Abstract
Alzheimer disease (AD) is the leading cause of dementia and accounts for 60–80% cases. Two main factors called β-amyloid (Aβ) plaques and tangles are prime suspects in damaging and killing nerve cells. However, oxidative stress, the process which produces free radicals in cells, is believed to promote its progression to the extent that it may responsible for the cognitive and functional decline observed in AD. As of today there are few FDA-approved drugs in the market for treatment, but their cholinergic adverse effect, potentially distressing toxicity and limited targets in AD pathology, limits their use. Therefore, it is crucial to find an effective compounds to combat AD. We choose 45 plant-derived natural compounds that have antioxidant properties to slow down disease progression by quenching free redicals or promoting endogenous antioxidant capacity. However, we performed molecular docking studies to investigate the binding interactions between natural compounds and 13 various anti-Alzheimer drug targets. Three known cholinesterase inhibitors (donepezil, galantamine and rivastigmine) were taken as reference drugs over natural compounds for comparison and drug-likeness studies. Few of these compounds showed good inhibitory activity besides antioxidant activity. Most of these compounds followed pharmacokinetic properties that make them potentially promising drug candidates for the treatment of Alzheimer disease.
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References
Ansari N, Khodagholi F (2013) Natural products as promising drug candidates for the treatment of Alzheimer’s disease: molecular mechanism aspect. Curr Neuropharmacol 11(4):414–429. https://doi.org/10.2174/1570159X11311040005
Badrul A, Ekramu H (n.d.) Anti-Alzheimer and antioxidant activity of celastrus paniculatus seed. Iran J Pharm Sci 7(1):49–56
Bencharit S, Morton CL, Hyatt JL, Kuhn P, Danks MK, Potter PM, Redinbo MR (2003) Crystal structure of human carboxylesterase 1 complexed with the Alzheimer’s drug tacrine: from binding promiscuity to selective inhibition. Chem Biol 10(4):341–349
Bhat R, Xue Y, Berg S, Hellberg S, Ormo M, Nilsson Y, … Avila J (2003) Structural insights and biological effects of glycogen synthase kinase 3-specific inhibitor AR-A014418. J Biol Chem 278(46):45937–45945. https://doi.org/10.1074/jbc.M306268200
Cao J, Gao H, Bemis G, Salituro F, Ledeboer M, Harrington E, … Green J (2009) Structure-based design and parallel synthesis of N-benzyl isatin oximes as JNK3 MAP kinase inhibitors. Bioorg Med Chem Lett 19(10):2891–2895. https://doi.org/10.1016/j.bmcl.2009.03.043
Cheung J, Rudolph MJ, Burshteyn F, Cassidy MS, Gary EN, Love J, … Height JJ (2012) Structures of human acetylcholinesterase in complex with pharmacologically important ligands. J Med Chem 55(22):10282–10286. https://doi.org/10.1021/jm300871x
Choi D-Y, Lee Y-J, Hong JT, Lee H-J (2012) Antioxidant properties of natural polyphenols and their therapeutic potentials for Alzheimer’s disease. Brain Res Bull 87(2–3):144–153. https://doi.org/10.1016/j.brainresbull.2011.11.014
Cumming JN, Smith EM, Wang L, Misiaszek J, Durkin J, Pan J, … Stamford AW (2012) Structure based design of iminohydantoin BACE1 inhibitors: identification of an orally available, centrally active BACE1 inhibitor. Bioorg Med Chem Lett 22(7):2444–2449. https://doi.org/10.1016/j.bmcl.2012.02.013
Drwal MN, Banerjee P, Dunkel M, Wettig MR, Preissner R (2014) ProTox: a web server for the in silico prediction of rodent oral toxicity. Nucleic Acids Res 42(W1):W53–W58. https://doi.org/10.1093/nar/gku401
Fedorov R, Hartmann E, Ghosh DK, Schlichting I (2003) Structural basis for the specificity of the nitric-oxide synthase inhibitors W1400 and N -propyl-L-Arg for the inducible and neuronal isoforms. J Biol Chem 278(46):45818–45825. https://doi.org/10.1074/jbc.M306030200
Feng Y, Wang X (2012) Antioxidant therapies for Alzheimer’s disease. Oxidative Med Cell Longev 2012:1–17. https://doi.org/10.1155/2012/472932
Furukawa H, Gouaux E (2003) Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core. EMBO J 22(12):2873–2885. https://doi.org/10.1093/emboj/cdg303
Grundman M, Grundman M, Delaney P (2002) Antioxidant strategies for Alzheimer’s disease. Proc Nutr Soc 61(2):191–202. https://doi.org/10.1079/PNS2002146
Johansson MU, Zoete V, Michielin O, Guex N (2012) Defining and searching for structural motifs using DeepView/Swiss-PdbViewer. BMC Bioinforma 13(1):173. https://doi.org/10.1186/1471-2105-13-173
Klugman A, Naughton DP, Isaac M, Shah I, Petroczi A, Tabet N (2012) Antioxidant enzymatic activities in Alzheimer’s disease: the relationship to acetylcholinesterase inhibitors. J Alzheimers Dis JAD 30(3):467–474. https://doi.org/10.3233/JAD-2012-120124
Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46(1–3):3–26
Manivannan J, Silambarasan T, Kadarkarairaj R, Raja B (2015) Systems pharmacology and molecular docking strategies prioritize natural molecules as cardioprotective agents. RSC Adv 5(94):77042–77055. https://doi.org/10.1039/C5RA10761J
Meng X-Y, Zhang H-X, Mezei M, Cui M (2011) Molecular docking: a powerful approach for structure-based drug discovery. Curr Comp Aided Drug Des 7(2):146–157. https://doi.org/10.2174/157340911795677602
Montine TJ, Amarnath V, Martin ME, Strittmatter WJ, Graham DG (1996) E-4-hydroxy-2-nonenal is cytotoxic and cross-links cytoskeletal proteins in P19 neuroglial cultures. Am J Pathol 148(1):89–93
Moroy G, Martiny VY, Vayer P, Villoutreix BO, Miteva MA (2012) Toward in silico structure-based ADMET prediction in drug discovery. Drug Discov Today 17(1–2):44–55. https://doi.org/10.1016/j.drudis.2011.10.023
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ (2009) AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem 30(16):2785–2791. https://doi.org/10.1002/jcc.21256
Newman DJ, Cragg GM (2012) Natural products as sources of new drugs over the 30 years from 1981 to 2010. J Nat Prod 75(3):311–335. https://doi.org/10.1021/np200906s
Niu X, Umland S, Ingram R, Beyer BM, Liu Y-H, Sun J, … Orth P (2006) IK682, a tight binding inhibitor of TACE. Arch Biochem Biophys 451(1):43–50. https://doi.org/10.1016/j.abb.2006.03.034
Sayre LM, Zelasko DA, Harris PL, Perry G, Salomon RG, Smith MA (1997) 4-Hydroxynonenal-derived advanced lipid peroxidation end products are increased in Alzheimer’s disease. J Neurochem 68(5):2092–2097
Selinsky BS, Gupta K, Sharkey CT, Loll PJ (2001) Structural analysis of NSAID binding by prostaglandin H2 synthase: time-dependent and time-independent inhibitors elicit identical enzyme conformations. Biochemistry 40(17):5172–5180
Sharma V, Sharma PC, Kumar V (2016) In silico molecular docking analysis of natural pyridoacridines as anticancer agents. Adv Chem 2016:1–9. https://doi.org/10.1155/2016/5409387
Smith CD, Carney JM, Starke-Reed PE, Oliver CN, Stadtman ER, Floyd RA, Markesbery WR (1991) Excess brain protein oxidation and enzyme dysfunction in normal aging and in Alzheimer disease. Proc Natl Acad Sci U S A 88(23):10540–10543
Smith MA, Taneda S, Richey PL, Miyata S, Yan SD, Stern D, … Perry G (1994) Advanced maillard reaction end products are associated with Alzheimer disease pathology. Proc Natl Acad Sci USA 91(12):5710–5714
Smith MA, Rudnicka-Nawrot M, Richey PL, Praprotnik D, Mulvihill P, Miller CA, … Perry G (1995) Carbonyl-related posttranslational modification of neurofilament protein in the neurofibrillary pathology of Alzheimer’s disease. J Neurochem 64(6):2660–2666
Smith MA, Richey Harris PL, Sayre LM, Beckman JS, Perry G (1997) Widespread peroxynitrite-mediated damage in Alzheimer’s disease. J Neurosci Off J Soc Neurosci 17(8):2653–2657
Sung B-J, Hwang KY, Jeon YH, Lee JI, Heo Y-S, Kim JH, … Cho JM (2003) Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules. Nature 425(6953):98–102. https://doi.org/10.1038/nature01914
Umukoro S, Adewole FA, Eduviere AT, Aderibigbe AO, Onwuchekwa C (2014) Free radical scavenging effect of donepezil as the possible contribution to its memory enhancing activity in mice. Drug Res 64(5):236–239. https://doi.org/10.1055/s-0033-1357126
Veber DF, Johnson SR, Cheng H-Y, Smith BR, Ward KW, Kopple KD (2002) Molecular properties that influence the oral bioavailability of drug candidates. J Med Chem 45(12):2615–2623
Vecchio AJ, Malkowski MG (2011) The structure of NS-398 bound to cyclooxygenase-2. J Struct Biol 176(2):254–258. https://doi.org/10.1016/j.jsb.2011.07.019
Wandhammer M, de Koning M, van Grol M, Loiodice M, Saurel L, Noort D, … Nachon F (2013) A step toward the reactivation of aged cholinesterases – crystal structure of ligands binding to aged human butyrylcholinesterase. Chem Biol Interact 203(1):19–23. https://doi.org/10.1016/j.cbi.2012.08.005
Watermeyer JM, Kröger WL, O’Neill HG, Sewell BT, Sturrock ED (2008) Probing the basis of domain-dependent inhibition using novel ketone inhibitors of angiotensin-converting enzyme. Biochemistry 47(22):5942–5950. https://doi.org/10.1021/bi8002605
Wolohan PRN, Clark RD (2003) Predicting drug pharmacokinetic properties using molecular interaction fields and SIMCA. J Comput Aided Mol Des 17(1):65–76
Zhao YH, Abraham MH, Le J, Hersey A, Luscombe CN, Beck G, … Cooper I (2002) Rate-limited steps of human oral absorption and QSAR studies. Pharm Res 19(10):1446–1457
Acknowledgements
The authors are grateful to the Centre for Interdisciplinary Research in Basic Sciences (CIRBSc), Jamia Millia Islamia for providing the research infrastructure.
Aftab Alam is supported by a research fellowship of the University Grants Commission, Government of India; SA and MZM are supported by the Indian Council of Medical Research under SRF (Senior Research Fellowship).
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Alam, A. et al. (2018). Pharmacokinetic and Molecular Docking Studies of Plant-Derived Natural Compounds to Exploring Potential Anti-Alzheimer Activity. In: Choudhary, D., Kumar, M., Prasad, R., Kumar, V. (eds) In Silico Approach for Sustainable Agriculture. Springer, Singapore. https://doi.org/10.1007/978-981-13-0347-0_13
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DOI: https://doi.org/10.1007/978-981-13-0347-0_13
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