Skip to main content

Genetic Diversity of Pathogenic Yeasts

  • Chapter
  • First Online:

Abstract

Human fungal diseases, including yeast infections, pose a significant concern to public health, affecting over one billion people worldwide and causing one million deaths per annum. Yeasts do not form a separate taxonomic group; instead, they are placed in two separate phyla: Ascomycota and Basidiomycota. Yeasts occur in a variety of environmental niches; many are part of the human normal microbiota but become pathogenic in immunocompromised individuals, thus acting as opportunistic pathogens. Since the number of people presenting immune system dysfunctions is increasing, yeast pathogens are becoming much more prevalent in systemic infections. Pathogenic yeasts include species of Cryptococcus, Candida, Paracoccidioides, Histoplasma, Sporothrix, Blastomyces and Pneumocystis. These yeasts cause a significant challenge for clinical microbiologists and physicians. Advances in medical research, made during the last few decades, have improved the diagnostic and therapeutic capabilities for a variety of infections. The availability of refined molecular data has increased the understanding of genetic and environmental diversity of pathogenic yeasts, as well as of the evolution of virulence attributes. This chapter reviews the genetic diversity and geographical distribution of the aforementioned pathogenic yeasts as assessed by specific loci targeting techniques.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  • Abbes S, Sellami H, Sellami A, Hadrich I, Amouri I, Mahfoudh N, Neji S, Makni F, Makni H, Ayadi A (2012) Candida glabrata strain relatedness by new microsatellite markers. Eur J Clin Microbiol Infect Dis 31(1):83–91

    Article  CAS  PubMed  Google Scholar 

  • Alby K, Schaefer D, Bennett RJ. (2009) Homothallic and heterothallic mating in the opportunistic pathogen Candida albicans. Nature 460:890–893

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Arcenas RC, Uhl JR, Buckwalter SP, Limper AH, Cirino D, Roberts GD, Wengenack NL (2006) A real-time polymerase chain reaction assay for detection of Pneumocystis from bronchoalveolar lavage fluid. Diagn Microbiol Infect Dis 54(3):169–175

    Article  CAS  PubMed  Google Scholar 

  • Arrillaga-Moncrieff I, Capilla J, Mayayo E, Marimon R, Mariné M, Gené J, Cano J, Guarro J (2009) Different virulence levels of the species of Sporothrix in a murine model. Clin Microbiol Infect 15(7):651–655

    Article  CAS  PubMed  Google Scholar 

  • Arunmozhi Balajee S, Hurst SF, Chang LS, Miles M, Beeler E, Hale C, Kasuga T, Benedict K, Chiller T, Lindsley MD (2013) Multilocus sequence typing of Histoplasma capsulatum in formalin-fixed paraffin-embedded tissues from cats living in non-endemic regions reveals a new phylogenetic clade. Med Mycol 51(4):345–351

    Article  CAS  PubMed  Google Scholar 

  • Beale MA, Sabiiti W, Robertson EJ, Fuentes-Cabrejo KM, O’Hanlon SJ, Jarvis JN, Loyse A, Meintjes G, Harrison TS, May RC, Fisher MC (2015) Genotypic diversity is associated with clinical outcome and phenotype in cryptococcal meningitis across southern Africa. PLoS Negl Trop Dis 9(6):e0003847

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Beard CB, Roux P, Nevez G, Hauser PM, Kovacs JA, Unnasch TR, Lundgren B (2004) Strain typing methods and molecular epidemiology of Pneumocystis pneumonia. Emerg Infect Dis 10(10):1729–1735

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bennett JE, Izumikawa K, Marr KA (2004) Mechanism of increased fluconazole resistance in Candida glabrata during prophylaxis. Antimicrob Agents Chemother 48(5):1773–1777

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Boekhout T, Theelen B, Diaz M, Fell JW, Hop WC, Abeln EC, Dromer F, Meyer W (2001) Hybrid genotypes in the pathogenic yeast Cryptococcus neoformans. Microbiology 147(4):891–907

    Article  CAS  PubMed  Google Scholar 

  • Brandão FA, Derengowski LS, Albuquerque P, Nicola AM, Silva-Pereira I, Poças – Fonseca MJ (2015) Histone deacetylases inhibitors effects on Cryptococcus neoformans major virulence phenotypes. Virulence 6(6):618–630

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brandão FA, Esher SK, Ost KS, Pianalto K, Nichols CB, Fernandes L, Bocca AL, Poças-Fonseca MJ, Alspaugh JA (2018) HDAC genes play distinct and redundant roles in Cryptococcus neoformans virulence. Sci Rep 8:5209. https://doi.org/10.1038/s41598-018-21965-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brisse S, Pannier C, Angoulvant A, De Meeus T, Diancourt L, Faure O, Muller H, Peman J, Viviani MA, Grillot R, Dujon B (2009) Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples. Eukaryot Cell 8(3):287–295

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brown GD, Denning DW, Gow NA, Levitz SM, Netea MG, White TC (2012) Hidden killers: human fungal infections. Sci Transl Med 4(165):165rv13

    Article  CAS  PubMed  Google Scholar 

  • Brown EM, McTaggart LR, Dunn D, Pszczolko E, Tsui KG, Morris SK, Stephens D, Kus JV, Richardson SE (2018) Epidemiology and geographic distribution of blastomycosis, histoplasmosis, and coccidioidomycosis, Ontario, Canada, 1990-2015. Emerg Infect Dis 24(7):1257–1266

    Article  PubMed  PubMed Central  Google Scholar 

  • Bustamante B, Campos PE (2001) Endemic sporotrichosis. Curr Opin Infect Dis 14:145–149

    Article  CAS  PubMed  Google Scholar 

  • Byrnes EJ III, Bartlett KH, Perfect JR, Heitman J (2011) Cryptococcus gattii: an emerging fungal pathogen infecting humans and animals. Microbes Infect 13(11):895–907

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Calcagno AM, Niño-Vega G, San-Blas F, San-Blas G (1998) Geographic discrimination of Paracoccidioides brasiliensis strains by randomly amplified polymorphic DNA analysis. J Clin Microbiol 36(6):1733–1736

    CAS  PubMed  PubMed Central  Google Scholar 

  • Camacho E, Niño-Vega GA (2017) Paracoccidioides spp.: virulence factors and immune-evasion strategies. Mediators Inflamm 2017:Article ID 5313691

    Google Scholar 

  • Capponi M, Sureau P, Segretain G (1956) Penicilliosis of Rhizomys sinensis. Bull Soc Pathol Exot 49(3):418–421

    CAS  Google Scholar 

  • Carman WF, Frean JA, Crewe-Brown HH, Culligan GA, Young CN (1989) Blastomycosis in Africa. Mycopathologia 107(1):25–32

    Article  CAS  PubMed  Google Scholar 

  • Carrero LL, Nino-Vega G, Teixeira MM, Carvalho MJA, Soares CM, Pereira M, Jesuino RS, McEwen JG, Mendoza L, Taylor JW, Felipe MS (2008) New Paracoccidioides brasiliensis isolate reveals unexpected genomic variability in this human pathogen. Fungal Genet Biol 45(5):605–612

    Article  CAS  PubMed  Google Scholar 

  • Carreté L, Ksiezopolska E, Pegueroles C, Gómez-Molero E, Saus E, Iraola-Guzmán S, Loska D, Bader O, Fairhead C, Gabaldón T (2018) Patterns of genomic variation in the opportunistic pathogen Candida glabrata suggest the existence of mating and a secondary association with humans. Curr Biol 28(1):15–27

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Carter DA, Burt A, Taylor JW, Koenig GL, White TJ (1996) Clinical isolates of Histoplasma capsulatum from Indianapolis, Indiana, have a recombining population structure. J Clin Microbiol 34(10):2577–2584

    CAS  PubMed  PubMed Central  Google Scholar 

  • Carter DA, Burt A, Taylor JW, Koenig GL, Dechairo BM, White TJ (1997) A set of electrophoretic molecular markers for strain typing and population genetic studies of Histoplasma capsulatum. Electrophoresis 18(7):1047–1053

    Article  CAS  PubMed  Google Scholar 

  • Carter DA, Taylor JW, Dechairo B, Burt A, Koenig GL, White TJ (2001) Amplified single-nucleotide polymorphisms and a (GA)n microsatellite marker reveal genetic differentiation between populations of Histoplasma capsulatum from the Americas. Fung Genet Biol 34(1):37–48

    Article  CAS  Google Scholar 

  • Chan JF, Lau SK, Yuen KY, Woo PC (2016) Talaromyces (Penicillium) marneffei infection in non-HIV-infected patients. Emerg Microbes Infect 5(3):e19

    PubMed  PubMed Central  Google Scholar 

  • Chastain DB, Henao-Martínez AF, Franco-Paredes C (2017) Opportunistic invasive mycoses in AIDS: cryptococcosis, histoplasmosis, coccidioidomycosis, and talaromycosis. Curr Infect Dis Rep 19(10):36

    Article  PubMed  Google Scholar 

  • Chen SC, Meyer W, Sorrell TC (2014) Cryptococcus gattii infections. Clin MicrobiolRev 27:980–1024

    Article  CAS  Google Scholar 

  • Cisalpino PS, Puccia R, Yamauchi LM, Cano MI, da Silveira JF, Travassos LR (1996) Cloning, characterization, and epitope expression of the major diagnostic antigen of Paracoccidioides brasiliensis. J Biol Chem 271(8):4553–4560

    Article  CAS  PubMed  Google Scholar 

  • Cogliati M. (2013) Global molecular epidemiology of Cryptococcus neoformans and Cryptococcus gattii: an atlas of the molecular types. Scientifica 2013: Article ID 675213

    Google Scholar 

  • Curran T, McCaughey C, Coyle PV (2013) Pneumocystis jirovecii multilocus genotyping profiles in Northern Ireland. J Med Microbiol 62(8):1170–1174

    Article  PubMed  Google Scholar 

  • d’Enfert C, Bougnoux ME, Feri A, Legrand M, Loll-Krippleber R, Marton T, Maufrais C, Ropars J, Sertour N, Sitterlé E (2017) Genome diversity and dynamics in Candida albicans. In: Candida albicans: cellular and molecular biology. Springer, Cham, pp 205–232

    Chapter  Google Scholar 

  • Damasceno LS, Novaes AR Jr, Alencar CHM, Lima DT, Sidrim JJC, Gonçalves MVF, de Mesquita JRL, Leitão TMJS (2013) Disseminated histoplasmosis and AIDS: relapse and late mortality in endemic area in North-Eastern Brazil. Mycoses 56(5):520–526

    Article  Google Scholar 

  • Damasceno LS, Leitão TMJS, Taylor ML, Muniz MM, Zancopé-Oliveira RM (2016) The use of genetic markers in the molecular epidemiology of histoplasmosis: a systematic review. Eur J Clin Microbiol Infect Dis 35(1):19–27

    Article  CAS  PubMed  Google Scholar 

  • Darling ST (1909) The morphology of the parasite (Histoplasma capsulatum) and the lesions of histoplasmosis, a fatal disease of tropical America. J Exp Med 11(4):515–531

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • de Medeiros Muniz M, Meyer W, Nosanchuk JD, Zancope-Oliveira RM (2010) Comparison of different DNA-based methods for molecular typing of Histoplasma capsulatum. Appl Environ Microbiol 76(13):4438–4447

    Article  CAS  Google Scholar 

  • De Meeûs T, Renaud F, Mouveroux E, Reynes J, Galeazzi G, Mallié M, Bastide JM (2002) Genetic structure of Candida glabrata populations in AIDS and non-AIDS patients. J Clin Microbiol 40(6):2199–2206

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • De Monte A, Risso K, Normand AC, Boyer G, L’Ollivier C, Marty P, Gari-Toussaint M (2014) Chronic pulmonary penicilliosis due to Penicillium marneffei: late presentation in a French traveler. J Travel Med 21(4):292–294

    Article  PubMed  Google Scholar 

  • Deepe GS, Buesing WR (2011) Deciphering the pathways of death of Histoplasma capsulatum-infected macrophages: implications for the immunopathogenesis of early infection. J Immunol 188(1):334–344

    Article  CAS  PubMed  Google Scholar 

  • Delfino D, Scordino F, Pernice I, Passo CL, Galbo R, David A, Barberi I, Criseo G, Cascio A, Romeo O (2014) Potential association of specific Candida parapsilosis genotypes, bloodstream infections and colonization of health workers’ hands. Clin Microbiol Infec 20(11):O946–O951

    Article  CAS  Google Scholar 

  • Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, da Silva Ferreira ME, Garcia AM, Grynberg M, Gujja S (2011) Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis. PLoS Genet 7(10):e1002345

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ding H, Mayer FL, Sánchez-León E, Araújo GRDS, Frases S, Kronstad JW (2016) Networks of fibers and factors: regulation of capsule formation in Cryptococcus neoformans. F1000 Res 2016 5(F1000 Faculty Rev):1786

    Google Scholar 

  • DiSalvo AF (1992) The epidemiology of blastomycosis. In: Blastomycosis. Springer, Boston, pp 75–104

    Chapter  Google Scholar 

  • DiSalvo AF, Fickling AM, Ajello L (1973) Infection caused by Penicillium marneffei: description of first natural infection in man. Am J Clin Pathol 60(2):259–263

    Article  CAS  PubMed  Google Scholar 

  • Dodgson AR, Pujol C, Denning DW, Soll DR, Fox AJ (2003) Multilocus sequence typing of Candida glabrata reveals geographically enriched clades. J Clin Microbiol 41(12):5709–5717

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dwight PJ, Naus M, Sarsfield P, Limerick B (2000) An outbreak of human blastomycosis: the epidemiology of blastomycosis in the Kenora catchment region of Ontario. Canada Can Commun Dis Rep 26(10):82–91

    CAS  PubMed  Google Scholar 

  • Eggimann P, Garbino J, Pittet D (2003) Epidemiology of Candida species infections in critically ill non-immunosuppressed patients. Lancet Infect Dis 3:685–702

    Article  PubMed  Google Scholar 

  • Espinel-Ingroff A, Abreu DPB, Almeida-Paes R, Brilhante RSN, Chakrabarti A, Chowdhary A, Hagen F, Córdoba S, Gonzalez GM, Govender NP, Guarro J, Johnson EM, Kidd SE, Pereira SA, Rodrigues AM, Rozental S, Szeszs MW, Ballesté Alaniz R, Bonifaz A, Bonfietti LX, Borba-Santos LP, Capilla J, Colombo AL, Dolande M, Isla MG, Melhem MSC, Mesa-Arango AC, Oliveira MME, Panizo MM, Pires de Camargo Z, Zancope-Oliveira RM, Meis JF, Turnidge J (2017) Multicenter and international study of MIC/MEC distributions for definition of epidemiological cutoff values (ECVs) for species of Sporothrix identified by molecular methods. Antimicrob Agents Chemother 61:e01057–e01017

    CAS  PubMed  PubMed Central  Google Scholar 

  • Farrer RA, Voelz K, Henk DA, Johnston SA, Fisher MC, May RC, Cuomo CA (2016) Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii. Phil Trans R Soc B371(1709): 20160021

    Google Scholar 

  • Feitosa LDS, Cisalpino PS, dos Santos MRM, Mortara RA, Barros TF, Morais FV, Puccia R, da Silveira JF, de Camargo ZP (2003) Chromosomal polymorphism, syntenic relationships, and ploidy in the pathogenic fungus Paracoccidioides brasiliensis. Fung Genet Biol. 39(1):60–69

    Article  CAS  Google Scholar 

  • Fidel PL, Vazquez JA, Sobel JD (1999) Candida glabrata: review of epidemiology, pathogenesis, and clinical disease with comparison to C. albicans. Clin Microbiol Rev 12(1):80–96

    Article  PubMed  PubMed Central  Google Scholar 

  • Fraser VJ, Keath EJ, Powderly WG (1991) Two cases of blastomycosis from a common source: use of DNA restriction analysis to identify strains. J Infect Dis 163(6):1378–1381

    Article  CAS  PubMed  Google Scholar 

  • Ge L, Zhou C, Song Z, Zhang Y, Wang L, Zhong B, Hao F (2010) Primary localized histoplasmosis with lesions restricted to the mouth in a Chinese HIV-negative patient. Int J Infect Dis 14:e325–e328

    Article  PubMed  Google Scholar 

  • Gilchrist TC, Stokes WR (1898) A case of pseudo-lupus vulgaris caused by a Blastomyces. J Exp Med 3(1):53–78

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Harris J, Lockhart S, Chiller T (2012) Cryptococcus gattii: where do we go from here? Med Mycol 50(2):113–129

    Article  PubMed  Google Scholar 

  • Hays C, Duhamel C, Cattoir V, Bonhomme J (2011) Rapid and accurate identification of species belonging to the Candida parapsilosis complex by real-time PCR and melting curve analysis. J Med Microbiol 60(4):477–480

    Article  CAS  PubMed  Google Scholar 

  • Hilmioğlu-Polat S, Sharifynia S, Öz Y, Aslan M, Gündoğdu N, Serin A, Rafati H, Mohammadi F, Yeşim-Metin D, Döğen A, Ilkit M (2018) Genetic diversity and antifungal susceptibility of Candida parapsilosis Sensu Stricto isolated from bloodstream infections in Turkish patients. Mycopathologia 183(4):701–708

    Article  CAS  PubMed  Google Scholar 

  • Hsueh PR, Teng LJ, Hung CC, Hsu JH, Yang PC, Ho SW, Luh KT (2000) Molecular evidence for strain dissemination of Penicillium marneffei: an emerging pathogen in Taiwan. J Infect Dis 181(5):1706–1712

    Article  CAS  PubMed  Google Scholar 

  • Jager ES, Wehner FC, Korsten L (2001) Microbial ecology of the mango phylloplane. Microb Ecol 42(2):201–207

    PubMed  Google Scholar 

  • Kanbe T, Natsume L, Goto I, Kawasaki M, Mochizuki T, Ishizaki H, Kikuchi A (2005) Rapid and specific identification of Sporothrix schenckii by PCR targeting the DNA topoisomerase II gene. J Dermatol Sci 38(2):99–106

    Article  CAS  PubMed  Google Scholar 

  • Kasuga T, White TJ, Koenig G, Mcewen J, Restrepo A, Castaneda E, Da Silva Lacaz C, Heins-Vaccari EM, De Freitas RS, Zancopé-Oliveira RM, Qin Z (2003) Phylogeography of the fungal pathogen Histoplasma capsulatum. Mol Ecol 12(12):3383–3401

    Article  CAS  PubMed  Google Scholar 

  • Katiyar S, Shiffrin E, Shelton C, Healey K, Vermitsky JP, Edlind T (2016) Evaluation of polymorphic locus sequence typing for Candida glabrata epidemiology. J Clin Microbiol 54(4):1042–1050

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kato M, Ozeki M, Kikuchi A, Kanbe T (2001) Phylogenetic relationship and mode of evolution of yeast DNA topoisomerase II gene in the pathogenic Candida species. Gene 272(1):275–281

    Article  CAS  PubMed  Google Scholar 

  • Kauffman CA (2008) Diagnosis of histoplasmosis in immunosuppressed patients. urr Opin Infect Dis 21(4):421–425

    Article  Google Scholar 

  • Kovacs JA, Gill VJ, Meshnick S, Masur H (2001) New insights into transmission, diagnosis, and drug treatment of Pneumocystis carinii pneumonia. JAMA 286(19):2450–2460

    Article  CAS  PubMed  Google Scholar 

  • Kumar DA, Muralidhar S, Biswas K, Banerjee U, Basir SF, Khan LA (2014) Species diversity, antifungal susceptibility, and virulence attributes of Candida colonizing the oral cavities of adult diabetic patients. J Mycol 2014:Article ID 395041

    Google Scholar 

  • Kutty SN, Philip R (2008) Marine yeasts—a review. Yeast 25(7):465–483

    Article  CAS  PubMed  Google Scholar 

  • Lasker BA (2006) Nucleotide sequence-based analysis for determining the molecular epidemiology of Penicillium marneffei. J Clin Microbiol 44(9):3145–3153

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lau SK, Tsang CC, Woo PC (2017) Talaromyces marneffei genomic, transcriptomic, proteomic and metabolomic studies reveal mechanisms for environmental adaptations and virulence. Toxins 9(6):E192

    Article  CAS  PubMed  Google Scholar 

  • Lehmann PF, Lin D, Lasker BA (1992) Genotypic identification and characterization of species and strains within the genus Candida by using random amplified polymorphic DNA. J Clin Microbiol 30(12):3249–3254

    CAS  PubMed  PubMed Central  Google Scholar 

  • Leigh TR, Kangro HO, Gazzard BG, Jeffries DJ, Collins JV (1993) DNA amplification by the polymerase chain reaction to detect sub-clinical Pneumocystis carinii colonization in HIV-positive and HIV-negative male homosexuals with and without respiratory symptoms. Respir Med 87(7):525–529

    Article  CAS  PubMed  Google Scholar 

  • Li H, Veenendaal E, Ab Shukor NA, Cobbinah JR, Leifert C (1995) Yeast populations on the tropical timber tree species Milicia excelsa. Lett Appl Microbiol 21(5):322–326

    Article  Google Scholar 

  • Lin D, Wu LC, Rinaldi MG, Lehmann PF (1995) Three distinct genotypes within Candida parapsilosis from clinical sources. J Clin Microbiol 33(7):1815–1821

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lin CY, Chen YC, Lo HJ, Chen KW, Li SY (2007) Assessment of Candida glabrata strain relatedness by pulsed-field gel electrophoresis and multilocus sequence typing. J Clin Microbiol 45(8):2452–2459

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Litvintseva AP, Thakur R, Vilgalys R, Mitchell TG (2005) Multilocus sequence typing reveals three genetic subpopulations of Cryptococcus neoformans var. grubii (serotype A), including a unique population in Botswana. Genetics 172:2223–2238

    Article  CAS  PubMed  Google Scholar 

  • Litvintseva AP, Carbone I, Rossouw J, Thakur R, Govender NP, Mitchell TG (2011) Evidence that the human pathogenic fungus Cryptococcus neoformans var. grubii may have evolved in Africa. PLoS One 6(5):e19688

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Liu X, Lian C, Jin L, An L, Yang G, Lin X (2003) Characterization of Sporothrix schenckii by random amplification of polymorphic DNA assay. Chin Med J 116(2):239–242

    Article  CAS  PubMed  Google Scholar 

  • Lockhart SR, Joly S, Pujol C, Sobel JD, Pfaller MA, Sol DR (1997) Development and verification of fingerprinting probes for Candida glabrata. Microbiology 143(12):3733–3746

    Article  CAS  PubMed  Google Scholar 

  • Lott TJ, Frade JP, Lockhart SR (2010) Multilocus sequence type analysis reveals both clonality and recombination in populations of Candida glabrata bloodstream isolates from US surveillance studies. Eukaryot Cell 9(4):619–625

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mancianti F, Nardoni S, Ceccherelli R (2002) Occurrence of yeasts in psittacines droppings from captive birds in Italy. Mycopathologia 153(3):121–124

    Article  PubMed  Google Scholar 

  • Marimon R, Gené J, Cano J, Trilles L, Lazéra MDS, Guarro J (2006) Molecular phylogeny of Sporothrix schenckii. J Clin Microbiol 44(9):3251–3256

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Marimon R, Cano J, Gené J, Sutton DA, Kawasaki M, Guarro J (2007) Sporothrix brasiliensis, S. globosa, and S. mexicana, three new Sporothrix species of clinical interest. J Clin Microbiol 45:3198–3206

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Matute DR, Sepulveda VE, Quesada LM, Goldman GH, Taylor JW, Restrepo A, McEwen JG (2006) Microsatellite analysis of three phylogenetic species of Paracoccidioides brasiliensis. J Clin Microbiol 44(6):2153–2157

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Matute DR, Torres IP, Salgado-Salazar C, Restrepo A, McEwen JG (2007) Background selection at the chitin synthase II (chs2) locus in Paracoccidioides brasiliensis species complex. Fung Genet Biol. 44(5):357–367

    Article  CAS  Google Scholar 

  • McCullough MJ, DiSalvo AF, Clemons KV, Park P, Stevens DA (2000) Molecular epidemiology of Blastomyces dermatitidis. Clin Infect Dis 30(2):328–335

    Article  CAS  PubMed  Google Scholar 

  • McEwen JG, Taylor JW, Carter D, Xu J, Felipe MSS, Vilgalys R, Mitchell TG, Kasuga T, White TJ, Koenig G, Mcewen J, Restrepo A, Castaneda E, da Silva Lacaz C, Heins-Vaccari EM, De Freitas RS, Zancopé-Oliveira RM, Qin Z (2003) Phylogeography of the fungal pathogen Histoplasma capsulatum. Mol Ecol 12(12):3383–3401

    Article  CAS  PubMed  Google Scholar 

  • McTaggart LR, Brown EM, Richardson SE (2016) Phylogeographic analysis of Blastomyces dermatitidis and Blastomyces gilchristii reveals an association with North American freshwater drainage basins. PloS One 11(7):e0159396

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Medrano FJ, Montes-Cano M, Conde M, De La Horra C, Respaldiza N, Gasch A, Perez-Lozano MJ, Varela JM, Calderon EJ (2005) Pneumocystis jirovecii in general population. Emerg Infect Dis 11(2):245–250

    Article  PubMed  PubMed Central  Google Scholar 

  • Meece JK, Anderson JL, Klein BS, Sullivan TD, Foley SL, Baumgardner DJ, Brummitt CF, Reed KD (2010) Genetic diversity in Blastomyces dermatitidis: implications for PCR detection in clinical and environmental samples. Med Mycol 48(2):285–290

    Article  CAS  PubMed  Google Scholar 

  • Meyer W, Gilgado F, Ngamskulrungroj P, Trilles L, Hagen F, Castañeda E, Boekhout T (2011) Molecular typing of the Cryptococcus neoformans/Cryptococcus gattii species complex. In: Cryptococcus. American Society of Microbiology, Washington, DC, pp 327–357

    Chapter  Google Scholar 

  • Millward IR, Williams MC (2005) Cryptococcus neoformans granuloma in the lung and spinal cord of a free-ranging cheetah (Acinonyx jubatus). A clinical report and literature review: clinical communication. J S Afr Vet Assoc 76(4):228–232

    Article  CAS  PubMed  Google Scholar 

  • Mora-Cabrera M, Alonso RA, Ulloa-Arvizu R, Torres-Guerrero H (2001) Analysis of restriction profiles of mitochondrial DNA from Sporothrix schenckii. Med Mycol 39(5):439–444

    Article  CAS  PubMed  Google Scholar 

  • Moura Campos MCR, Gesztesi JL, Vincentini AP, Lopes JD, Camargo ZP (1995) Expression and isoforms of gp43 in different strains of Paracoccidioides brasiliensis. J Med Vet Mycol 33(4):223–227

    Article  Google Scholar 

  • Mseddi F, Sellami A, Jarboui MA, Sellami H, Makni F, Ayadi A (2011) First environmental isolations of Cryptococcus neoformans and Cryptococcus gattii in Tunisia and review of published studies on environmental isolations in Africa. Mycopathologia 171(5):355–360

    Article  CAS  PubMed  Google Scholar 

  • Muñoz JF, Farrer RA, Desjardins CA, Gallo JE, Sykes S, Sakthikumar S, Misas E, Whiston EA, Bagagli E, Soares CM, Teixeira MDM (2016) Genome diversity, recombination, and virulence across the major lineages of Paracoccidioides. MSphere 1(5):e00213–e00216

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nemecek JC, Wuthrich M, Klein BS (2006) Global control of dimorphism and virulence in fungi. Science 312:583–588

    Article  CAS  PubMed  Google Scholar 

  • Nevez G, Jounieaux V, Linas MD, Guyot K, Leophonte P, Massip P, Schmtt JL, Seguela JP, Camus D, Dei-Cas E, Raccurt C (1997) High frequency of Pneumocystis carinii sp. f. hominis colonization in HIV-negative patients. J Eukaryot Microbiol 44:36s

    Article  CAS  PubMed  Google Scholar 

  • Nevez G, Magois E, Duwat H, Gouilleux V, Jounieaux V, Totet A (2006) Apparent absence of Pneumocystis jirovecii in healthy subjects. Clin Infect Dis 42:e99–e101

    Article  PubMed  Google Scholar 

  • Neyra E, Fonteyne PA, Swinne D, Fauche F, Bustamante B, Nolard N (2005) Epidemiology of human sporotrichosis investigated by amplified fragment length polymorphism. J Clin Microbiol 43(3):1348–1352

    Article  PubMed  PubMed Central  Google Scholar 

  • Nino-Vega GA, Munro CA, San-Blas G, Gooday GW, Gow NAR (2000) Differential expression of chitin synthase genes during temperature-induced dimorphic transitions in Paracoccidioides brasiliensis. Med Mycol 38(1):31–39

    Article  CAS  PubMed  Google Scholar 

  • Nosek J, Tomáška LU, Ryčovská A, Fukuhara H (2002) Mitochondrial telomeres as molecular markers for identification of the opportunistic yeast pathogen Candidaparapsilosis. J Clin Microbiol 40(4):1283–1289

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nucci M, Colombo AL (2007) Candidemia due to Candida tropicalis: clinical, epidemiologic, and microbiologic characteristics of 188 episodes occurring in tertiary care hospitals. Diagn Microbiol Infect Dis 58(1):77–82

    Article  CAS  PubMed  Google Scholar 

  • Nucci M, Queiroz-Telles M, Tobón AM, Restrepo A, Colombo AL (2010) Epidemiology of opportunistic fungal infections in Latin America. Clin Infect Dis 51(5):561–570

    Article  PubMed  Google Scholar 

  • Odds FC (2009) In Candida albicans, resistance to flucytosine and terbinafine is linked to MAT locus homozygosity and multilocus sequence typing clade 1. FEMS Yeast Res 9(7):1091–1101

    Article  CAS  PubMed  Google Scholar 

  • Paluchowska P, Tokarczyk M, Bogusz B, Skiba I, Budak A (2014) Molecular epidemiology of Candida albicans and Candida glabrata strains isolated from intensive care unit patients in Poland. Mem Inst Oswaldo Cruz 109(4):436–441

    Article  PubMed  PubMed Central  Google Scholar 

  • Pan B, Chen M, Pan W, Liao W (2013) Histoplasmosis: a new endemic fungal infection in China? Review and analysis of cases. Mycoses 56(3):212–221

    Article  PubMed  Google Scholar 

  • Park BJ, Wannemuehler KA, Marston BJ, Govender N, Pappas PG, Chiller TM (2009) Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS. AIDS 23(4):525–530

    Article  PubMed  Google Scholar 

  • Pfaller MA, Castanheira M, Messer SA, Moet GJ, Jones RN (2010) Variation in Candida spp. distribution and antifungal resistance rates among bloodstream infection isolates by patient age: report from the SENTRY Antimicrobial Surveillance Program (2008–2009). Diagn Microbiol Infect Dis 68(3):278–283

    Article  PubMed  Google Scholar 

  • Pujol C, Pfaller M, Soll DR (2002) Ca3 fingerprinting of Candida albicans bloodstream isolates from the United States, Canada, South America, and Europe reveals a European clade. J Clin Microbiol 40(8):2729–2740

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rajasingham R, Smith RM, Park BJ, Jarvis JN, Govender NP, Chiller TM, Denning DW, Loyse A, Boulware DR (2017) Global burden of disease of HIV-associated cryptococcal meningitis: an updated analysis. Lancet Infect Dis 17(8):873–881

    Article  PubMed  PubMed Central  Google Scholar 

  • Randhawa HS, Chowdhary A, Kathuria S, Roy P, Misra DS, Jain S, Chugh TD (2013) Blastomycosis in India: report of an imported case and current status. Med Mycol 51(2):185–192

    Article  CAS  PubMed  Google Scholar 

  • Rangel-Gamboa L, Martinez-Hernandez F, Maravilla P, Flisser A (2018) A population genetics analysis in clinical isolates of Sporothrix schenckii based on calmodulin and calcium/calmodulin-dependent kinase partial gene sequences. Mycoses 61(6):383–392

    Article  CAS  PubMed  Google Scholar 

  • Respaldiza N, Medrano FJ, Medrano AC, Varela JM, De La Horra C, Montes-Cano M, Ferrer S, Wichmann I, Gargallo-Viola D, Calderon EJ (2004) High seroprevalence of Pneumocystis infection in Spanish children. Clin Microbiol Infect 10(11):1029–1031

    Article  CAS  PubMed  Google Scholar 

  • Restrepo A, Tobón AM, Cano LE (2015) Paracoccidioides brasiliensis: in principles and practice of infectious diseases. Elsevier, Philadelphia, pp 2995–3002

    Google Scholar 

  • Richardson MD, Warnock DW (2012) Fungal infection: diagnosis and management. John Wiley & Sons

    Google Scholar 

  • Rodrigues AM, De Hoog S, De Camargo ZP (2013) Emergence of pathogenicity in the Sporothrix schenckii complex. Med Mycol 51(4):405–412

    Article  PubMed  Google Scholar 

  • Rodríguez-Arellanes G, de Sousa CN, de Medeiros-Muniz M, Ramírez JA, Pizzini CV, de Abreu-Almeida M, de Oliveira MME, Fusco-Almeida AM, Vite-Garín T, Pitangui NS, Estrada-Bárcenas DA (2013) Frequency and genetic diversity of the MAT1 locus of Histoplasma capsulatum isolated in Mexico and Brazil. Eukaryot Cell 12(7):1033–1038

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rosa CA, Resende MA, Barbosa FA, Morais PB, Franzot SP (1995) Yeast diversity in a mesotrophic lake on the karstic plateau of Lagoa Santa, MG-Brazil. Hydrobiologia 308(2):103–108

    Article  Google Scholar 

  • Roy B, Meyer SA (1998) Confirmation of the distinct genotype groups within the form species Candida parapsilosis. J Clin Microbiol 36(1):216–218

    CAS  PubMed  PubMed Central  Google Scholar 

  • Sabino R, Sampaio P, Rosado L, Videira Z, Grenouillet F, Pais C (2015) Analysis of clinical and environmental Candida parapsilosis isolates by microsatellite genotyping – a tool for hospital infection surveillance. Clin Microbiol Infect 21(10):954.e1–954.e8

    Article  CAS  Google Scholar 

  • Saccente M, Woods GL (2010) Clinical and laboratory update on blastomycosis. Clin Microbiol Rev 23(2):367–381

    Article  PubMed  PubMed Central  Google Scholar 

  • Salgado-Salazar C, Jones LR, Restrepo A, McEwen JG (2010) The human fungal pathogen Paracoccidioides brasiliensis (Onygenales: Ajellomycetaceae) is a complex of two species: phylogenetic evidence from five mitochondrial markers. Cladistics 26(6):613–624

    Article  PubMed  Google Scholar 

  • Sandhu GS, Kline BC, Stockman L, Roberts GD (1995) Molecular probes for diagnosis of fungal infections. J Clin Microbiol 33(11):2913–2919

    CAS  PubMed  PubMed Central  Google Scholar 

  • Sanfelice F (1894) Contributo alla morfologia e biologia dei blastomiceti che si sviluppano nei succhi di alcuni frutti. Ann Igien, vol 4, pp 463–495

    Google Scholar 

  • Schenck BR (1898) On refractory subcutaneous abscesses caused by a fungus possibly related to the Sporotricha. Bull John Hopkins Hosp 9:286–290

    Google Scholar 

  • Scordino F, Giuffrè L, Barberi G, Marino Merlo F, Orlando MG, Giosa D, Romeo O (2018) Multilocus sequence typing reveals a new cluster of closely related Candida tropicalis genotypes in Italian patients with neurological disorders. Front Microbiol 9:679

    Article  PubMed  PubMed Central  Google Scholar 

  • Shin JH, Bougnoux ME, d’Enfert C, Kim SH, Moon CJ, Joo MY, Lee K, Kim MN, Lee HS, Shin MG, Suh SP (2011) Genetic diversity among Korean Candida albicans bloodstream isolates: assessment by multilocus sequence typing and restriction endonuclease analysis of genomic DNA using BssHII. J Clin Microbiol 49(7):2572–2577

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Singer LM, Meyer W, Firacative C, Thompson GR, Samitz E, Sykes JE (2014) Antifungal drug susceptibility and phylogenetic diversity among Cryptococcus isolates from dogs and cats in North America. J Clin Microbiol 52(6):2061–2070

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Singh-Babak SD, Babak T, Diezmann S, Hill JA, Xie JL, Chen YL, Poutanen SM, Rennie RP, Heitman J, Cowen LE (2012) Global analysis of the evolution and mechanism of echinocandin resistance in Candida glabrata. PLoS Pathol 8(5):e1002718

    Article  CAS  Google Scholar 

  • Stathakis A, Lim KP, Boan P, Lavender M, Wrobel J, Musk M, Heath CH (2015) Penicillium marneffei infection in a lung transplant recipient. Transpl Infect Dis 17(3):429–434

    Article  CAS  PubMed  Google Scholar 

  • Stringer JR, Beard CB, Miller RF, Wakefield AE (2002) A new name (Pneumocystis jiroveci) for Pneumocystis from humans. Emerg Infect Dis 8(9):891–896

    Article  PubMed  PubMed Central  Google Scholar 

  • Supparatpinyo K, Khamwan C, Baosoung V, Sirisanthana T, Nelson KE (1994) Disseminated Penicillium marneffei infection in Southeast Asia. Lancet 344(8915):110–113

    Article  CAS  PubMed  Google Scholar 

  • Tavanti A, Davidson AD, Gow NA, Maiden MC, Odds FC (2005) Candida orthopsilosis and Candida metapsilosis spp. nov. to replace Candida parapsilosis groups II and III. J Clin Microbiol 43(1):284–292

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Taylor ML, Hernández-García L, Estrada-Bárcenas DA, Salas-Lizana R, Zancopé-Oliveira RM, García de la Cruz S, Galvão-Dias MA, Curiel-Quesada E, Canteros CE, Bojorquez-Torres G, Bogard-Fuentes CA, Zamora-Tehozol E (2012) Genetic diversity of microsatellite (GA)n and their flanking regions of Histoplasma capsulatum isolated from bats captured in three Latin-American countries. Fungal Biol 116:308–317

    Article  CAS  PubMed  Google Scholar 

  • Teixeira MDM, Theodoro RC, Oliveira FFMD, Machado GC, Hahn RC, Bagagli E, San-Blas G, Soares Felipe MS (2013) Paracoccidioides lutzii sp. nov.: biological and clinical implications. Med Mycol 52(1):19–28

    Google Scholar 

  • Teixeira MDM, Patané JS, Taylor ML, Gómez B, Theodoro RC, de Hoog S, Engelthaler DM, Zancopé-Oliveira RM, Felipe MS, Barker BM (2016) Worldwide phylogenetic distributions and population dynamics of the genus Histoplasma. PLoS Negl Trop Dis 10(6):e0004732

    Article  PubMed Central  Google Scholar 

  • Tortorano AM, Kibbler C, Peman J, Bernhardt H, Klingspor L, Grillot R (2006) Candidaemia in Europe: epidemiology and resistance. Int J Antimicrob Agents 27(5):359–366

    Article  CAS  PubMed  Google Scholar 

  • Trofa D, Gácser A, Nosanchuk JD (2008) Candida parapsilosis, an emerging fungal pathogen. Clin Microbiol Rev 21(4):606–625

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tsang CC, Tang JY, Lau SK, Woo PC (2018) Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era–past, present and future. Comput Struct Biotechnol J 16:197–210

    Article  PubMed  PubMed Central  Google Scholar 

  • Turissini DA, Gomez OM, Teixeira MM, McEwen JG, Matute DR (2017) Species boundaries in the human pathogen Paracoccidioides. Fung Genet Biol 106:9–25

    Article  Google Scholar 

  • Valinsky L, Della Vedova G, Jiang T, Borneman J (2002) Oligonucleotide fingerprinting of rRNA genes for analysis of fungal community composition. J Appl Environ Microbiol 68(12):5999–6004

    Article  CAS  Google Scholar 

  • Vanittanakom N, Cooper CR, Chariyalertsak S, Youngchim S, Nelson KE, Sirisanthana T (1996) Restriction endonuclease analysis of Penicillium marneffei. J Clin Microbiol 4(7):1834–1836

    Google Scholar 

  • Vargas SL, Ponce CA, Sanchez CA, Ulloa AV, Bustamante R, Juarez G (2003) Pregnancy and asymptomatic carriage of Pneumocystis jiroveci. Emerg Infect Dis 9:605–606

    Article  PubMed  PubMed Central  Google Scholar 

  • Wakefield AE, Pixley FJ, Banerji S, Sinclair K, Moxon ER, Miller RF, Hopkin JM (1990) Detection of Pneumocystis carinii with DNA amplification. Lancet 336(8713):451–453

    Article  CAS  PubMed  Google Scholar 

  • Walsh TJ, Larone DH, Schell WA, Mitchell TG (2003) Histoplasma, Blastomyces, Coccidioides, and other dimorphic fungi causing systemic mycoses. In: Manual of clinical microbiology. AMS Press, Washington, DC, pp 1781–1797

    Google Scholar 

  • Wang L, Lin X (2012) Morphogenesis in fungal pathogenicity: shape, size, and surface. PLoS Pathol 8:e1003027

    Article  CAS  Google Scholar 

  • Watanabe S, Kawasaki M, Mochizuki T, Ishizaki H (2004) RFLP analysis of the internal transcribed spacer regions of Sporothrix schenckii. Nippon Ishinkin Gakkai Zasshi 45(3):165–175

    Article  CAS  Google Scholar 

  • Wong SSY, Cao L, Yuen KY (1998) Management of Penicilliosis marneffei. J Am Med Assoc (Southeast Asian Edition)

    Google Scholar 

  • Woo PC, Tam EW, Chong KT, Cai JJ, Tung ET, Ngan AH, Lau SK, Yuen KY (2010) High diversity of polyketide synthase genes and the melanin biosynthesis gene cluster in Penicillium marneffei. FEBS J 277(18):3750–3758

    Article  CAS  PubMed  Google Scholar 

  • Yates-Siilata KE, Sander DM, Keath EJ (1995) Genetic diversity in clinical isolates of the dimorphic fungus Blastomyces dermatitidis detected by a PCR-based random amplified polymorphic DNA assay. J Clin Microbiol 33(8):2171–2175

    CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Marcio José Poças-Fonseca .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Singapore Pte Ltd.

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Ranjan, K., Poças-Fonseca, M.J. (2019). Genetic Diversity of Pathogenic Yeasts. In: Satyanarayana, T., Das, S., Johri, B. (eds) Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications. Springer, Singapore. https://doi.org/10.1007/978-981-13-8487-5_22

Download citation

Publish with us

Policies and ethics