Abstract
RNA interference (RNAi) is emerging as a new technology for use in arthropod pest management. Unique features of RNAi-based methods including the specificity to the target pests and ability to knock down genes associated with insecticide resistance make this technology superior to the currently used pest management methods. The RNAi works best in coleopteran insects and also works well in some hemipteran insects. The RNAi does not work well in dipterans and lepidopteron insects. The RNAi could be used to study biology of insects, identify new target sites, fight insecticide resistance, regulate metabolism, produce sterile male insects, and suppress insect pest’s populations. In the near future, further research to improve RNAi in insects belonging to Hemiptera, Lepidoptera, and other orders will lead to development of efficient and cheaper methods for production and delivery of double-stranded RNA, understanding potential for resistance development and effects on nontarget organisms. This will help in moving RNAi technology to field applications.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Agaisse H, Burrack LS, Philips JA, Rubin EJ, Perrimon N, Higgins DE (2005) Genome-wide RNAi screen for host factors required for intracellular bacterial infection. Science 309:1248–1251
Aikins MJ, Schooley DA, Begum K, Detheux M, Beeman RW, Park Y (2008) Vasopressin-like peptide and its receptor function in an indirect diuretic signaling pathway in the red flour beetle. Insect Biochem Mol Biol 38:740–748
Arakane Y, Muthukrishnan S, Kramer KJ, Specht CA, Tomoyasu Y, Lorenzen MD, Kanost M, Beeman RW (2005) The Tribolium chitin synthase genes TcCHS1 and TcCHS2 are specialized for synthesis of epidermal cuticle and midgut peritrophic matrix. Insect Mol Biol 14:453–463
Arakane Y, Specht CA, Kramer KJ, Muthukrishnan S, Beeman RW (2008) Chitin synthases are required for survival, fecundity and egg hatch in the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol 38:959–962
Ashok M, Turner C, Wilson TG (1998) Insect juvenile hormone resistance gene homology with the bHLH-PAS family of transcriptional regulators. Proc Natl Acad Sci U S A 95:2761–2766
Baeg GH, Zhou R, Perrimon N (2005) Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila. Genes Dev 19:1861–1870
Bai JW, Sepp KJ, Perrimon N (2009) Culture of Drosophila primary cells dissociated from gastrula embryos and their use in RNAi screening. Nat Protoc 4:1502–1512
Bai H, Zhu F, Shah K, Palli SR (2011) Large-scale RNAi screen of G protein-coupled receptors involved in larval growth, molting and metamorphosis in the red flour beetle. BMC Genomics 12:388
Baum JA, Bogaert T, Clinton W, Heck GR, Feldmann P, Ilagan O, Johnson S, Plaetinck G, Munyikwa T, Pleau M, Vaughn T, Roberts J (2007) Control of coleopteran insect pests through RNA interference. Nat Biotechnol 25:1322–1326
Bitra K, Palli SR (2010) The members of bHLH transcription factor superfamily are required for female reproduction in the red flour beetle, Tribolium castaneum. J Insect Physiol 56:1481–1489
Bitra K, Tan A, Dowling A, Palli SR (2009) Functional characterization of PAS and HES family bHLH transcription factors during the metamorphosis of the red flour beetle, Tribolium castaneum. Gene 448:74–87
Brown AE, Bugeon L, Crisanti A, Catteruccia F (2003) Stable and heritable gene silencing in the male vector Anopheles stephensi. Nucleic Acids Res 31:1–6
Bucher G, Scholten J, Klingler M (2002) Parental RNAi in Tribolium (Coleoptera). Curr Biol 12:R85–R86
Cerny AC, Grossmann D, Bucher G, Klingler M (2008) The Tribolium ortholog of knirps and knirps-related is crucial for head segmentation but plays a minor role during abdominal patterning. Dev Biol 321:284–294
Cherry S, Doukas T, Armknecht S, Whelan S, Wang H, Sarnow P, Perrimon N (2005) Genome-wide RNAi screen reveals a specific sensitivity of IRES-containing RNA viruses to host translation inhibition. Genes Dev 19:445–452
Choe CP, Miller SC, Brown SJ (2006) A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum. Proc Natl Acad Sci U S A 103:6560–6564
Christiaens O, Swevers L, Smagghe G (2014) DsRNA degradation in the pea aphid (Acyrthosiphon pisum) associated with lack of response in RNAi feeding and injection assay. Peptides 53:307–314
Cogoni C, Irelan JT, Schumacher M, Schmidhauser TJ, Selker EU, Macino G (1996) Transgene silencing of the al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation. EMBO J 15:3153–3163
DasGupta R, Kaykas A, Moon RT, Perrimon N (2005) Functional genomic analysis of the Wnt-Wingless signaling pathway. Science 308:826–833
DasGupta R, Nybakken K, Booker M, Mathey-Prevot B, Gonsalves F, Changkakoty B, Perrimon N (2007) A case study of the reproducibility of transcriptional reporter cell-based RNAi screens in Drosophila. Genome Biol 8(9):R203
Ding SW (2005) RNAi: mechanisms, biology and applications. FEBS Lett 579:5821–5821
Dykxhoorn DM, Novina CD, Sharp PA (2003) Killing the messenger: short RNAs that silence gene expression. Nat Rev Mol Cell Biol 4:457–467
Echeverri CJ, Perrimon N (2006) High-throughput RNAi screening in cultured cells: a user’s guide. Nat Rev Genet 7:373–384
Eggert US, Kiger AA, Richter C, Perlman ZE, Perrimon N, Mitchison TJ, Field CM (2004) Parallel chemical genetic and genome-wide RNAi screens identify cytokinesis inhibitors and targets. PLoS Biol 2:2135–2143
Elbashir SM, Lendeckel W, Tuschl T (2001a) RNA interference is mediated by 21-and 22-nucleotide RNAs. Genes Dev 15:188–200
Elbashir SM, Martinez J, Patkaniowska A, Lendeckel W, Tuschl T (2001b) Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J 20:6877–6888
Farzana L, Brown SJ (2008) Hedgehog signaling pathway function conserved in Tribolium segmentation. Dev Genes Evol 218:181–192
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806–811
Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B (2006) FlyRNAi: the Drosophila RNAi screening center database. Nucleic Acids Res 34:D489–D494
Hannon GJ (2002) RNA interference. Nature 418:244–251
Hoa NT, Keene KM, Olson KE, Zheng L (2003) Characterization of RNA interference in an Anopheles gambiae cell line. Insect Biochem Mol Biol 33:949–957
Hope IA (2001) RNAi surges on: application to cultured mammalian cells. Trends Genet 17:440
Jorgensen R (1992) Silencing of plant genes by homologous transgenes. AgBiotech News Inform 4:265N–273N
Kamath RS, Ahringer J (2003) Genome-wide RNAi screening in Caenorhabditis elegans. Methods 30:313–321
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, Welchman DP, Zipperlen P, Ahringer J (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421:231–237
Kayukawa T, Tateishi K, Shinoda T (2013) Establishment of a versatile cell line for juvenile hormone signaling analysis in Tribolium castaneum. Sci Rep 3:1570
Kong Y, Liu XP, Wan PJ, Shi XQ, Guo WC, Li GQ (2014) The P450 enzyme Shade mediates the hydroxylation of ecdysone to 20-hydroxyecdysone in the Colorado potato beetle, Leptinotarsa decemlineata. Insect Mol Biol 21(2):147–58
Konopova B, Jindra M (2007) Juvenile hormone resistance gene Methoprene-tolerant controls entry into metamorphosis in the beetle Tribolium castaneum. Proc Natl Acad Sci U S A 104:10488–10493
Li XX, Zhang MY, Zhang HY (2011) RNA interference of four genes in adult Bactrocera dorsalis by feeding their dsRNAs. PLoS One 66:e17788
Lu JR, Ruhf ML, Perrimon N, Leder P (2007) A genome-wide RNA interference screen identifies putative chromatin regulators essential for E2F repression. Proc Natl Acad Sci U S A 104:9381–9386
Luo Y, Wang XH, Yu D, Kang L (2012) The SID-1 double-stranded RNA transporter is not required for systemic RNAi in the migratory locust. RNA Biol 9:663–671
Luo Y, Wang X, Wang X, Yu D, Chen B, Kang L (2013) Differential responses of migratory locusts to systemic RNA interference via double-stranded RNA injection and feeding. Insect Mol Biol 22:574–583
Mao YB, Cai WJ, Wang JW, Hong GJ, Tao XY, Wang LJ, Huang YP, Chen XY (2007) Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nat Biotechnol 25:1307–1313
Mao YB, Tao XY, Xue XY, Wang LJ, Chen XY (2011) Cotton plants expressing CYP6AE14 double-stranded RNA show enhanced resistance to bollworms. Transgenic Res 20:665–673
Marie B, Bacon JP, Blagburn JM (2000) Double-stranded RNA interference shows that Engrailed controls the synaptic specificity of identified sensory neurons. Curr Biol 10:289–292
McCaffrey AP, Meuse L, Pham TT, Conklin DS, Hannon GJ, Kay MA (2002) RNA interference in adult mice. Nature 418:38–39
Means JC, Muro I, Clem RJ (2003) Silencing of the baculovirus Op-iap3 gene by RNA interference reveals that it is required for prevention of apoptosis during Orgyia pseudotsugata M nucleopolyhedrovirus infection of Ld652Y cells. J Virol 77:4481–4488
Minakuchi C, Namiki T, Yoshiyama M, Shinoda T (2008) RNAi-mediated knockdown of juvenile hormone acid O-methyltransferase gene causes precocious metamorphosis in the red flour beetle Tribolium castaneum. FEBS J 275:2919–2931
Mishra S, Ande SR, Nyomba BLG (2010) The role of prohibitin in cell signaling. FEBS J 277:3937–3946
Misquitta L, Paterson BM (1999) Targeted disruption of gene function in Drosophila by RNA interference (RNA-i): a role for nautilus in embryonic somatic muscle formation. Proc Natl Acad Sci U S A 96:1451–1456
Montgomery MK, Xu S, Fire A (1998) RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans. Proc Natl Acad Sci U S A 95:15502–15507
Moss EG (2001) RNA interference: it’s a small RNA world. Curr Biol 11:R772–R775
Napoli C, Lemieux C, Jorgensen R (1990) Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans. Plant Cell 2:279–289
Ni JQ, Liu LP, Binari R, Hardy R, Shim HS, Cavallaro A, Booker M, Pfeiffer BD, Markstein M, Wang H, Villalta C, Laverty TR, Perkins LA, Perrimon N (2009) A drosophila resource of transgenic RNAi lines for neurogenetics. Genetics 182:1089–1100
Niu BL, Shen WF, Liu Y, Weng HB, He LH, Mu JJ, Wu ZL, Jiang P, Tao YZ, Meng ZQ (2008) Cloning and RNAi-mediated functional characterization of MaLac2 of the pine sawyer, Monochamus alternatus. Insect Mol Biol 17:303–312
Nykanen A, Haley B, Zamore PD (2001) ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107:309–321
Ober KA, Jockusch EL (2006) The roles of wingless and decapentaplegic in axis and appendage development in the red flour beetle, Tribolium castaneum. Dev Biol 294:391–405
Ochoa-Campuzano C, Martinez-Ramirez AC, Contreras E, Rausell C, Real MD (2013) Prohibitin, an essential protein for Colorado potato beetle larval viability, is relevant to Bacillus thuringiensis Cry3Aa toxicity. Pestic Biochem Physiol 107:299–308
Parthasarathy R, Palli SR (2008) Proliferation and differentiation of intestinal stem cells during metamorphosis of the red flour beetle, Tribolium castaneum. Dev Dyn 237:893–908
Parthasarathy R, Palli SR (2011) Molecular analysis of nutritional and hormonal regulation of female reproduction in the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol 41:294–305
Parthasarathy R, Tan A, Palli SR (2008) bHLH-PAS family transcription factor methoprene-tolerant plays a key role in JH action in preventing the premature development of adult structures during larval-pupal metamorphosis. Mech Dev 125:601–616
Parthasarathy R, Sheng Z, Sun Z, Palli SR (2010a) Ecdysteroid regulation of ovarian growth and oocyte maturation in the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol 40:429–439
Parthasarathy R, Sun Z, Bai H, Palli SR (2010b) Juvenile hormone regulation of vitellogenin synthesis in the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol 40:405–414
Perrimon N, Mathey-Prevot B (2007a) Applications of high-throughput RNA interference screens to problems in cell and developmental biology. Genetics 175:7–16
Perrimon N, Mathey-Prevot B (2007b) Matter arising – off targets and genome scale RNAi screens in Drosophila. Fly 1:1–5
Perrimon N, Ni JQ, Perkins L (2010) In vivo RNAi: today and tomorrow. Cold Spring Harb Perspect Biol 2(8):a003640
Pitino M, Coleman AD, Maffei ME, Ridout CJ, Hogenhout SA (2011) Silencing of aphid genes by dsRNA feeding from plants. PLoS One 6:e25709
Powers AM, Higgs S, Olson KE, Carlson JO, Beaty BJ (1994) Interference to La Crosse virus superinfection by an antisense RNA generated from an infectious Sindbis virus vector. Virus Res 32:57–67
Powers AM, Kamrud KI, Olson KE, Higgs S, Carlson JO, Beaty BJ (1996) Molecularly engineered resistance to California serogroup virus replication in mosquito cells and mosquitoes. Proc Natl Acad Sci U S A 93:4187–4191
Ren D, Cai Z, Song J, Wu Z, Zhou S (2014) dsRNA uptake and persistence account for tissue-dependent susceptibility to RNA interference in the migratory locust, Locusta migratoria. Insect Mol Biol 23:175–184
Schroder R (2003) The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium. Nature 422:621–625
Sepp KJ, Hong P, Lizarraga SB, Liu JS, Mejia LA, Walsh CA, Perrimon N (2008) Identification of neural outgrowth genes using genome-wide RNAi. PLoS Genet 4:e1000111
Sheng Z, Xu J, Bai H, Zhu F, Palli SR (2011) Juvenile hormone regulates vitellogenin gene expression through insulin-like peptide signaling pathway in the red flour beetle, Tribolium castaneum. J Biol Chem 286:41924–41936
Shukla JN, Palli SR (2012a) Doublesex target genes in the red flour beetle, Tribolium castaneum. Sci Rep 2:948
Shukla JN, Palli SR (2012b) Sex determination in beetles: production of all male progeny by parental RNAi knockdown of transformer. Sci Rep 2:602
Shukla JN, Palli SR (2013) Tribolium castaneum Transformer-2 regulates sex determination and development in both males and females. Insect Biochem Mol Biol 43:1125–1132
Shukla JN, Palli SR (2014) Production of all female progeny: evidence for the presence of the male sex determination factor on the Y chromosome. J Exp Biol 217:1653–1655
Tan A, Palli SR (2008) Identification and characterization of nuclear receptors from the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol 38:430–439
Thakur N, Upadhyay SK, Verma PC, Chandrashekar K, Tuli R, Singh PK (2014) Enhanced Whitefly Resistance in Transgenic Tobacco Plants Expressing Double Stranded RNA of v-ATPase A Gene. PLoS One 9:e87235
Tian HG, Peng H, Yao Q, Chen HX, Xie Q, Tang B, Zhang WQ (2009) Developmental control of a lepidopteran pest Spodoptera exigua by ingestion of bacteria expressing dsRNA of a non-midgut gene. PLoS One 4(7):e6225
Tomoyasu Y, Denell RE (2004) Larval RNAi in Tribolium (Coleoptera) for analyzing adult development. Dev Genes Evol 214:575–578
Van der Zee M, Berns N, Roth S (2005) Distinct functions of the Tribolium zerknullt genes in serosa specification and dorsal closure. Curr Biol 15:624–636
Wan PJ, Guo WY, Yang Y, Lu FG, Lu WP, Li GQ (2014) RNAi suppression of the ryanodine receptor gene results in decreased susceptibility to chlorantraniliprole in Colorado potato beetle, Leptinotarsa decemlineata. J Insect Physiol 63:48–55
Wang J, Zhou XB, Li FH, Bradley PL, Chang SF, Perrimon N, Wong STC (2009) An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling. J Biomed Inform 42:32–40
Whyard S, Singh AD, Wong S (2009) Ingested double-stranded RNAs can act as species-specific insecticides. Insect Biochem Mol Biol 39:824–832
Wilson TG, Ashok M (1998) Insecticide resistance resulting from an absence of target-site gene product. Proc Natl Acad Sci U S A 95:14040–14044
Wilson TG, Fabian J (1986) A Drosophila melanogaster mutant resistant to a chemical analog of juvenile hormone. Dev Biol 118:190–201
Worby CA, Simonson-Leff N, Dixon JE (2001) RNA interference of gene expression (RNAi) in cultured Drosophila cells. Sci STKE 2001(95):pl1
Wynant N, Verlinden H, Breugelmans B, Simonet G, Vanden Broeck J (2012) Tissue-dependence and sensitivity of the systemic RNA interference response in the desert locust, Schistocerca gregaria. Insect Biochem Mol Biol 42:911–917
Wynant N, Santos D, Verdonck R, Spit J, Van Wielendaele P, Vanden Broeck J (2014) Identification, functional characterization and phylogenetic analysis of double stranded RNA degrading enzymes present in the gut of the desert locust, Schistocerca gregaria. Insect Biochem Mol Biol 46:1–8
Xiong YH, Zeng HM, Zhang YL, Xu DW, Qiu DW (2013) Silencing the HaHR3 gene by transgenic plant-mediated RNAi to disrupt Helicoverpa armigera development. Int J Biol Sci 9:370–381
Xu J, Tan A, Palli SR (2010) The function of nuclear receptors in regulation of female reproduction and embryogenesis in the red flour beetle, Tribolium castaneum. J Insect Physiol 56:1471–1480
Xu J, Raman C, Zhu F, Tan A, Palli SR (2012) Identification of nuclear receptors involved in regulation of male reproduction in the red flour beetle, Tribolium castaneum. J Insect Physiol 58:710–717
Xu J, Sheng Z, Palli SR (2013) Juvenile hormone and insulin regulate trehalose homeostasis in the red flour beetle, Tribolium castaneum. PLoS Genet 9:e1003535
Zha WJ, Peng XX, Chen RZ, Du B, Zhu LL, He GC (2011) Knockdown of midgut genes by dsRNA-transgenic plant-mediated RNA interference in the hemipteran insect Nilaparvata lugens. PLoS One 6(5):e20504
Zhang Z, Xu J, Sheng Z, Sui Y, Palli SR (2011) Steroid receptor co-activator is required for juvenile hormone signal transduction through a bHLH-PAS transcription factor, methoprene tolerant. J Biol Chem 286:8437–8447
Zhou LT, Jia S, Wan PJ, Kong Y, Guo WC, Ahmat T, Li GQ (2013) RNA interference of a putative S-adenosyl-L-homocysteine hydrolase gene affects larval performance in Leptinotarsa decemlineata (Say). J Insect Physiol 59:1049–1056
Zhu F, Parthasarathy R, Bai H, Woithe K, Kaussmann M, Nauen R, Harrison DA, Palli SR (2010a) A brain-specific cytochrome P450 responsible for the majority of deltamethrin resistance in the QTC279 strain of Tribolium castaneum. Proc Natl Acad Sci U S A 107:8557–8562
Zhu F, Xu JJ, Palli R, Ferguson J, Palli SR (2010b) Ingested RNA interference for managing the populations of the Colorado potato beetle, Leptinotarsa decemlineata. Pest Manag Sci 67:175–182
Zhu F, Sams S, Moural T, Haynes KF, Potter MF, Palli SR (2012a) RNA interference of NADPH-cytochrome P450 reductase results in reduced insecticide resistance in the bed bug, Cimex lectularius. PLoS One 7:e31037
Zhu JQ, Liu S, Ma Y, Zhang JQ, Qi HS, Wei ZJ, Yao Q, Zhang WQ, Li S (2012b) Improvement of pest resistance in transgenic tobacco plants expressing dsRNA of an insect-associated gene EcR. PLoS One 7:e38572
Zhu F, Gujar H, Gordon JR, Haynes KF, Potter MF, Palli SR (2013) Bed bugs evolved unique adaptive strategy to resist pyrethroid insecticides. Sci Rep 3:1456
Acknowledgments
The research in Palli laboratory was supported by the National Science Foundation (IBN 0421856), the National Institutes of Health (GM070559-07), and the National Research Initiative of the USDA-NIFA (2011-67013-30143). This report is contribution number 15-08-075 from the Kentucky Agricultural Experimental Station.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer Science+Business Media Singapore
About this chapter
Cite this chapter
Palli, S.R. (2016). RNA Interference: History, Mechanisms, and Applications in Pest Management. In: Chakravarthy, A., Sridhara, S. (eds) Arthropod Diversity and Conservation in the Tropics and Sub-tropics. Springer, Singapore. https://doi.org/10.1007/978-981-10-1518-2_25
Download citation
DOI: https://doi.org/10.1007/978-981-10-1518-2_25
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-10-1517-5
Online ISBN: 978-981-10-1518-2
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)