Skip to main content

Retroviral Vectors in Gene Therapy

  • Chapter
  • First Online:
Gene and Cell Therapy: Biology and Applications

Abstract

Viral vectors are the most effective means to deliver genes into cells. Evolution of viruses over the years has enabled them to adopt several strategies not only to enter but also infect a wide range of cells. Making use of this property, scientists have manipulated viruses to express therapeutic genes. These viruses serve as vehicles for gene delivery and are referred to as viral vectors. The ones that are currently used in gene therapy include retroviral vectors, lentiviral vectors, adenoviral vectors, adeno-associated viral vectors, and foamy viral vectors. Each of them has their own salient features that are both beneficial and harmful. Retroviral vectors belonging to the family Retroviridae were among the first viral vectors used in gene therapy clinical trials. Their genetic material is in the form of RNA. The ability of retroviruses to integrate into the host genome makes them a permanent resident of the cell. The Retroviridae family is further divided into two subfamilies and seven genera, out of which gammaretrovirus, lentivirus, and foamy virus are the most widely used. Gammaretroviral vectors which have been a part of nearly 21% of gene therapy clinical trials were developed from the prototype Moloney murine leukemia virus and hence referred to as MoMLV-based retroviral vectors. The gammaretroviral vector genome ranges in size from 9 to 11 kb and is composed of two long terminal repeats (LTRs) one each at the 3′ and 5′ ends and three essential genes gag, pol, and env which code for proteins required for viral packaging. Reports of insertional mutagenesis and clonal proliferation due to integration of gammaretrovirus into the LMO2 proto-oncogene raised concerns about safety of its application for human gene therapy. Another drawback of this virus is that it can transduce only rapidly proliferating cells. So, in order to successfully target terminally differentiated or largely quiescent cells such as stem cells, lentiviruses are used as they could infect both dividing and nondividing cells fairly efficiently. Unlike gammaretroviruses, lentiviruses do not require cells to be in active mitosis while entering. Over the past three decades, three different generations of lentiviral vectors have been developed, each generation significantly improved over the preceding one. Safety has always been a concern with the use of all viral vectors due to the adverse events reported such as immune response in the case of adenoviral vectors and insertional mutagenesis in the case of retroviral vectors. Recently, third-generation self-inactivating (SIN) lentiviral vectors have been proven to be very efficient and also safer when compared to gammaretroviral vectors which were used in earlier clinical trials. Despite integrating into active transcription units, lentiviral vectors were reported to have a safer integration profile compared to gammaretroviral vectors. Foamy viruses belong to the genera of spumavirus. Analysis of integration sites of foamy viruses in HSCs has shown a unique and safe integration profile compared to both gamma and lentiviruses. Reports from ongoing clinical trials might answer emerging questions related to their safety and efficacy in human gene therapy applications.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Warnock JN, Daigre C, Al-Rubeai M (2011) Introduction to viral vectors. Methods Mol Biol 737:1–25

    Article  CAS  Google Scholar 

  2. Kay MA, Glorioso JC, Naldini L (2001) Viral vectors for gene therapy: the art of turning infectious agents into vehicles of therapeutics. Nat Med 7(1):33–40

    Article  CAS  Google Scholar 

  3. Bessis N, GarciaCozar FJ, Boissier MC (2004) Immune responses to gene therapy vectors: influence on vector function and effector mechanisms. Gene Ther 11(Suppl 1):S10–S17

    Article  CAS  Google Scholar 

  4. Russell DW, Hirata RK (1998) Human gene targeting by viral vectors. Nat Genet 18(4):325–330

    Article  CAS  Google Scholar 

  5. Fields BN, Knipe DM, Howley PM (2007) Fields virology. Wolters Kluwer Health/Lippincott Williams & Wilkins, Philadelphia

    Google Scholar 

  6. Liu W, Liu Z, Cao X, Cao Z, Xue L, Zhu F et al (2007) Recombinant human foamy virus, a novel vector for neurological disorders gene therapy, drives production of GAD in cultured astrocytes. Mol Ther 15(10):1834–1841

    Article  CAS  Google Scholar 

  7. Weiss RA (1996) Reverse transcription. Foamy viruses bubble on. Nature 380(6571):201

    Article  CAS  Google Scholar 

  8. Hill CL, Bieniasz PD, McClure MO (1999) Properties of human foamy virus relevant to its development as a vector for gene therapy. J Gen Virol 80(Pt 8):2003–2009

    Article  CAS  Google Scholar 

  9. Maetzig T, Galla M, Baum C, Schambach A (2011) Gammaretroviral vectors: biology, technology and application. Viruses 3(6):677–713

    Article  Google Scholar 

  10. Barquinero J, Eixarch H, Perez-Melgosa M (2004) Retroviral vectors: new applications for an old tool. Gene Ther 11(Suppl 1):S3–S9

    Article  CAS  Google Scholar 

  11. Kraunus J, Zychlinski D, Heise T, Galla M, Bohne J, Baum C (2006) Murine leukemia virus regulates alternative splicing through sequences upstream of the 5′ splice site. J Biol Chem 281(49):37381–37390

    Article  CAS  Google Scholar 

  12. Zychlinski D, Erkelenz S, Melhorn V, Baum C, Schaal H, Bohne J (2009) Limited complementarity between U1 snRNA and a retroviral 5′ splice site permits its attenuation via RNA secondary structure. Nucleic Acids Res 37(22):7429–7440

    Article  CAS  Google Scholar 

  13. Sharma S, Miyanohara A, Friedmann T (2000) Separable mechanisms of attachment and cell uptake during retrovirus infection. J Virol 74(22):10790–10795

    Article  CAS  Google Scholar 

  14. Freed EO, Ross SR (2004) Retroviruses 2004: review of the 2004 cold Spring Harbor retroviruses conference. Retrovirology 1:25

    Article  Google Scholar 

  15. Fortin JF, Cantin R, Tremblay MJ (1998) T cells expressing activated LFA-1 are more susceptible to infection with human immunodeficiency virus type 1 particles bearing host-encoded ICAM-1. J Virol 72(3):2105–2112

    PubMed  PubMed Central  CAS  Google Scholar 

  16. Plochmann K, Horn A, Gschmack E, Armbruster N, Krieg J, Wiktorowicz T et al (2012) Heparan sulfate is an attachment factor for foamy virus entry. J Virol 86(18):10028–10035

    Article  CAS  Google Scholar 

  17. Overbaugh J, Miller AD, Eiden MV (2001) Receptors and entry cofactors for retroviruses include single and multiple transmembrane-spanning proteins as well as newly described glycophosphatidylinositol-anchored and secreted proteins. Microbiol Mol Biol Rev 65(3):371–389

    Article  CAS  Google Scholar 

  18. Sommerfelt MA (1999) Retrovirus receptors. J Gen Virol 80(Pt 12):3049–3064

    Article  CAS  Google Scholar 

  19. Miller AD (1996) Cell-surface receptors for retroviruses and implications for gene transfer. Proc Natl Acad Sci USA 93(21):11407–11413

    Article  CAS  Google Scholar 

  20. Fassati A, Goff SP (2001) Characterization of intracellular reverse transcription complexes of human immunodeficiency virus type 1. J Virol 75(8):3626–3635

    Article  CAS  Google Scholar 

  21. Telesnitsky A, Goff SP (1997) Reverse transcriptase and the generation of retroviral DNA. In: Coffin JM, Hughes SH, Varmus HE (eds) Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor

    Google Scholar 

  22. Trono D (1992) Partial reverse transcripts in virions from human immunodeficiency and murine leukemia viruses. J Virol 66(8):4893–4900

    PubMed  PubMed Central  CAS  Google Scholar 

  23. Zhu J, Cunningham JM (1993) Minus-strand DNA is present within murine type C ecotropic retroviruses prior to infection. J Virol 67(4):2385–2388

    PubMed  PubMed Central  CAS  Google Scholar 

  24. Roe T, Reynolds TC, Yu G, Brown PO (1993) Integration of murine leukemia virus DNA depends on mitosis. EMBO J 12(5):2099–2108

    Article  CAS  Google Scholar 

  25. Prizan-Ravid A, Elis E, Laham-Karam N, Selig S, Ehrlich M, Bacharach E (2010) The gag cleavage product, p12, is a functional constituent of the murine leukemia virus pre-integration complex. PLoS Pathog 6(11):e1001183

    Article  CAS  Google Scholar 

  26. Studamire B, Goff SP (2010) Interactions of host proteins with the murine leukemia virus integrase. Viruses 2(5):1110–1145

    Article  CAS  Google Scholar 

  27. Gruter P, Tabernero C, von Kobbe C, Schmitt C, Saavedra C, Bachi A et al (1998) TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus. Mol Cell 1(5):649–659

    Article  CAS  Google Scholar 

  28. Bogerd HP, Echarri A, Ross TM, Cullen BR (1998) Inhibition of human immunodeficiency virus rev and human T-cell leukemia virus rex function, but not Mason-Pfizer monkey virus constitutive transport element activity, by a mutant human nucleoporin targeted to Crm1. J Virol 72(11):8627–8635

    PubMed  PubMed Central  CAS  Google Scholar 

  29. Miller AD (1990) Retrovirus packaging cells. Hum Gene Ther 1(1):5–14

    Article  CAS  Google Scholar 

  30. Kim SH, Yu SS, Park JS, Robbins PD, An CS, Kim S (1998) Construction of retroviral vectors with improved safety, gene expression, and versatility. J Virol 72(2):994–1004

    PubMed  PubMed Central  CAS  Google Scholar 

  31. Hildinger M, Abel KL, Ostertag W, Baum C (1999) Design of 5′ untranslated sequences in retroviral vectors developed for medical use. J Virol 73(5):4083–4089

    PubMed  PubMed Central  CAS  Google Scholar 

  32. Yu SS, Kim JM, Kim S (2000) High efficiency retroviral vectors that contain no viral coding sequences. Gene Ther 7(9):797–804

    Article  CAS  Google Scholar 

  33. Sinn PL, Sauter SL, PB MC Jr (2005) Gene therapy progress and prospects: development of improved lentiviral and retroviral vectors--design, biosafety, and production. Gene Ther 12(14):1089–1098

    Article  CAS  Google Scholar 

  34. Zentilin L, Qin G, Tafuro S, Dinauer MC, Baum C, Giacca M (2000) Variegation of retroviral vector gene expression in myeloid cells. Gene Ther 7(2):153–166

    Article  CAS  Google Scholar 

  35. Bestor TH (2000) Gene silencing as a threat to the success of gene therapy. J Clin Investig 105(4):409–411

    Article  CAS  Google Scholar 

  36. Hantzopoulos PA, Sullenger BA, Ungers G, Gilboa E (1989) Improved gene expression upon transfer of the adenosine deaminase minigene outside the transcriptional unit of a retroviral vector. Proc Natl Acad Sci USA 86(10):3519–3523

    Article  CAS  Google Scholar 

  37. Miyoshi H, Blömer U, Takahashi M, Gage FH, Verma IM (1998) Development of a self-inactivating lentivirus vector. J Virol 72(10):8150–8157

    PubMed  PubMed Central  CAS  Google Scholar 

  38. Zufferey R, Dull T, Mandel RJ, Bukovsky A, Quiroz D, Naldini L et al (1998) Self-inactivating lentivirus vector for safe and efficient in vivo gene delivery. J Virol 72(12):9873–9880

    PubMed  PubMed Central  CAS  Google Scholar 

  39. Lori F, di Marzo Veronese F, de Vico AL, Lusso P, Reitz MS Jr, Gallo RC (1992) Viral DNA carried by human immunodeficiency virus type 1 virions. J Virol 66(8):5067–5074

    PubMed  PubMed Central  CAS  Google Scholar 

  40. Lewis PF, Emerman M (1994) Passage through mitosis is required for oncoretroviruses but not for the human immunodeficiency virus. J Virol 68(1):510–516

    PubMed  PubMed Central  CAS  Google Scholar 

  41. Schambach A, Baum C (2008) Clinical application of lentiviral vectors – concepts and practice. Curr Gene Ther 8(6):474–482

    Article  CAS  Google Scholar 

  42. Chang AH, Sadelain M (2007) The genetic engineering of hematopoietic stem cells: the rise of lentiviral vectors, the conundrum of the ltr, and the promise of lineage-restricted vectors. Mol Ther 15(3):445–456

    Article  CAS  Google Scholar 

  43. Aiken C (1997) Pseudotyping human immunodeficiency virus type 1 (HIV-1) by the glycoprotein of vesicular stomatitis virus targets HIV-1 entry to an endocytic pathway and suppresses both the requirement for Nef and the sensitivity to cyclosporin A. J Virol 71(8):5871–5877

    PubMed  PubMed Central  CAS  Google Scholar 

  44. Yamamoto T, Tsunetsugu-Yokota Y (2008) Prospects for the therapeutic application of lentivirus-based gene therapy to HIV-1 infection. Curr Gene Ther 8(1):1–8

    Article  CAS  Google Scholar 

  45. Naldini L, Blomer U, Gallay P, Ory D, Mulligan R, Gage FH et al (1996) In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 272(5259):263–267

    Article  CAS  Google Scholar 

  46. Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F (2002) HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110(4):521–529

    Article  CAS  Google Scholar 

  47. Nienhuis AW, Dunbar CE, Sorrentino BP (2006) Genotoxicity of retroviral integration in hematopoietic cells. Mol Ther 13(6):1031–1049

    Article  CAS  Google Scholar 

  48. Cereseto A, Giacca M (2004) Integration site selection by retroviruses. AIDS Rev 6(1):13–21

    PubMed  Google Scholar 

  49. Daniel R, Smith JA (2008) Integration site selection by retroviral vectors: molecular mechanism and clinical consequences. Hum Gene Ther 19(6):557–568

    Article  CAS  Google Scholar 

  50. Linial ML (1999) Foamy viruses are unconventional retroviruses. J Virol 73(3):1747–1755

    PubMed  PubMed Central  CAS  Google Scholar 

  51. Bodem J, Lochelt M, Yang P, Flugel RM (1997) Regulation of gene expression by human foamy virus and potentials of foamy viral vectors. Stem Cells 15(Suppl 1):141–147

    Article  CAS  Google Scholar 

  52. Schweizer M, Falcone V, Gange J, Turek R, Neumann-Haefelin D (1997) Simian foamy virus isolated from an accidentally infected human individual. J Virol 71(6):4821–4824

    PubMed  PubMed Central  CAS  Google Scholar 

  53. Meiering CD, Linial ML (2001) Historical perspective of foamy virus epidemiology and infection. Clin Microbiol Rev 14(1):165–176

    Article  CAS  Google Scholar 

  54. Herchenroder O, Renne R, Loncar D, Cobb EK, Murthy KK, Schneider J et al (1994) Isolation, cloning, and sequencing of simian foamy viruses from chimpanzees (SFVcpz): high homology to human foamy virus (HFV). Virology 201(2):187–199

    Article  CAS  Google Scholar 

  55. Müllers E (2013) The foamy virus gag proteins: what makes them different? Viruses 5(4):1023–1041

    Article  CAS  Google Scholar 

  56. Löchelt M, Yu SF, Linial ML, Flügel RM (1995) The human foamy virus internal promoter is required for efficientgene expression and infectivity. Virology 206(1):601–610

    Article  Google Scholar 

  57. Yang P, Zemba M, Aboud M, Flügel RM, Löchelt M (1997) Deletion analysis of both the long terminal repeat and the internal promoters of the human foamy virus. Virus Genes 15(1):17–23

    Article  CAS  Google Scholar 

  58. Kang Y, Blair WS, Cullen BR (1998) Identification and functional characterization of a high-affinity Bel-1 DNA binding site located in the human foamy virus internal promoter. J Virol 72(1):504–511

    PubMed  PubMed Central  CAS  Google Scholar 

  59. Azran I, Schavinsky-Khrapunsky Y, Aboud M (2004) Role of tax protein in human T-cell leukemia virus type-I leukemogenicity. Retrovirology 1:20

    Article  CAS  Google Scholar 

  60. Baunach G, Maurer B, Hahn H, Kranz M, Rethwilm A (1993) Functional analysis of human foamy virus accessory reading frames. J Virol 67(9):5411–5418

    PubMed  PubMed Central  CAS  Google Scholar 

  61. Lee AH, Lee HY, Sung YC (1994) The gene expression of human foamy virus does not require a post-transcriptional transactivator. Virology 204(1):409–413

    Article  CAS  Google Scholar 

  62. Muranyi W, Flugel RM (1991) Analysis of splicing patterns of human spumaretrovirus by polymerase chain reaction reveals complex RNA structures. J Virol 65(2):727–735

    PubMed  PubMed Central  CAS  Google Scholar 

  63. Hahn H, Baunach G, Brautigam S, Mergia A, Neumann-Haefelin D, Daniel MD et al (1994) Reactivity of primate sera to foamy virus gag and bet proteins. J Gen Virol 75(Pt 10):2635–2644

    Article  CAS  Google Scholar 

  64. Flugel RM (1991) Spumaviruses: a group of complex retroviruses. J Acquir Immune Defic Syndr 4(8):739–750

    PubMed  CAS  Google Scholar 

  65. Yu SF, Linial ML (1993) Analysis of the role of the bel and bet open reading frames of human foamy virus by using a new quantitative assay. J Virol 67(11):6618–6624

    PubMed  PubMed Central  CAS  Google Scholar 

  66. Bock M, Heinkelein M, Lindemann D, Rethwilm A (1998) Cells expressing the human foamy virus (HFV) accessory bet protein are resistant to productive HFV superinfection. Virology 250(1):194–204

    Article  CAS  Google Scholar 

  67. Moebes A, Enssle J, Bieniasz PD, Heinkelein M, Lindemann D, Bock M et al (1997) Human foamy virus reverse transcription that occurs late in the viral replication cycle. J Virol 71(10):7305–7311

    PubMed  PubMed Central  CAS  Google Scholar 

  68. Yu SF, Sullivan MD, Linial ML (1999) Evidence that the human foamy virus genome is DNA. J Virol 73(2):1565–1572

    PubMed  PubMed Central  CAS  Google Scholar 

  69. Erlwein O, McClure MO (2010) Progress and prospects: foamy virus vectors enter a new age. Gene Ther 17(12):1423–1429

    Article  CAS  Google Scholar 

  70. Trobridge GD (2009) Foamy virus vectors for gene transfer. Expert Opin Biol Ther 9(11):1427–1436

    Article  CAS  Google Scholar 

  71. Schmidt M, Rethwilm A (1995) Replicating foamy virus-based vectors directing high level expression of foreign genes. Virology 210(1):167–178

    Article  CAS  Google Scholar 

  72. Russell DW, Miller AD (1996) Foamy virus vectors. J Virol 70(1):217–222

    PubMed  PubMed Central  CAS  Google Scholar 

  73. Hirata RK, Miller AD, Andrews RG, Russell DW (1996) Transduction of hematopoietic cells by foamy virus vectors. Blood 88(9):3654–3661

    PubMed  CAS  Google Scholar 

  74. Trobridge GD, Russell DW (1998) Helper-free foamy virus vectors. Hum Gene Ther 9(17):2517–2525

    Article  CAS  Google Scholar 

  75. Heinkelein M, Dressler M, Jarmy G, Rammling M, Imrich H, Thurow J et al (2002) Improved primate foamy virus vectors and packaging constructs. J Virol 76(8):3774–3783

    Article  CAS  Google Scholar 

  76. Wiktorowicz T, Peters K, Armbruster N, Steinert AF, Rethwilm A (2009) Generation of an improved foamy virus vector by dissection of cis-acting sequences. J Gen Virol 90(Pt 2):481–487

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Everette Jacob Remington Nelson .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Nature Singapore Pte Ltd.

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Gopinath, C., Nathar, T.J., Nelson, E.J.R. (2018). Retroviral Vectors in Gene Therapy. In: Jayandharan, G. (eds) Gene and Cell Therapy: Biology and Applications. Springer, Singapore. https://doi.org/10.1007/978-981-13-0481-1_1

Download citation

Publish with us

Policies and ethics