Abstract
Comparative analysis of the genomic sequences of multiple hepatitis E virus (HEV) isolates has revealed extensive genomic diversity among them. Recently, a variety of genetically distinct HEV variants have also been isolated and identified from large numbers of animal species, including birds, rabbits, rats, ferrets, bats, cutthroat trout, and camels, among others. Furthermore, it has been reported that recombination in HEV genomes takes place in animals and in human patients. Also, chronic HEV infection in immunocompromised individuals has revealed the presence of viral strains carrying insertions from human genes. This paper reviews the current knowledge on the genomic variability and evolution of HEV.
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Abbreviations
- HEV:
-
Hepatitis E Virus
- Hel:
-
Helicase
- MeT:
-
Methyltransferase
- ORF:
-
Open reading frame
- PCP:
-
Papain-like cysteine protease
- RdRP:
-
RNA-dependent RNA polymerase
- VLPs:
-
Viruslike particles
References
Ahmad I, Holla RP, Jameel S (2011) Molecular virology of hepatitis E virus. Virus Res 161(1):47–58
Batts W, Yun S, Hedrick R, Winton J (2011) A novel member of the family Hepeviridae from cutthroat trout (Oncorhynchus clarkii). Virus Res 158(1–2):116–123
Borkakoti J, Ahmed G, Hussain SA, Rai A, Kar P (2014) Novel molecular alterations in the ORF 2 capsid gene of hepatitis E virus in patients with acute liver failure in North India. Arch Virol 159(12):3391–3394
Cao D, Meng XJ (2012) Molecular biology and replication of hepatitis E virus. Emerg Microbes Infect 1(8):e17
Cordoba L, Huang YW, Opriessnig T, Harral KK, Beach NM, Finkielstein CV (2011) Three amino acid mutations (F51L, T59A, and S390L) in the capsid protein of the hepatitis E virus collectively contribute to virus attenuation. J Virol 85(11):5338–5349
Cossaboom CM, Cordoba L, Dryman BA, Meng XJ (2011) Hepatitis E virus in rabbits, Virginia, USA. Emerg Infect Dis 17(11):2047–2049
Drexler JF, Seelen A, Corman VM, Fumie TA, Cottontail V, Melim ZR (2012) Bats worldwide carry hepatitis E virus-related viruses that form a putative novel genus within the family Hepeviridae. J Virol 86(17):9134–9147
Emerson SU, Zhang M, Meng XJ, Nguyen H, St Claire M, Govindarajan S (2001) Recombinant hepatitis E virus genomes infectious for primates: importance of capping and discovery of a cis-reactive element. Proc Natl Acad Sci U S A 98(26):15270–15275
Graff J, Nguyen H, Yu C, Elkins WR, St Claire M, Purcell RH (2005) The open reading frame 3 gene of hepatitis E virus contains a cis-reactive element and encodes a protein required for infection of macaques. J Virol 79(11):6680–6689
Gu Y, Tang X, Zhang X, Song C, Zheng M, Wang K (2015) Structural basis for the neutralization of hepatitis E virus by a cross-genotype antibody. Cell Res 25(5):604–620
Haqshenas G, Shivaprasad HL, Woolcock PR, Read DH, Meng XJ (2001) Genetic identification and characterization of a novel virus related to human hepatitis E virus from chickens with hepatitis-splenomegaly syndrome in the United States. J Gen Virol 82(Pt 10):2449–2462
Herremans M, Bakker J, Duizer E, Vennema H, Koopmans MP (2007) Use of serological assays for diagnosis of hepatitis E virus genotype 1 and 3 infections in a setting of low endemicity. Clin Vaccine Immunol 14(5):562–568
Hoofnagle JH, Nelson KE, Purcell RH (2012) Hepatitis E. N Engl J Med 367(13):1237–1244
Huang CC, Nguyen D, Fernandez J, Yun KY, Fry KE, Bradley DW (1992) Molecular cloning and sequencing of the Mexico isolate of hepatitis E virus (HEV). Virology 191(2):550–558
Huang FF, Sun ZF, Emerson SU, Purcell RH, Shivaprasad HL, Pierson FW (2004) Determination and analysis of the complete genomic sequence of avian hepatitis E virus (avian HEV) and attempts to infect rhesus monkeys with avian HEV. J Gen Virol 85(Pt 6):1609–1618
Inoue J, Takahashi M, Mizuo H, Suzuki K, Aikawa T, Shimosegawa T (2009) Nucleotide substitutions of hepatitis E virus genomes associated with fulminant hepatitis and disease severity. Tohoku J Exp Med 218(4):279–284
Izopet J, Dubois M, Bertagnoli S, Lhomme S, Marchandeau S, Boucher S (2012) Hepatitis E virus strains in rabbits and evidence of a closely related strain in humans, France. Emerg Infect Dis 18(8):1274–1281
Jirintai S, Jinshan, Tanggis, Manglai D, Mulyanto, Takahashi M (2012) Molecular analysis of hepatitis E virus from farm rabbits in Inner Mongolia, China and its successful propagation in A549 and PLC/PRF/5 cells. Virus Res 170(1–2):126–137
Johne R, Heckel G, Plenge-Bonig A, Kindler E, Maresch C, Reetz J (2010) Novel hepatitis E virus genotype in Norway rats, Germany. Emerg Infect Dis 16(9):1452–1455
Kamar N, Izopet J, Cintas P, Garrouste C, Uro-Coste E, Cointault O (2010) Hepatitis E virus-induced neurological symptoms in a kidney-transplant patient with chronic hepatitis. Am J Transplant 10(5):1321–1324
Kamar N, Bendall R, Legrand-Abravanel F, Xia NS, Ijaz S, Izopet J (2012) Hepatitis E. Lancet 379(9835):2477–2488
Kar-Roy A, Korkaya H, Oberoi R, Lal SK, Jameel S (2004) The hepatitis E virus open reading frame 3 protein activates ERK through binding and inhibition of the MAPK phosphatase. J Biol Chem 279(27):28345–28357
Khudyakov Y, Khudyakova NS, Jue DL, Wells TW, Padhya N, Fields HA (1994) Comparative characterization of antigenic epitopes in the immunodominant region of the protein encoded by open reading frame 3 in Burmese and Mexican strains of hepatitis E virus. J Gen Virol 75(Pt 3):641–646
Khudyakov YE, Khudyakova NS, Fields HA, Jue D, Starling C, Favorov MO (1993) Epitope mapping in proteins of hepatitis E virus. Virology 194(1):89–96
Korkaya H, Jameel S, Gupta D, Tyagi S, Kumar R, Zafrullah M (2001) The ORF3 protein of hepatitis E virus binds to Src homology 3 domains and activates MAPK. J Biol Chem 276(45):42389–42400
Lhomme S, Garrouste C, Kamar N, Saune K, Abravanel F, Mansuy JM (2014) Influence of polyproline region and macro domain genetic heterogeneity on HEV persistence in immunocompromised patients. J Infect Dis 209(2):300–303
Li F, Zhuang H, Kolivas S, Locarnini SA, Anderson DA (1994) Persistent and transient antibody responses to hepatitis E virus detected by western immunoblot using open reading frame 2 and 3 and glutathione S-transferase fusion proteins. J Clin Microbiol 32(9):2060–2066
Li SW, Zhang J, He ZQ, Gu Y, Liu RS, Lin J (2005) Mutational analysis of essential interactions involved in the assembly of hepatitis E virus capsid. J Biol Chem 280(5):3400–3406
Lu L, Li C, Hagedorn CH (2006) Phylogenetic analysis of global hepatitis E virus sequences: genetic diversity, subtypes and zoonosis. Rev Med Virol 16(1):5–36
Ma H, Song X, Harrison TJ, Li R, Huang G, Zhang H (2009) Immunogenicity and efficacy of a bacterially expressed HEV ORF3 peptide, assessed by experimental infection of primates. Arch Virol 154(10):1641–1648
Ma H, Song X, Li Z, Harrison TJ, Zhang H, Huang W (2009) Varying abilities of recombinant polypeptides from different regions of hepatitis E virus ORF2 and ORF3 to detect anti-HEV immunoglobulin M. J Med Virol 81(6):1052–1061
Ma H, Song X, Harrison TJ, Zhang H, Huang W, Wang Y (2011) Hepatitis E virus ORF3 antigens derived from genotype 1 and 4 viruses are detected with varying efficiencies by an anti-HEV enzyme immunoassay. J Med Virol 83(5):827–832
Meng J, Dai X, Chang JC, Lopareva E, Pillot J, Fields HA (2001) Identification and characterization of the neutralization epitope(s) of the hepatitis E virus. Virology 288(2):203–211
Meng XJ, Purcell RH, Halbur PG, Lehman JR, Webb DM, Tsareva TS (1997) A novel virus in swine is closely related to the human hepatitis E virus. Proc Natl Acad Sci U S A 94(18):9860–9865
Nguyen HT, Torian U, Faulk K, Mather K, Engle RE, Thompson E (2012) A naturally occurring human/hepatitis E recombinant virus predominates in serum but not in faeces of a chronic hepatitis E patient and has a growth advantage in cell culture. J Gen Virol 93(Pt 3):526–530
Panda SK, Nanda SK, Zafrullah M, Ansari IH, Ozdener MH, Jameel S (1995) An Indian strain of hepatitis E virus (HEV): cloning, sequence, and expression of structural region and antibody responses in sera from individuals from an area of high-level HEV endemicity. J Clin Microbiol 33(10):2653–2659
Panda SK, Ansari IH, Durgapal H, Agrawal S, Jameel S (2000) The in vitro-synthesized RNA from a cDNA clone of hepatitis E virus is infectious. J Virol 74(5):2430–2437
Panda SK, Varma SP (2013) Hepatitis E: molecular virology and pathogenesis. J Clin Exp Hepatol 3(2):114–124
Parvez MK, Purcell RH, Emerson SU (2011) Hepatitis E virus ORF2 protein over-expressed by baculovirus in hepatoma cells, efficiently encapsidates and transmits the viral RNA to naive cells. Virol J 8:159
Pudupakam RS, Huang YW, Opriessnig T, Halbur PG, Pierson FW, Meng XJ (2009) Deletions of the hypervariable region (HVR) in open reading frame 1 of hepatitis E virus do not abolish virus infectivity: evidence for attenuation of HVR deletion mutants in vivo. J Virol 83(1):384–395
Pudupakam RS, Kenney SP, Cordoba L, Huang YW, Dryman BA, Leroith T (2011) Mutational analysis of the hypervariable region of hepatitis E virus reveals its involvement in the efficiency of viral RNA replication. J Virol 85(19):10031–10040
Purdy MA, Lara J, Khudyakov YE (2012) The hepatitis E virus polyproline region is involved in viral adaptation. PLoS One 7(4):e35974
Raj VS, Smits SL, Pas SD, Provacia LB, Moorman-Roest H, Osterhaus AD (2012) Novel hepatitis E virus in ferrets, the Netherlands. Emerg Infect Dis 18(8):1369–1370
Ratra R, Kar-Roy A, Lal SK (2008) The ORF3 protein of hepatitis E virus interacts with hemopexin by means of its 26 amino acid N-terminal hydrophobic domain II. Biochemistry 47(7):1957–1969
Schofield DJ, Glamann J, Emerson SU, Purcell RH (2000) Identification by phage display and characterization of two neutralizing chimpanzee monoclonal antibodies to the hepatitis E virus capsid protein. J Virol 74(12):5548–5555
Shukla P, Nguyen HT, Torian U, Engle RE, Faulk K, Dalton HR (2011) Cross-species infections of cultured cells by hepatitis E virus and discovery of an infectious virus-host recombinant. Proc Natl Acad Sci U S A 108(6):2438–2443
Smith DB, Vanek J, Ramalingam S, Johannessen I, Templeton K, Simmonds P (2012) Evolution of the hepatitis E virus hypervariable region. J Gen Virol 93(Pt 11):2408–2418
Smith DB, Simmonds P, Jameel S, Emerson SU, Harrison TJ, Meng XJ (2014) Consensus proposals for classification of the family Hepeviridae. J Gen Virol 95(Pt 10):2223–2232
Taherkhani R, Farshadpour F, Makvandi M, Rajabi MH, Samarbafzadeh AR, Sharifi N (2015) Cytokine profiles and cell proliferation responses to Truncated ORF2 protein in Iranian patients recovered from hepatitis E infection. J Trop Med 2015:523560
Takahashi M, Tanaka T, Takahashi H, Hoshino Y, Nagashima S, Jirintai (2010) Hepatitis E Virus (HEV) strains in serum samples can replicate efficiently in cultured cells despite the coexistence of HEV antibodies: characterization of HEV virions in blood circulation. J Clin Microbiol 48(4):1112–1125
Tsarev SA, Emerson SU, Reyes GR, Tsareva TS, Legters LJ, Malik IA (1992) Characterization of a prototype strain of hepatitis E virus. Proc Natl Acad Sci U S A 89(2):559–563
Tyagi S, Korkaya H, Zafrullah M, Jameel S, Lal SK (2002) The phosphorylated form of the ORF3 protein of hepatitis E virus interacts with its non-glycosylated form of the major capsid protein, ORF2. J Biol Chem 277(25):22759–22767
Wang H, Zhang W, Ni B, Shen H, Song Y, Wang X (2010) Recombination analysis reveals a double recombination event in hepatitis E virus. Virol J 7:129
Wang H, Ji F, Liang H, Gu H, Ning Z, Liu R (2015) A Proline-rich domain in the genotype 4 hepatitis E virus ORF3 C-terminus is crucial for downstream V105DLP108 immunoactivity. PLoS One 10(7):e0133282
Wang Y, Zhang H, Li Z, Gu W, Lan H, Hao W (2001) Detection of sporadic cases of hepatitis E virus (HEV) infection in China using immunoassays based on recombinant open reading frame 2 and 3 polypeptides from HEV genotype 4. J Clin Microbiol 39(12):4370–4379
Wen J, Behloul N, Dai X, Dong C, Liang J, Zhang M (2016) Immunogenicity difference between two hepatitis E vaccines derived from genotype 1 and 4. Antiviral Res 128:36–42
Xing L, Wang JC, Li TC, Yasutomi Y, Lara J, Khudyakov Y (2011) Spatial configuration of hepatitis E virus antigenic domain. J Virol 85(2):1117–1124
Xu M, Behloul N, Wen J, Zhang J, Meng J (2016) Role of asparagine at position 562 in dimerization and immunogenicity of the hepatitis E virus capsid protein. Infect Genet Evol 37:99–107
Yamashita T, Mori Y, Miyazaki N, Cheng RH, Yoshimura M, Unno H (2009) Biological and immunological characteristics of hepatitis E virus-like particles based on the crystal structure. Proc Natl Acad Sci U S A 106(31):12986–12991
Yang D, Jiang M, Jin M, Qiu Z, Cui W, Shen Z (2013) Full-length sequence analysis of hepatitis E virus isolates: showing potential determinants of virus genotype and identity. Virus Genes 47(3):414–421
Yarbough PO, Tam AW, Fry KE, Krawczynski K, McCaustland KA, Bradley DW (1991) Hepatitis E virus: identification of type-common epitopes. J Virol 65(11):5790–5797
Zafrullah M, Ozdener MH, Panda SK, Jameel S (1997) The ORF3 protein of hepatitis E virus is a phosphoprotein that associates with the cytoskeleton. J Virol 71(12):9045–9053
Zhang H, Dai X, Shan X, Meng J (2008) The Leu477 and Leu613 of ORF2-encoded protein are critical in forming neutralization antigenic epitope of hepatitis E virus genotype 4. Cell Mol Immunol 5(6):447–456
Zhao C, Ma Z, Harrison TJ, Feng R, Zhang C, Qiao Z (2009) A novel genotype of hepatitis E virus prevalent among farmed rabbits in China. J Med Virol 81(8):1371–1379
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Zhang, Y., Gong, W., Zeng, H., Wang, L. (2016). Genetic Evolution of Hepatitis E Virus. In: Wang, Y. (eds) Hepatitis E Virus. Advances in Experimental Medicine and Biology, vol 948. Springer, Dordrecht. https://doi.org/10.1007/978-94-024-0942-0_5
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