Skip to main content

Urinary Proteins with Post-translational Modifications

  • Chapter
  • First Online:
Urine Proteomics in Kidney Disease Biomarker Discovery

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 845))

Abstract

Research on the human urine proteome may lay the foundation for the discovery of relevant disease biomarkers. Posttranslational modifications (PTMs) have important effects on the functions of protein biomarkers. Identifying PTMs without enrichment adds no extra steps to conventional identification procedures for urine proteomics. The only difference is that this method requires software that can conduct unrestrictive identifications of PTMs. These PTMs include methylation, dehydration, oxidation, hydroxylation, phosphorylation, or dihydroxylation. These data are useful reference for PTM biomarker discovery in the future.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Rossing K, Mischak H, Rossing P et al (2008) The urinary proteome in diabetes and diabetes-associated complications: new ways to assess disease progression and evaluate therapy. Proteomics Clin Appl 2:997–1007

    Google Scholar 

  2. Ahmed N, Hornalley PJT, Adidi RJ et al (2005) Glycated and oxidized protein degradation products are indicators of fasting and postprandial hyperglycemia in diabetes. Diabetes Care 28:2465–2471

    Google Scholar 

  3. Vivekanandan Giri A, Slocum JL, Buller CL et al (2011) Urine glycoprotein profile reveals novel Markers for chronic kidney disease. Int J Proteomics, 214715

    Google Scholar 

  4. Christensen B, Petersen TE, Sørensen ES (2008) Posttranslational modification and proteolytic processing of urinary osteopontin. Biochem Soc 411:53–61

    Google Scholar 

  5. Ye B, Skates S, Mok SC et al (2006) Proteomic-based discovery and characterization of glycosylated eosinophil-derived neurotoxin and COOH-terminal osteopontin fragments for ovarian cancer in urine. Clin Cancer Res 12:432–441

    Google Scholar 

  6. Thongboonkerd V, Arthur JM, Klein JB (2002) Proteomic analysis of normal human urinary proteins isolated by acetone precipitation or ultracentrifugation. Kidney Int 62:1461–1469

    Google Scholar 

  7. Kiernan UA, Tubbs KA, Nedelkov D et al (2003) Comparative urine protein phenotyping using mass spectrometric immunoassay. J Proteome Res 2:191–197

    Google Scholar 

  8. Wang L, Li F, Sun W et al (2006) Concanavalin A-captured glycoproteins in healthy human urine. Mol Cell Proteomics 5:560–562

    Google Scholar 

  9. Moon PG, Hwang HH, Boo YC et al (2008) Proteomics and 2-DE identification of rat urinary glycoproteome captured by three lectins using gel and LC-based proteomics. Electrophoresis 29:4324–4331

    Google Scholar 

  10. Halim A, Nilsson J, Rüetschi U et al (2012) Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD. Mol Cell Proteomics 11:M111.013649

    Google Scholar 

  11. Zhao Y, Jensen ON (2009) Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques. Proteomics 9:4632–4641

    Google Scholar 

  12. Li QR, Fan KX, Li RX et al (2010) A comprehensive and non-prefractionation on the protein level approach for the human urinary proteome: touching phosphorylation in urine. Rapid Commun Mass Spectrom 24:823–832

    Google Scholar 

  13. Na S, Bandeira N, Paek E (2012) Fast multi-blind modification search through tandem mass spectrometry. Mol Cell Proteomics 11:M111.010199

    Google Scholar 

  14. Han X, He L, Xi L et al (2011) PeaksPTM: mass spectrometry-based identification of peptides with unspecified modifications. J Proteome Res 10:2930–2936

    Google Scholar 

  15. Liu L, Liu X, Sun W et al (2013) Unrestrictive identification of post-translational modifications in the urine proteome without enrichment. Proteome Science 11:1

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Liu Liu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Liu, L., Liu, X. (2015). Urinary Proteins with Post-translational Modifications. In: Gao, Y. (eds) Urine Proteomics in Kidney Disease Biomarker Discovery. Advances in Experimental Medicine and Biology, vol 845. Springer, Dordrecht. https://doi.org/10.1007/978-94-017-9523-4_6

Download citation

Publish with us

Policies and ethics