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GCM-Bench: A Benchmark for RDF Data Management System on Microorganism Data

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Abstract

The biological data is growing up to an unprecedented scale, such as microorganism knowledge graph organized by biologists, which is represented by Resource Description Framework (RDF) data model. In this paper, GCM-Bench, a new benchmark to evaluate the performance of general-purpose RDF data management systems on microorganism RDF data is proposed, which consists of microorganism RDF data generator, SPARQL query workloads and automatic test system, that can execute the testing workloads automatically and monitor the resource utilization. Five RDF data management systems are selected for evaluation on different sizes of data using automatic test system. We think GCM-Bench will help microbiologists and system developers to select their proper RDF data management system.

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Acknowledgment

This work is supported by the National Key Research and Development Plan of China (Grant No. 2016YFB1000600 and 2016YFB1000601).

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Authors and Affiliations

  1. University of Chinese Academy of Sciences, Beijing, China

    Renfeng Liu & Jungang Xu

Authors
  1. Renfeng Liu
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  2. Jungang Xu
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Correspondence to Renfeng Liu .

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Editors and Affiliations

  1. Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China

    Rui Ren

  2. Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China

    Chen Zheng

  3. Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China

    Jianfeng Zhan

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Liu, R., Xu, J. (2019). GCM-Bench: A Benchmark for RDF Data Management System on Microorganism Data. In: Ren, R., Zheng, C., Zhan, J. (eds) Big Scientific Data Benchmarks, Architecture, and Systems. SDBA 2018. Communications in Computer and Information Science, vol 911. Springer, Singapore. https://doi.org/10.1007/978-981-13-5910-1_1

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  • DOI: https://doi.org/10.1007/978-981-13-5910-1_1

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  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-13-5909-5

  • Online ISBN: 978-981-13-5910-1

  • eBook Packages: Computer ScienceComputer Science (R0)

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