

    Article  Google Scholar 

  • Vance, V. B. (1991). Replication of potato virus X RNA is altered in coinfections with potato virus Y. Virology, 182(2), 486–494.

    Article  CAS  PubMed  Google Scholar 

  • VanEtten, H. D., Matthews, D. E., & Matthews, P. S. (1989). Phytoalexin detoxification: Importance for pathogenicity and practical implications. Annual Review of Phytopathology, 27(1), 143–164.

    Article  CAS  PubMed  Google Scholar 

  • Verma, A. S., & Singh, A. (Eds.). (2013). Animal biotechnology: Models in discovery and translation. Amsterdam: Elsevier/AP, Academic Press is an imprint of Elsevier. ISBN: 978-0-12-416002-6.

    Google Scholar 

  • Volpe, V., Dell’Aglio, E., Giovannetti, M., Ruberti, C., Costa, A., Genre, A., Guether, M., & Bonfante, P. (2013). An AM-induced, MYB -family gene of Lotus japonicus (LjMAMI) affects root growth in an AM-independent manner. The Plant Journal, 73(3), 442–455.

    Article  CAS  PubMed  Google Scholar 

  • von Bodman, S. B., Bauer, W. D., & Coplin, D. L. (2003). Quorum sensing in plant pathogenic bacteria. Annual Review of Phytopathology, 41(1), 455–482.

    Article  CAS  Google Scholar 

  • Walton, J. D., Earle, E. D., & Gibson, B. W. (1982). Purification and structure of the host-specific toxin from Helminthosporiumcarbonum race 1. Biochemical and Biophysical Research Communications, 107(3), 785–794.

    Article  CAS  PubMed  Google Scholar 

  • Wang, W. X., Barak, T., Vinocur, B., Shoseyov, O., & Altman, A. (2003). Abiotic resistance and chaperones: Possible physiological role of SP1, a stable and stabilizing protein from populus. In I. K. Vasil (Ed.), Plant biotechnology 2000 and beyond (pp. 439–443). Dordrecht: Kluwer.

    Chapter  Google Scholar 

  • Welfare, K., Yeo, A. R., & Flowers, T. J. (2002). Effects of salinity and ozone, individually and in combination, on the growth and ion contents of two chickpea (Cicerarietinum L.) varieties. Environmental Pollution, 120, 397–403.

    Article  CAS  PubMed  Google Scholar 

  • Wen, J. Q., Oono, K., & Imai, R. (2002). Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in Rice. Plant Physiology, 129(4), 1880–1891.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • White, J. C., & Gardea-Torresdey, J. (2018). Achieving food security through the very small. Nature Nanotechnology, 13, 627–629.

    Article  CAS  PubMed  Google Scholar 

  • Wolpert, T. J., Dunkle, L. D., & Ciuffetti, L. M. (2002). Host selective toxins and a virulence determinants: What’s in a name? Annual Review of Phytopathology, 40(1), 251–285.

    Article  CAS  PubMed  Google Scholar 

  • Wood, A. J., Saneoka, H., Rhodes, D., Joly, R. J., & Goldsbrough, P. B. (1996). Betaine aldehyde dehydrogenase in sorghum. Plant Physiology, 110(4), 1301–1308.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xiong, L., & Yang, Y. (2003). Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. The Plant Cell Online, 15(3), 745–759.

    Article  CAS  Google Scholar 

  • Yang, C. Y., Chen, Y. C., Jauh, G. Y., & Wang, C. S. (2005). A lily ASR protein involves abscisic acid signaling and confers drought and salt resistance in Arabidopsis. Plant Physiology, 139(2), 836–846.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ye, X., Gu, Y., & Wang, C. (2012). Fabrication of the Cu2O/polyvinyl pyrrolidone-graphene modified glassy carbon-rotating disk electrode and its application for sensitive detection of herbicide paraquat. Sensors and Actuators B: Chemical, 173, 530–539.

    Article  CAS  Google Scholar 

  • Zhu, J. K. (2001). Plant salt tolerance. Trends in Plant Science, 6(2), 66–71.

    Article  CAS  PubMed  Google Scholar 

  • Zhu, J. K. (2002). Salt and drought stress signal transduction in plants. Annual Review of Plant Biology, 53(1), 247–273.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhu, C., Gore, M., Buckler, E. S., & Yu, J. (2008). Status and prospects of association mapping in plants. The Plant Genome Journal, 1(1), 5.

    Article  CAS  Google Scholar 

  • Zhu, Y., Qian, W., & Hua, J. (2010). Temperature modulates plant defense responses through NB-LRR proteins. PLoS Pathogens, 6, e1000844.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgement

The authors are thankful to Science and Engineering Research Board – Department of Science and Technology, New Delhi, India for the financial assistance (File No. YSS/2015/000265 and EMR/2016/000579). Thanks, are also due to the Amity University Haryana authorities for their encouragement and facilities.

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  1. Department of Biotechnology, Mohanlal Sukhadia University, Udaipur, Rajasthan, India

    Avinash Marwal

  2. Department of Biosciences, School of Sciences, Mody University of Science and Technology, Sikar, Rajasthan, India

    Rajesh Kumar, Rakesh Kumar Verma & Megha Mishra

  3. Department of Biotechnology, Deen Dayal Upadhyaya Gorakhpur University, Gorakhpur, Uttar Pradesh, India

    R. K. Gaur

  4. Amity Institute of Biotechnology, Amity University, Gurgaon, Haryana, India

    S. M. Paul Khurana

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  1. Amity Institute of Biotechnology, Amity University, Gurgaon, Haryana, India

    S. M. Paul Khurana

  2. Department of Biotechnology, Deen Dayal Upadhyaya Gorakhpur University, Gorakhpur, Uttar Pradesh, India

    Rajarshi Kumar Gaur

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Marwal, A., Kumar, R., Verma, R.K., Mishra, M., Gaur, R.K., Khurana, S.M.P. (2019). Genomics and Molecular Mechanisms of Plant’s Response to Abiotic and Biotic Stresses. In: Khurana, S., Gaur, R. (eds) Plant Biotechnology: Progress in Genomic Era. Springer, Singapore. https://doi.org/10.1007/978-981-13-8499-8_6

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