Perspectives in High-Throughput Phenotyping of Qualitative Traits at the Whole-Plant Level

Sytar, Oksana; Zivcak, Marek; Olsovska, Katarina; Brestic, Marian

doi:10.1007/978-981-10-6934-5_10

Oksana Sytar^3,4,
Marek Zivcak⁵,
Katarina Olsovska⁵ &
…
Marian Brestic⁵

942 Accesses
1 Citations

Abstract

Recent advances in technology have enabled the rapid development of high-throughput automated and semi-automated field and laboratory phenotyping platforms worldwide. In this review, we discuss possible ways of matching the qualitative traits of the above-ground parts of crop plants, also defining the target traits and possible approaches that would be useful in automated phenotyping systems. Optical tools based on light reflectance are presented as a high-throughput and low-cost alternative to some destructive analytical methods. Special attention is paid to hyperspectral imaging and its integration in high-throughput phenotyping systems, as well as its special applications for the assessment of specific plant material traits associated with food quality.

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Abbreviations

DESI-MSI:: Desorption electrospray ionization mass spectrometry imaging
DNA:: Deoxyribonucleic acid
ESI:: Electrospray ionization
FAO:: Food and Agriculture Organization of the United Nations
HPLC-MS:: High-performance liquid chromatography–mass spectrometry
HSI:: Hyperspectral imaging
IR light:: Infrared light
LEDI:: Lettuce decay indices
MALDI:: Matrix-assisted laser desorption ionization
MS:: Mass spectrometry
MSI:: Mass spectrometry imaging
NIR light:: Near-infrared light
NMR:: Nuclear magnetic resonance
PCA:: Principal component analysis
PMT:: Photomultiplier tube
QTL:: Quantitative trait locus
RGB camera:: Red–green–blue camera
SVDD:: Support vector data description
SWIR light:: Short-wave infrared light
TIR light:: Thermal infrared light
TNC:: Total nitrogen content
TOF:: Time-of-flight (mass spectrometer)

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Acknowledgments

This work was supported by the research project of the Scientific Grant Agency of the Slovak Republic VEGA- 1-0923-16 and APVV-15-0721.

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Department of Plant Physiology, Slovak University of Agriculture in Nitra, Nitra, Slovak Republic
Oksana Sytar
Plant Physiology and Ecology Department, Institute of Biology, Taras Shevchenko National University of Kyiv, Kyiv, Ukraine
Oksana Sytar
Slovak University of Agriculture in Nitra, Nitra, Slovak Republic
Marek Zivcak, Katarina Olsovska & Marian Brestic

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Rakesh Singh Sengar
Department of Agricultural Biotechnology College of Agriculture, S.V.P University of Agriculture & Technology, Meerut, Uttar Pradesh, India
Ashu Singh

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Sytar, O., Zivcak, M., Olsovska, K., Brestic, M. (2018). Perspectives in High-Throughput Phenotyping of Qualitative Traits at the Whole-Plant Level. In: Sengar, R., Singh, A. (eds) Eco-friendly Agro-biological Techniques for Enhancing Crop Productivity. Springer, Singapore. https://doi.org/10.1007/978-981-10-6934-5_10

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