Abstract
Consensus clustering is a class of robust clustering algorithms, which obtain the finally clustering results based on multiple existing basic partitionings. In this study, we introduce the K-medoids algorithm and the cell-like P systems with promoters and inhibiters (a class of parallel and distributed computing models) to the consensus clustering, and propose the K-medoids-based consensus clustering based on the cell-like P system with promoters and inhibiters. Through the experiment, the proposed consensus clustering algorithm can obtain high quality clustering results in a short time. This study improves the result in TKDE, 2015, 2, 155–169.
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References
Strehl, A., Ghosh, J.: Cluster ensembles - a knowledge reuse framework for combining multiple partitions. J. Mach. Learn. Res. 3(12), 583–617 (2002)
Sandro, V., Jose, R.: A survey of clustering ensemble algorithm. Int. J. Pattern Recogn. Artif. Intell. 25(3), 337–372 (2011)
Abdala, D.D., Wattuya, P., Jiang, X.: Ensemble clustering via random walker consensus strategy. In: International Conference on Pattern Recognition, pp. 1433–1436 (2010)
Zhou, P., Du, L., Wang, H., Shi, L., Shen, Y.: Learning a robust consensus matrix for clustering ensemble via Kullback-Leibler divergence minimization. In: International Conference on Artificial Intelligence, pp. 4112–4118 (2015)
Huang, D., Lai, J., Wang, C.: Robust ensemble clustering using probability trajectories. IEEE Trans. Knowl. Data Eng. 28(5), 1312–1326 (2016)
Xanthopoulos, P.: A review on consensus clustering methods. Optim. Sci. Eng. 8(5), 553–566 (2014)
Mirkin, B.G., Shestakov, A.: Least square consensus clustering: criteria, methods, experiments. Adv. Inf. Retr. 7814, 764–767 (2013)
Saeed, F., Salim, N., Abdo, A.: Voting-based consensus clustering for combining multiple clusterings of chemical structures. J. Cheminform. 4(1), 165–178 (2012)
Wu, J., Liu, H., Xiong, H., Cao, J., Chen, J.: K-means-based consensus clustering: a unified view. IEEE Trans. Knowl. Data Eng. 27(1), 155–169 (2015)
Kaufman, L., Rousseeuw, P.J.: Finding Groups in Data. An Introduction to Cluster Analysis. Wiley, New York (1990)
Păun, G.: Computing with membranes. J. Comput. Syst. Sci. 61(1), 108–143 (2000)
Păun, G., Rozenberg, G., Salomaa, A.: The Oxford Handbook of Membrane Computing. Oxford University Press, Oxford (2010)
Marti, C., Păun, G., Pazos, J.: Tissue P systems. Theoret. Comput. Sci. 296(2), 295–326 (2003)
Ionescu, M., Păun, G., Yokomori, T.: Spiking neural P systems. Fundamenta Informaticae 71(2), 279–308 (2006)
Song, T., Wang, X.: Homogenous spiking neural P systems with inhibitory synapses. Neural Process. Lett. 42(1), 199–214 (2015)
Song, T., Pan, L.: Spiking neural P systems with rules on synapses working in maximum spikes consumption strategy. IEEE Trans. Nanobiosci. 14(1), 38–44 (2015)
Song, T., Pan, L.: Spiking neural P systems with rules on synapses working in maximum spiking strategy. IEEE Trans. Nanobiosci. 14(4), 465–477 (2015)
Cavaliere, M., Ibarra, O.H., Păun, G., Egecioglu, O., Ionescu, M., Woodworth, S.: Asynchronous spiking neural P systems. Theoret. Comput. Sci. 410(24), 2352–2364 (2009)
Song, T., Pan, L.: Spiking neural P systems with request rules. Neurocomputing 193(12), 193–200 (2016)
Song, T., Zheng, P., Wong, M.L.D., Wang, X.: Design of logic gates using spiking neural P systems with homogeneous neurons and astrocytes-like control. Inf. Sci. 372, 380–391 (2016). doi:10.1016/j.ins.2016.08.055
Song, T., Liu, X., Zhao, Y., Zhang, X.: Spiking neural P systems with white hole neurons. IEEE Trans. Nanobiosci. (2016). doi:10.1109/TNB.2016.2598879
Zhang, X., Pan, L., Păun, A.: On the universality of axon P systems. IEEE Trans. Neural Netw. Learn. Syst. 26(11), 2816–2829 (2015)
Zeng, X., Zhang, X., Song, T., Pan, L.: Spiking neural P systems with thresholds. Neural Comput. 26(7), 1340–1361 (2014)
Zhang, X., Wang, B., Pan, L.: Spiking neural P systems with a generalized use of rules. Neural Comput. 26(12), 2925–2943 (2014)
Zeng, X., Zhang, X., Pan, L.: Homogeneous spiking neural P systems. Fundamenta Informaticae 97(1), 275–294 (2009)
Song, T., Zou, Q., Zeng, X., Liu, X.: Asynchronous spiking neural P systems with rules on synapses. Neurocomputing 151(1), 1439–1445 (2015)
Ibarra, O.H., Păun, A., Rodríguez-Patón, A.: Sequential SNP systems based on min/max spike number. Theoret. Comput. Sci. 410(30), 2982–2991 (2009)
Song, T., Xu, J., Pan, L.: On the universality and non-nniversality of spiking neural P systems with rules on synapses. IEEE Trans. Nanobiosci. 14(8), 960–966 (2015)
Wang, X., Song, T., Gong, F., Zheng, P.: On the computational power of spiking neural P systems with self-organization. Sci. Rep. 6, 27624 (2016). doi:10.1038/srep27624
Zhang, X., Liu, Y., Luo, B., Pan, L.: Computational power of tissue P systems for generating control languages. Inf. Sci. 278(10), 285–297 (2014)
Zeng, X., Xu, L., Liu, X., Pan, L.: On languages generated by spiking neural P systems with weights. Inf. Sci. 278(10), 423–433 (2014)
Romero-Campero, F.J., Pérez-Jiménez, M.J.: Modelling gene expression control using P systems: the Lac Operon, a case study. Biosystems 91(3), 438–457 (2008)
Bel Enguix, G.: Preliminaries about some possible applications of P systems in linguistics. In: PĂun, G., Rozenberg, G., Salomaa, A., Zandron, C. (eds.) WMC 2002. LNCS, vol. 2597, pp. 74–89. Springer, Heidelberg (2003). doi:10.1007/3-540-36490-0_6
Enguix, G.B.: Unstable P systems: applications to linguistics. In: Mauri, G., Păun, G., Pérez-Jiménez, M.J., Rozenberg, G., Salomaa, A. (eds.) WMC 2004. LNCS, vol. 3365, pp. 190–209. Springer, Heidelberg (2005). doi:10.1007/978-3-540-31837-8_11
Song, T., Liu, X., Zeng, X.: Asynchronous spiking neural P systems with anti-spikes. Neural Process. Lett. 42(3), 633–647 (2015)
Díaz-Pernil, D., Berciano, A., Pena-Cantillana, F., GutiéRrez-Naranjo, M.A.: Segmenting images with gradient-based edge detection using membrane computing. Pattern Recogn. Lett. 34(8), 846–855 (2013)
Song, T., Zheng, H., He, J.: Solving vertex cover problem by tissue P systems with cell division. Appl. Math. Inf. Sci. 8(1), 333–337 (2014)
Păun, G., Păun, R.: Membrane computing and economics: numerical P systems. Fundamenta Informaticae 73(1,2), 213–227 (2006)
Păun, G.: A quick introduction to membrane computing. J. Log. Algebr. Program. 79(1), 291–294 (2010)
Acknowledgment
This work is supported by the Natural Science Foundation of China (Nos. 61170038, 61472231, 61402187, 61502535, 61572522 and 61572523).
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Liu, X., Zhao, Y., Sun, W. (2016). K-Medoids-Based Consensus Clustering Based on Cell-Like P Systems with Promoters and Inhibitors. In: Gong, M., Pan, L., Song, T., Zhang, G. (eds) Bio-inspired Computing – Theories and Applications. BIC-TA 2016. Communications in Computer and Information Science, vol 681. Springer, Singapore. https://doi.org/10.1007/978-981-10-3611-8_11
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DOI: https://doi.org/10.1007/978-981-10-3611-8_11
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