Abstract
Measurement of free zinc levels and imaging of zinc fluxes remains technically difficult due to low levels and the presence of interfering cations such as Mg and Ca. We have developed a series of fluorescent zinc indicators based on the superb sensitivity and selectivity of a protein, human apo-carbonic anhydrase II, for Zn(II). These indicators transduce the level of free zinc as changes in intensity, wavelength ratio, lifetime, and/or anisotropy; the latter three approaches permit quantitative imaging of zinc levels in the microscope. A unique attribute of sensors incorporating biological macromolecules as transducers is their capability for modification by site-directed mutagenesis. Thus we have produced variants of carbonic anhydrase with improved affinity for zinc, altered selectivity, and enhanced binding kinetics, all of which are difficult to modify in small molecule indicators.
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References
Alberts IL, Nadassy K. 1998 Analysis of zinc binding sites in protein crystal structures. Protein Sci 7, 1700–1716.
Belli SL, Zirino A. 1993 Behavior and calibration of the copper(II) ion-selective electrode in high chloride media and marine waters. Anal Chem 65, 2583–2589.
Benters A, Flogel U, Schafer T, Leibfritz D, Hechtenberg S, Beyers-mann D. 1997 Study of the interactions of cadmium and zinc ions with cellular calcium homeostasis using 19F-NMR spectroscopy. Biochem J 322, 793–799.
Chen RF, Kernohan J. 1967 Combination of bovine carbonic anhydrase with a fluorescent sulfonamide. J Biol Chem 242, 5813–5823.
Christianson DW. 1991 Structural biology of zinc. Adv Prot Chem 42, 281–355.
Christianson DW, Alexander RS. 1989 Carboxylate histidine zinc interactions in protein — structure and function. J Am Chem Soc 111, 6412–6419.
Christianson DW, Fierke CA. 1996 Carbonic anhydrase — Evolution of the zinc binding site by nature and by design. Acc Chem Res 29, 331–339.
Clark HA, Hoyer M, Philbert MA, Kopelman R. 1999 Optical nanosensors for chemical analysis inside single living cells. I. Fabrication, characterization, and methods for intracellular delivery of PEBBLE sensors. Anal Chem 71, 4831–4836.
Cox JD, Hunt JA, Compher KM, Fierke CA, Christianson DW. 2000 Structural influence of hydrophobic core residues on metal binding and specificity in carbonic anhydrase II. Biochemistry 39, 13687–13694.
Denny MF, Atchison WD. 1994 Methylmercury-induced elevations in intrasynaptosomal zinc concentrations: an 19F-NMR study. J Neurochem 63, 383–386.
DiTusa CA, McCall KA, Christensen T, Mahapatro M, Fierke CA, Toone EJ. 2001 Thermodynamics of metal ion binding. Il. Metal ion binding by carbonic anhydrase variants. Biochemistry, 40, 5345–5351.
Dix JA, Verkman AS. 1990 Mapping of fluorescence anisotropy in living cells by ratio imaging: Application to cytoplasmic viscosity. Biophvs J 57, 231–240.
Eigen M, Hammes GG. 1963 Elementary steps in enzyme reactions as studied by relaxation spectrometry. Adv Enzymol Relat Areas Mol Biol 25, 1–38.
Elbaum D, Nair SK, Patchan MW, Thompson RB, Christianson DW. 1996 Structure-based design of a sulfonamide probe for fluorescence anisotropy detection of zinc with a carbonic anhydrase-based biosensor. J Am Chem Soc 118, 8381–8387.
Eriksson AE, Jones TA. 1988 Refined structure of human carbonic anhydrase II at 2.0 A resolution. Proteins 4, 274–282.
Fernandez-Gutierrez A, Munoz de la Pena A. 1985 Determinations of inorganic substances by luminescence methods. In: Schulman S.G. ed. Molecular Luminescence Spectroscopy, Part l: Methods and Applications; New York: Wiley-Interscience, 371–546.
Frederickson CJ, Suh SW, Silva D, Frederickson CJ, Thompson RB. 2000 Importance of zinc in the central nervous system: the zinc-containing neuron. J Nutr (Suppl.) 130, 1471S - 1483S.
Fushimi K, Dix JA, Verkman AS. 1990 Cell membrane fluidity in the intact kidney proximal tubule measured by orientation-independent fluorescence anisotropy imaging. Biophvs J 57, 241–254.
Glusker JP. 1991 Structural aspects of metal liganding. Adv Prot Chem 42, 1–76.
Grynkiewicz G, Poenie M, Tsien RY. 1985 A new generation of calcium indicators with greatly improved fluorescence properties. J Biol Chem 260, 3440–3450.
Hakansson K, Carlsson M, Svensson LA, Liljas A. 1992 Structure of native and apo carbonic anhydrase II and structure of some of its anion-ligand complexes. J Mol Biol 227, 1192–1204.
Hakansson K, Wehnert A, Liljas A. 1994 X-ray analysis of metal-substituted human carbonic anhydrase II derivatives. Acta Crys D50, 93–100.
Haugland RP. 1996 Handbook of Fluorescent Probes and Research Chemicals. Oregon: Molecular Probes, Inc., Eugene.
Henkens RW, Sturtevant JM. 1968 The kinetics of the binding of Zn(II) by apocarbonic anhydrase. J Am Chem Soc 90, 2669–2676.
Hirano T, Kikuchi K, Urano Y, Higuchi T, Nagano T. 2000 Highly zinc-selective fluorescent sensor molecules suitable for biological applications. J Am Chem Soc 122, 12399–12400.
Huang C-C, Lesburg CA, Kiefer LL, Fierke CA, Christianson DW. 1996 Reversal of the hydrogen bond to zinc ligand histidine-119 dramatically diminishes catalysis and enhances metal equilibration kinetics in carbonic anhydrase II. Biochemistry 35, 3439–3446.
Hunt JA, Ahmed M, Fierke CA. 1999 Metal binding specificity in carbonic anhydrase is influenced by conserved hydrophobic amino acids. Biochemistry 38, 9054–9060.
Hunt JA, Fierke CA. 1997 Selection of carbonic anhydrase variants displayed on phage: aromatic residues in zinc binding site enhance metal affinity and equilibration kinetics. J Biol Chem 272, 20364–20372.
Ippolito JA, Baird TT, McGee SA, Christianson DW, Fierke CA. 1995a Structure-assisted redesign of a protein-zinc binding site with femtomolar affinity. Proc Natl Acad Sci USA 92, 50175021.
Ippolito JA, Christianson DW. 1993 Structure of a His3Cys zinc binding site in human carbonic anhydrase II. Biochemistry 32, 9901–9905.
Ippolito JA, Christianson DW. 1994 Structural consequences of redesigning a protein-zinc binding site. Biochemistry 33, 1524115249.
Ippolito JA, Nair SK, Fierke CA, Christianson DW. 1995b Structure of His94Asp carbonic anhydrase II in a new crystalline form reveals a partially occupied zinc binding site. Prot Engin 8, 975–980.
Iverson TM, Alber BE, Kisker C, Ferry JG, Rees DC. 2000 A closer look at gamma-class carbonic anhydrases: high resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila. Biochemistry 39, 9222–9231.
Jensen KK, Martini L, Schwartz TW. 2001 Enhanced fluorescence resonance energy transfer between spectral variants of green fluorescent protein through zinc-site engineering. Biochemistry 40, 938–945.
Kiefer LL, Fierke CA. 1994 Functional characterization of human carbonic anhydrase II variants with altered zinc binding sites. Biochemistry 33, 15233–15240.
Kiefer LL, Ippolito JA, Fierke CA, Christianson DW. 1993a Redesigning the zinc binding site of human carbonic anhydrase II: Structure of a His2Asp-Zn2+ metal coordination polyhedron. J Am Chem Soc 115, 12581–12582.
Kiefer LL, Krebs JF, Fierke CA. 19936 Engineering a cysteine residue into the zinc binding site of carbonic anhydrase II. Biochemistry 32, 9896–9900.
Kiefer LL, Paterno SA, Fierke CA. 1995 Hydrogen bond network in the metal binding site of carbonic anhydrase enhances zinc affinity and catalytic efficiency. JAm Chem Soc 117, 6831–6837.
Kimber MS, Pai EF. 2000 The active site architecture of Pisum sativum beta-carbonic anhydrase is a mirror image of that of alpha-carbonic anhydrases. EMBO J 19, 1407–1418.
Kuhn MA, Hoyland B, Carter S, Zhang C, Haugland RE. 1995 Fluorescent ion indicators for detecting heavy metals. SPIE Conference on Adv Fluor Sens Tech ll (San Jose, California), Vol. 2388, 238–244.
Lesburg CA, Christianson DW. 1995 X-ray crystallographic studies of engineered hydrogen bond networks in a protein-zinc binding site. J Am Chem Soc 117, 6838–6844.
Lesburg CA, Huang C-C, Christianson DW, Fierke CA. 1997 Histidine to carboxamide ligand substitutions in the zinc binding site of carbonic anhydrase II alter metal coordination geometry but retain catalytic activity. Biochemistry 36, 15780–15791.
Levy R, Guignon EF,Cobane S, St. Louis E, Fernandez S. 1997 Compact, rugged, and inexpensive frequency domain fluorometer. SPIE Conference on Advances in Fluorescence Sensing Technology III,San Jose, CA vol. 2980, 81–89.
Lindskog S, Henderson LE, Kannan KK, Liljas A, Nyman PO, Strandberg B. 1971 Carbonic anhydrase. In: Boyer PD, ed. The Enzymes. New York: Academic Press: 587–665.
Lindskog S, Nyman PO. 1964 Metal-binding properties of human erythrocyte carbonic anhydrases. Biochim Biophys Acta 85, 462474.
Lippitsch ME, Pusterhofer J, Leiner MJP, Wollbeis OS. 1988 Fiber-optic oxygen sensor with the fluorescence decay time as the information carrier. Anal Chim Acta 205, 1–6.
Maren TH. 1977 Use of inhibitors in physiological studies of carbonic anhydrase. Am J Physiol 232, F291 - F297.
McCall KA, Fierke CA. 2000 Colorimetric and fluorimetric assays to quantitate micromolar concentrations of transition metals. Anal Biochemistry 284, 307–315.
Mitsuhashi S, Mizushima T, Yamashita E, Yamamoto M, Kumasaka T, Moriyama H, Ueki T, Miyachi S, Tsukihara T. 2000 X-ray structure of beta carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO2 hydration. J Biol Chem 275, 5521–5526.
Miyawaki A, Llopis J, Heim R, McCaffery JM, Adams JA, Ikura M, Tsien RY. 1997 Fluorescent indicators for Cat+ based on green fluorescent proteins and calmodulin. Nature 388, 882–887.
Pearce LL, Gandley RE, Han W, Wasserloos K, Stitt M, Kanai AJ, McLaughlin MK, Pitt BR, Levitan ES. 2000 Role of metallothionein in nitric oxide signaling as revealed by a green fluorescent fusion protein. Proc Natl Acad Sci USA 97, 477–482.
Pearson RG. 1966 Acids and bases. Science 151, 172–177.
Rae TD, Schmidt PJ, Pufahl RA, Culotta VC, O’Halloran TV. 1999 Undetectable intracellular free copper: the requirement of a copper chaperone for superoxide dismutase. Science 284, 805–808.
Roe RR, Pang YP. 1999 Zinc’s exclusive tetrahedral coordination governed by its electronic structure. J Mol Model 5, 134–140.
Rulisek L, Vondrasek J. 1998 Coordination geometries of selected transition metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+) in metalloproteins. J lnorg Biochem 71, 115–127.
Simons TJB. 1993 Measurement of free zinc ion concentration with the fluorescent probe mag-fura-2 (furaptra). J Biochem Biophys Meth 27, 25–37.
Szmacinski H, Lakowicz JR. 1993 Optical measurements of pH using fluorescence lifetimes and phase-modulation fluorometry. Anal Chem 65, 1668–1674.
Thompson RB. 1991 Fluorescence-based fiber optic sensors. In: Lakowicz JR, ed. Topics in Fluorescence Spectroscopy. Vol. 2: Principles. New York: Plenum Press: 345–365.
Thompson RB. 1993 Fiber optic ion sensors based on phase fluorescence lifetime measurements. SPIE Conference on Advances in Fluorescence Sensing Technology, Los Angeles, CA, vol. 1885, 290–299.
Thompson RB, Frisoli JK, Lakowicz JR. 1992 Phase fluorometry using a continuously modulated laser diode. Anal Chem 64, 2075–2078.
Thompson RB, Ge Z, Patchan MW, Fierke CA. 1996a Performance enhancement of fluorescence energy transfer-based biosensors by site-directed mutagenesis of the transducer. J Biomed Optics 1, 131–137.
Thompson RB, Ge Z, Patchan MW, Huang C-C, Fierke CA. 1996b Fiber optic biosensor for Co(II) and Cu(II) based on fluorescence energy transfer with an enzyme transducer. Biosensors Bioelectron 11, 557–564.
Thompson RB, Jones ER. 1993 Enzyme-based fiber optic zinc biosensor. Anal Chem 65, 730–734.
Thompson RB, Whetsell WO Jr., Maliwal BP, Fierke CA, Frederickson CJ. 2000a Fluorescence microscopy of stimulated Zn(II) release from organotypic cultures of mammalian hippocampus using a carbonic anhydrase-based biosensor system. J Neurosci Meth 96, 35–45.
Thompson RB, Maliwal BP, Feliccia VL, Fierke CA, McCall K. I 998a Determination of picomolar concentrations of metal ions using fluorescence anisotropy: biosensing with a `reagentless’ enzyme transducer. Anal Chem 70, 4717–4723.
Thompson RB, Maliwal BP, Fierke CA. 1998b Expanded dynamic range of free zinc ion determination by fluorescence anisotropy. Anal Chem 70, 1749–1754.
Thompson RB, Maliwal BP, Fierke CA. 1999 Selectivity and sensitivity of fluorescence lifetime-based metal ion biosensing using a carbonic anhydrase transducer. Anal Biochem 267, 185–195.
Thompson RB, Maliwal BP, Zeng HH. 2000b Zinc biosensing with multiphoton excitation using carbonic anhydrase and improved fluorophores. J Biomed Optics 5, 17–22.
Thompson RB, Patchan MW. 1995a Fluorescence lifetime-based biosensing of zinc: origin of the broad dynamic range. J Fluoresc 5, 123–130.
Thompson RB, Patchan MW. 1995b Lifetime-based fluorescence energy transfer biosensing of zinc. Anal Biochem 227, 123–128
Thompson RB, Walt DR. 1994 Emerging strategies for molecular biosensors. Naval Res Rev 46, 19–29.
Thompson RB, Zeng HH, Loetz M, Fierke C. 2000 Issues in enzyme-based metal ion biosensing in complex media. In-vitro Diagnostic Instrumentation (San Jose, CA), vol. 3913, 120–127
Weber G. 1956 Photoelectric method for the measurement of polar-ization of fluorescence of solutions. J Opt Soc Am 46, 962
White CE, Argauer RJ. 1970 Fluorescence Analysis: A Practical Approach. New York: Marcel Dekker, Inc.
Yamashita MM, Wesson L. 1990 Where metal ions bind in proteins. Proc Natl Acad Sci USA 87, 5648–5652.
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Fierke, C.A., Thompson, R.B. (2001). Fluorescence-based biosensing of zinc using carbonic anhydrase. In: Maret, W. (eds) Zinc Biochemistry, Physiology, and Homeostasis. Springer, Dordrecht. https://doi.org/10.1007/978-94-017-3728-9_2
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DOI: https://doi.org/10.1007/978-94-017-3728-9_2
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