Skip to main content
SpringerLink
Log in
Book cover

Functional Nucleic Acid Based Biosensors for Food Safety Detection pp 185–203Cite as

Functional Nucleic Acid Based Biosensors for Other Metal Ion Detection

  • Chapter
  • First Online:

  • 709 Accesses

Abstract

This chapter mainly introduces the functional nucleic acid detection methods of 12 other metal ions in addition to the previous three chapters. Functional nucleic acid as a detection element is mainly used to construct various functional nucleic acid biosensors. These 12 ions mainly include some active metals of the first and second main groups and three kinds of transition metals (Fe2+, Fe3+, Ni2+, Mn2+) as well as lanthanide ions and uranyl ions. Among them, there are many methods for detecting functional nucleic acids of potassium ions.

This is a preview of subscription content, log in via an institution.

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   179.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  1. S.F. Torabi, P. Wu, C.E. McGhee, L. Chen, K. Hwang, N. Zheng, J. Cheng, Y. Lu, In vitro selection of a sodium-specific DNAzyme and its application in intracellular sensing. Proc. Natl. Acad. Sci. 112(19), 5903–5908 (2015)

    Article  CAS  Google Scholar 

  2. W. Zhou, J. Ding, J. Liu, A highly specific sodium aptamer probed by 2-aminopurine for robust Na+ sensing. Nucleic Acids Res. 44(21), 10377–10385 (2016)

    Google Scholar 

  3. W. Zhou, R. Saran, Q. Chen, A new Na(+)-Dependent RNA-Cleaving DNAzyme with over 1000-fold rate acceleration by Ethanol. Chembiochem. 17(2), 159–163 (2016)

    Article  CAS  PubMed  Google Scholar 

  4. H. Sun, H. Chen, X. Zhang, Y. Liu, A. Guan, Q. Li, Q. Yang, Y. Shi, S. Xu, Y. Tang, Colorimetric detection of sodium ion in serum based on the G-quadruplex conformation related DNAzyme activity. Anal. Chim. Acta. 912, 133–138 (2016)

    Article  CAS  PubMed  Google Scholar 

  5. C.C. Huang, H.T. Chang, Aptamer-based fluorescence sensor for rapid detection of potassium ions in urine. Chem. Commun. 12, 1461–1463 (2008)

    Google Scholar 

  6. H. Qin, J. Ren, J. Wang, N.W. Luedtke, E. Wang, G-quadruplex-modulated fluorescence detection of potassium in the presence of a 3500-fold excess of sodium ions. Anal. Chem. 82(19), 8356–8360 (2010)

    Article  CAS  PubMed  Google Scholar 

  7. H. Ueyama, M. Takagi, S. Takenaka, A novel potassium sensing in aqueous media with a synthetic oligonucleotide derivative. Fluorescence resonance energy transfer associated with guanine quartet− potassium ion complex formation. J. Am. Chem. Soc. 124(48), 14286–14287 (2002)

    Article  CAS  PubMed  Google Scholar 

  8. X. Fan, H. Li, J. Zhao, F. Lin, L. Zhang, Y. Zhang, S. Yao, A novel label-free fluorescent sensor for the detection of potassium ion based on DNAzyme. Talanta. 89, 57–62 (2012)

    Article  CAS  PubMed  Google Scholar 

  9. A.E. Radi, C.K. O’Sullivan, Aptamer conformational switch as sensitive electrochemical biosensor for potassium ion recognition. Chem. Commun. 32, 3432–3434 (2006)

    Google Scholar 

  10. L. Yang, Z. Qing, C. Liu, Q. Tang, J. Li, S. Yang, J. Zheng, R. Yang, W. Tan, Direct fluorescent detection of blood potassium by ion-selective formation of intermolecular G-Quadruplex and ligand binding. Anal. Chem. 88(18), 9285–9292 (2016)

    Article  CAS  PubMed  Google Scholar 

  11. L. Liu, Y. Shao, J. Peng, C. Huang, H. Liu, L. Zhang, Molecular rotor-based fluorescent probe for selective recognition of hybrid G-quadruplex and as a K+ sensor. Anal. Chem. 86(3), 1622–1631 (2014)

    Article  CAS  PubMed  Google Scholar 

  12. T. Li, E. Wang, S. Dong, Parallel G-quadruplex-specific fluorescent probe for monitoring DNA structural changes and label-free detection of potassium ion. Anal. Chem. 82(18), 7576–7580 (2010)

    Article  CAS  PubMed  Google Scholar 

  13. Z.S. Wu, C.R. Chen, G.L. Shen, R.Q. Yu, Reversible electronic nanoswitch based on DNA G-quadruplex conformation: a platform for single-step, reagentless potassium detection. Biomaterials 29(17), 2689–2696 (2008)

    Article  CAS  PubMed  Google Scholar 

  14. S. Zhang, R. Zhang, B. Ma, J. Qiu, J. Li, Y. Sang, W. Liu, H. Liu, Specific detection of potassium ion in serum by a modified G-quadruplex method. RSC Adv. 6(48), 41999–42007 (2016)

    Article  CAS  Google Scholar 

  15. C.R. Hampton, H.C. Bowen, M.R. Broadley, J.P. Hammond, A. Mead, K.A. Payne, J. Pritchard, P.J. White, Cesium toxicity in Arabidopsis. Plant Physiol. 136(3), 3824–3837 (2004)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. J.C. Chaput, C. Switzer, A DNA pentaplex incorporating nucleobase quintets. Proc. Natl. Acad. Sci. 96(19), 10614–10619 (1999)

    Article  CAS  PubMed  Google Scholar 

  17. S. Lin, C. Yang, Z. Mao, B. He, Y.T. Wang, C.H. Leung, D.L. Ma, A G-pentaplex-based assay for Cs+ ions in aqueous solution using a luminescent Ir (III) complex. Biosens. Bioelectron. 77, 609–612 (2016)

    Article  CAS  PubMed  Google Scholar 

  18. A.R. Feldman, D. Sen, A new and efficient DNA enzyme for the sequence-specific cleavage of RNA. J. Mol. Biol. 313(2), 283–294 (2001)

    Article  CAS  PubMed  Google Scholar 

  19. W. Zhou, R. Saran, P.J.J. Huang, J. Ding, J. Liu, An exceptionally selective DNA cooperatively binding two Ca2+ ions. Chembiochem 18(6), 518–522 (2017)

    Article  CAS  Google Scholar 

  20. W. Zhou, Y. Zhang, J. Ding, J. Liu, In vitro selection in serum: RNA-cleaving DNAzymes for measuring Ca2+ and Mg2+. ACS Sens. 1(5), 600–606 (2016)

    Google Scholar 

  21. A. Peracchi, Preferential activation of the 8-17 deoxyribozyme by Ca2+ ions evidence for the identity of 8 to 17 with the catalytic domain of the MG5 deoxyribozyme. J. Biol. Chem. 275(16), 11693–11697 (2000)

    Article  CAS  PubMed  Google Scholar 

  22. P.-J.J. Huang, M. Vazin, Ż. Matuszek, J. Liu, A new heavy lanthanide-dependent DNAzyme displaying strong metal cooperativity and unrescuable phosphorothioate effect. Nucleic Acids Res. 43(1), 461–469 (2015)

    Article  CAS  PubMed  Google Scholar 

  23. P.J.J. Huang, J. Lin, J. Cao, M. Vazin, J. Liu, Ultrasensitive DNAzyme beacon for lanthanides and metal speciation. Anal. Chem. 86(3), 1816–1821 (2014)

    Article  CAS  PubMed  Google Scholar 

  24. R. Nishiyabu, N. Hashimoto, T. Cho, K. Watanabe, T. Yasunaga, A. Endo, K. Kaneko, T. Niidome, M. Murata, C. Adachi, Nanoparticles of adaptive supramolecular networks self-assembled from nucleotides and lanthanide ions. J. Am. Chem. Soc. 131(6), 2151–2158 (2009)

    Article  CAS  PubMed  Google Scholar 

  25. V. Dokukin, S.K. Silverman, Lanthanide ions as required cofactors for DNA catalysts. Chem. Sci. 3(5), 1707–1714 (2012)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. P.J.J. Huang, M. Vazin, J. Liu, In vitro selection of a new lanthanide-dependent DNAzyme for ratiometric sensing lanthanides. Anal. Chem. 86(19), 9993–9999 (2014)

    Article  CAS  PubMed  Google Scholar 

  27. P. Zhou, B. Gu, Extraction of oxidized and reduced forms of uranium from contaminated soils: Effects of carbonate concentration and pH. Environ. Sci. Technol. 39(12), 4435–4440 (2005)

    Article  CAS  PubMed  Google Scholar 

  28. J. Liu, A.K. Brown, Meng X. A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity. Proc. Natl. Acad. Sci. U S A. 104(7), 2056–2061 (2007)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. S. Basu, A.A. Szewczak, M. Cocco, S.A. Strobel, Direct detection of monovalent metal ion binding to a DNA G-quartet by 205Tl NMR. J. Am. Chem. Soc. 122(13), 3240–3241 (2000)

    Article  CAS  Google Scholar 

  30. M. Hoang, P.J.J. Huang, J. Liu, G-quadruplex DNA for fluorescent and colorimetric detection of thallium (I). ACS Sens. 1(2), 137–143 (2015)

    Article  CAS  Google Scholar 

  31. P.J.J. Huang, M. Vazin, J. Liu, Desulfurization activated phosphorothioate DNAzyme for the detection of thallium. Anal. Chem. 87(20), 10443–10449 (2015)

    Article  CAS  PubMed  Google Scholar 

  32. M. Zhang, Y.Q. Liu, B.C. Ye, Mononucleotide-modified metal nanoparticles: an efficient colorimetric probe for selective and sensitive detection of aluminum (III) on living cellular surfaces. Chem Eur J 18(9), 2507–2513 (2012)

    Article  CAS  PubMed  Google Scholar 

  33. Z. Liu, S.H. Mei, J.D. Brennan, Y. Li, Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences. J. Am. Chem. Soc. 125(25), 7539–7545 (2003)

    Article  CAS  PubMed  Google Scholar 

  34. W. Zhou, R. Saran, J. Liu, Metal Sensing by DNA. Chem. Rev. 117(12), 8272 (2017)

    Article  CAS  PubMed  Google Scholar 

  35. Y. Shi, G. Zhao, W. Kong, Genetic analysis of riboswitch-mediated transcriptional regulation responding to Mn2+ in salmonella. J. Biol. Chem. 289(16), 11353–11366 (2014)

    Article  CAS  PubMed  Google Scholar 

  36. M. Dambach, M. Sandoval, T.B. Updegrove, V. Anantharaman, L. Aravind, L.S. Waters, G. Storz, The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element. Mol. Cell 57(6), 1099–1109 (2015)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  37. P. Aich, S.L. Labiuk, L.W. Tari, L.J. Delbaere, W.J. Roesler, K.J. Falk, R.P. Steer, J.S. Lee, M-DNA: a complex between divalent metal ions and DNA which behaves as a molecular wire. J. Mol. Biol. 294(2), 477–485 (1999)

    Article  CAS  PubMed  Google Scholar 

  38. H.P. Hofmann, S. Limmer, V. Hornung, M. Sprinzl, Ni2+-binding RNA motifs with an asymmetric purine-rich internal loop and a GA base pair. RNA 3(11), 1289–1300 (1997)

    Google Scholar 

  39. L. Lanceta, J.M. Mattingly, C. Li, J.W. Eaton, How heme oxygenase-1 prevents heme-induced cell death. PLoS One 10(8), e0134144 (2015)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. M.W. Hentze, L.C. Kühn, Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress. Proc. Natl. Acad. Sci. U S A. 93(16), 8175–8182 (1996)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Food Science &Nutritional Engineering, China Agricultural University, Beijing, China

    Yunbo Luo

Authors
  1. Yunbo Luo
    View author publications

    You can also search for this author in PubMed Google Scholar

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Nature Singapore Pte Ltd.

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Luo, Y. (2018). Functional Nucleic Acid Based Biosensors for Other Metal Ion Detection. In: Functional Nucleic Acid Based Biosensors for Food Safety Detection. Springer, Singapore. https://doi.org/10.1007/978-981-10-8219-1_7

Download citation

Publish with us

Policies and ethics

Search

Navigation