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Recent Progress Toward RNA Manipulation with Engineered Pentatricopeptide Repeat Proteins

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Applied RNA Bioscience

Abstract

Pentatricopeptide repeat (PPR) proteins are RNA-binding proteins that are widely distributed in plants. They contain 2 to 30 repeating units of ~35-amino acid PPR motifs. They are known to play important roles in RNA processing, RNA editing, and translational regulation. Recent studies on the RNA recognition mode of PPR proteins revealed that one PPR motif interacts with one nucleotide. In addition, it was revealed that amino acids at three specific positions in a single motif serve to specify its binding base. Thus, mutation of these amino acids can cause a modification of the binding specificity of PPR motifs. Indeed, the engineered PPR motifs fused with various effector domains are shown to bind to and manipulate RNAs in a controlled manner. In this review, we summarize the recent progress in structural studies on PPR motifs. We focus on their RNA recognition mode and discuss the potentials of PPR as novel, versatile tools for RNA manipulation.

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Authors and Affiliations

  1. EditForce Inc, Fukuoka, Japan

    Takayoshi Imai, Yusuke Yagi & Takahiro Nakamura

  2. Faculty of Agriculture, Kyushu University, Fukuoka, Japan

    Takayoshi Imai, Yusuke Yagi & Takahiro Nakamura

Authors
  1. Takayoshi Imai
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  2. Yusuke Yagi
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  3. Takahiro Nakamura
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Corresponding author

Correspondence to Takayoshi Imai .

Editor information

Editors and Affiliations

  1. Graduate School of Biostudies, Kyoto University, Kyoto, Japan

    Seiji Masuda

  2. Applied Biology, Kyoto Institute of Technology, Kyoto, Japan

    Shingo Izawa

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Imai, T., Yagi, Y., Nakamura, T. (2018). Recent Progress Toward RNA Manipulation with Engineered Pentatricopeptide Repeat Proteins. In: Masuda, S., Izawa, S. (eds) Applied RNA Bioscience. Springer, Singapore. https://doi.org/10.1007/978-981-10-8372-3_10

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