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Laboratory Medicine and Biorepositories

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Pediatric Biomedical Informatics

Abstract

Biorepositories provide access to specimens for biomarker investigation of subjects with or without a given condition or clinical outcome. They must record collection, transport, processing, and storage information to ensure that specimens are fit-for-use once a particular analyte has been identified as a candidate biomarker. Ongoing (post-collection) clinical and outcome documentation provides more value to researchers than a static, clinical snapshot at the time of collection. Frequently, biorepository specimens are residua from those obtained for clinical management of a patient; whether routine clinical processing is acceptable, given the stability profile for a given analyte, will dictate whether non-standard processing will be required. Introducing nonstandard steps into clinical lab processing in order to preserve an analyte such as RNA or protein requires careful workflow planning. Accreditation for biorepositories is now available; standards have been developed to ensure that biorepository personnel, equipment, laboratory space, information systems, and policies/procedures, including those for quality management, meet the same high standards by which clinical laboratories are judged and accredited. An additional accreditation standard relates to the development of, and adherence to, policies surrounding informed consent. The current regulatory landscape for pediatric specimen research requires consideration of many issues around informed consent, assent, and reconsent at the age of majority for the collection and use of identifiable specimens for research. Consideration of these requirements based on the current (and evolving) regulatory landscape can be difficult, in light of pending legislative and regulatory changes. Issues surrounding return of incidental findings is another challenge for institutional review boards.

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References

  • American Academy of Pediatrics Committee on Bioethics. Committee on Genetics, and American College of Medical Genetics, and Genomics Social, Ethical, and Legal Issues Committee: ethical and policy issues in genetic testing and screening of children. Pediatrics. 2013;131(3):620–2.

    Article  Google Scholar 

  • Avard D, Sénécal K, Madadi P, Sinnett D. Pediatric research and the return of individual research results. J Law Med Ethics. 2011;39(4):593–604.

    Article  PubMed  Google Scholar 

  • Betsou F, Gunter E, Clements J, DeSouza Y, Goddard KA, Guadagni F, Yan W, Skubitz A, Somiari S, Yeadon T, Chuaqui R. Identification of evidence-based biospecimen quality-control tools: a report of the International Society for Biological and Environmental Repositories (ISBER) Biospecimen Science Working Group. J Mol Diagn. 2013;15(1):3–16.

    Article  CAS  PubMed  Google Scholar 

  • Black L, McClellan KA. Familial communication of research results: a need to know? J Law Med Ethics. 2011;39(4):605–13.

    Article  PubMed  Google Scholar 

  • Bookman EB, Langehorne AA, Eckfeldt JH, Glass KC, Jarvik GP, Klag M, Koski G, Motulsky A, Wilfond B, Manolio TA, Fabsitz RR, Luepker RV. Reporting genetic results in research studies: summary and recommendations of an NHLBI working group. Am J Med Genet A. 2006;140(10):1033–40.

    Article  PubMed  PubMed Central  Google Scholar 

  • Boutin N, Holzbach A, Mahanta L, Aldama J, Cerretani X, Embree K, Leon I, Rathi N, Vickers M. The information technology infrastructure for the translational genomics core and the partners biobank at partners personalized medicine. J Pers Med. 2016;6(1):6.

    Article  PubMed Central  Google Scholar 

  • Brothers KB, Lynch JA, Aufox SA, Connolly JJ, Gelb BD, Holm IA, Sanderson SC, McCormick JB, Williams JL, Wolf WA, Antommaria AH, Clayton EW. Practical guidance on informed consent for pediatric participants in a biorepository. Mayo Clin Proc. 2014;89(11):1471–80.

    Article  PubMed  PubMed Central  Google Scholar 

  • Brothers KB, Holm IA, Childerhose JE, Antommaria AH, Bernhardt BA, Clayton EW, Gelb BD, Joffe S, Lynch JA, McCormick JB, McCullough LB, Parsons DW, Sundaresan AS, Wolf WA, Yu JH, Wilfond BS, Pediatrics Workgroup of the Clinical Sequencing Exploratory Research (CSER) Consortium. When participants in genomic research grow up: contact and consent at the age of majority. J Pediatr. 2016;168:226–31.

    Article  PubMed  Google Scholar 

  • Cadigan RJ, Nelson DK, Henderson GE, Nelson AG, Davis AM. Public comments on proposed regulatory reforms that would impact biospecimen research: the good, the bad, and the puzzling. IRB. 2015;37(5):1–10.

    PubMed  Google Scholar 

  • Choi HJ, Lee MJ, Choi CM, Lee J, Shin SY, Lyu Y, Park YR, Yoo S. Establishing the role of honest broker: bridging the gap between protecting personal health data and clinical research efficiency. Peer J. 2015;3:e1506.

    Article  PubMed  PubMed Central  Google Scholar 

  • Clayton EW. Informed consent and biobanks. J Law Med Ethics. 2005;33(1):15–21.

    Article  PubMed  Google Scholar 

  • College of American Pathologists: Biorepository Checklist. 2015; [http://cap.org]

  • Ellervik C, Vaught J. Preanalytical variables affecting the integrity of human biospecimens in biobanking. Clin Chem. 2015;61(7):914–34.

    Article  CAS  PubMed  Google Scholar 

  • Fernandez CV, Kodish E, Weijer C. Informing study participants of research results: an ethical imperative. IRB. 2003;25(3):12–9.

    Article  PubMed  Google Scholar 

  • Green RC, Berg JS, Grody WW, Kalia SS, Korf BR, Martin CL, McGuire AL, Nussbaum RL, O’Daniel JM, Ormond KE, Rehm HL, Watson MS, Williams MS, Biesecker LG. ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. Genet Med. 2013;15(7):565–74.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jarvik GP, Amendola LM, Berg JS, Brothers K, Clayton EW, Chung W, Evans BJ, Evans JP, Fullerton SM, Gallego CJ, Garrison NA, Gray SW, Holm IA, Kullo IJ, Lehmann LS, McCarty C, Prows CA, Rehm HL, Sharp RR, Salama J, Sanderson S, Van Driest SL, Williams MS, Wolf SM, Wolf WA, eMERGE Act-ROR Committee and CERC committee; CSER Act-ROR Working Group, Burke W. Return of genomic results to research participants: the floor, the ceiling, and the choices in between. Am J Hum Genet. 2014;94(6):818–26.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kohane IS, Mandl KD, Taylor PL, Holm IA, Nigrin DJ, Kunkel LM. Reestablishing the researcher-patient compact. Science. 2007;316(5826):836–7.

    Article  CAS  PubMed  Google Scholar 

  • McCullough LB, Brothers KB, Chung WK, Joffe S, Koenig BA, Wilfond B, Yu JH. Professionally responsible disclosure of genomic sequencing results in pediatric practice. Pediatrics. 2015;136(4):e974–82.

    Article  PubMed  PubMed Central  Google Scholar 

  • McIntosh LD, Sharma MK, Mulvihill D, Gupta S, Juehne A, George B, Khot SB, Kaushal A, Watson MA, Nagarajan R. caTissue Suite to OpenSpecimen: developing an extensible, open source, web-based biobanking management system. J Biomed Inform. 2015;57:456–64.

    Article  PubMed  PubMed Central  Google Scholar 

  • Miller FA, Christensen R, Giacomini M, Robert JS. Duty to disclose what? Querying the putative obligation to return research results to participants. J Med Ethics. 2008;34(3):210–3.

    Article  CAS  PubMed  Google Scholar 

  • National Bioethics Advisory Commission: Research involving human biological materials: Ethical issues and policy guidance. 1999; vol. 1: http://bioethics.georgetown.edu/nbac/hbm.pdf.

  • Presidential Commission for the Study of Bioethical Issues. Anticipate and Communicate: Ethical management of incidental and secondary findings in the clinical, research, and direct-to-consumer contexts. Washington, DC. 2013. http://bioethics.gov/sites/default/files/FINALAnticipateCommunicate_PCSBI_0.pdf.

  • Riondino S, Ferroni P, Spila A, Alessandroni J, D’Alessandro R, Formica V, Della-Morte D, Palmirotta R, Nanni U, Roselli M, Guadagni F. Ensuring sample quality for biomarker discovery studies – use of ICT tools to trace biosample life-cycle. Cancer Genomics Proteomics. 2015;12(6):291–9.

    CAS  PubMed  Google Scholar 

  • Shabihkhani M, Lucey GM, Wei B, Mareninov S, Lou JJ, Vinters HV, Singer EJ, Cloughesy TF, Yong WH. The procurement, storage, and quality assurance of frozen blood and tissue biospecimens in pathology, biorepository, and biobank settings. Clin Biochem. 2014;47(4–5):258–66.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shalowitz DI, Miller FG. Disclosing individual results of clinical research: implications of respect for participants. JAMA. 2005;294(6):737–40.

    Article  CAS  PubMed  Google Scholar 

  • Sharp RR. Downsizing genomic medicine: approaching the ethical complexity of whole-genome sequencing by starting small. Genet Med. 2011;13(3):191–4.

    Article  PubMed  Google Scholar 

  • Wolf SM, Lawrenz FP, Nelson CA, Kahn JP, Cho MK, Clayton EW, Fletcher JG, Georgieff MK, Hammerschmidt D, Hudson K, Illes J, Kapur V, Keane MA, Koenig BA, Leroy BS, McFarland EG, Paradise J, Parker LS, Terry SF, Van Ness B, Wilfond BS. Managing incidental findings in human subjects research: analysis and recommendations. J Law Med Ethics. 2008;36(2):219–48.

    Article  PubMed  PubMed Central  Google Scholar 

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Correspondence to Paul E. Steele M.D. .

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Steele, P.E., Lynch, J.A., Corsmo, J.J., Witte, D.P., Harley, J.B., Cobb, B.L. (2016). Laboratory Medicine and Biorepositories. In: Hutton, J. (eds) Pediatric Biomedical Informatics. Translational Bioinformatics, vol 10. Springer, Singapore. https://doi.org/10.1007/978-981-10-1104-7_7

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