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From Topology to High Resolution Membrane Protein Structures

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Perspectives on Solid State NMR in Biology

Part of the book series: Focus on Structural Biology ((FOSB,volume 1))

Abstract

Structural genomics of membrane proteins represents a particularly exciting challenge for biophysicists. These proteins are heterogeneous, both in themselves because of post translational modifications and in their environment from the heterogeneity of the membrane. Such heterogeneity greatly complicates structural characterization. Furthermore, the scarcity of specific interactions between secondary structural elements in the membrane environment results in increased dynamics and flexibility. Solid state NMR provides a methodology and a range of techniques that can characterize these proteins in a planar lipid bilayer environment [1]. NMR is an inherently high resolution method in that specific atomic sites are directly observed. With solid state NMR this potential for high resolution is fulfilled by obtaining very precise distance and orientational restraints. Until recently however, topology was very difficult to achieve; now several approaches are evolving so that both low resolution topology and unique high resolution structures can be obtained.

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References

  1. Fu, R. and Cross, T.A., Ann. Rev. Biophys. Biomol. Struct. 28 (1999) 235.

    Article  CAS  Google Scholar 

  2. North, C.L. and Cross, T.A., Biochemistry 34 (1995) 5883.

    Article  PubMed  CAS  Google Scholar 

  3. von Heijne, G. EMBO J. 5 (1986) 3021.

    CAS  Google Scholar 

  4. Popot, J.L. and Engelman, D.M., Biochemistry 29 (1990) 4031.

    Article  PubMed  CAS  Google Scholar 

  5. Engelman, D.M. and Steitz, T.A. in The Protein Folding Problem (ed. Wetlaufer, D.B.) Westview, Boulder, Colorado, (1984) 87.

    Google Scholar 

  6. Xu, F. and Cross, T.A., Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 9057.

    Article  CAS  Google Scholar 

  7. Engelman, D.M., Science 274 (1996) 1850.

    Article  PubMed  CAS  Google Scholar 

  8. Arumugam, S., Pascal, S., North, C.L., Hu, W., Lee, K.-C., Cotten, M., Ketchem, R.R., Xu, F., Brenneman, M., Kovacs, F., Tian, F., Wang, A., Huo, S. and Cross, T.A., Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 5872.

    Article  CAS  Google Scholar 

  9. Lamb, R.A., Holsinger, L.J. and Pinto, L.H., In Wemmer, D.E. (ed.) Receptor-Mediated Virus Entry into Cell, Cold Spring Harbor Press: Cold Spring Harbor, New York (1994) p. 303.

    Google Scholar 

  10. Duff, K.C. and Ashley, R.H., Virology 190 (1992) 485.

    Article  PubMed  CAS  Google Scholar 

  11. Cross, T.A., Ketchem, R.R., Hu, W., Lee, K.-C., Lazo, N.D. and North, C.L. Bull. Magn. Reson. 14 (1992) 96.

    CAS  Google Scholar 

  12. Wu, C.H., Ramamoorthy, A. and Opella, S.J., J. Magn. Reson. 109A (1994) 270.

    Article  Google Scholar 

  13. Fields, C.G., Fields, G.B., Nobles, R., Cross, T.A., Int. J. Peptide Protein Res. 33 1989 ) 298.

    Article  CAS  Google Scholar 

  14. Kovacs, F. and Cross, T.A., Biophys. J. 74 (1977) 2511.

    Google Scholar 

  15. FROM TOPOLOGY TO STRUCTURE 69

    Google Scholar 

  16. Song, Z., Kovacs, F.A., Wang, J., Denny, J.K., Shekar, S.C., Quine, J.R. and Cross, T.A., Biophys. J. 79 (2000) 767.

    Article  PubMed  CAS  Google Scholar 

  17. Wang, J., Denny, J., Tian, C., Kim, S., Mo, Y., Kovacs, F., Song, Z., Nishimura, K., Gan, Z., Fu, R., Quine, J.R. & Cross, T.A., J. Magn. Reson. 144 (2000) 162.

    Article  PubMed  CAS  Google Scholar 

  18. Cross, T.A. and Quine, J., Concepts in Magn. Reson. 12 (2000) 55.

    CAS  Google Scholar 

  19. Marassi, F.M. and Opella, S.J., J. Magn. Reson. 144 (2000) 150.

    Article  PubMed  CAS  Google Scholar 

  20. Ketchem, R.R., Hu, W. and Cross, T.A., Science 261 (1993) 1457.

    Article  PubMed  CAS  Google Scholar 

  21. Ketchem, R.R., Roux, B. and Cross, T.A., In Merz, K.M. and Roux, B. (eds.) Membrane Structure and Dynamics, Birkhauser, Boston, MA, (1996) p. 299.

    Google Scholar 

  22. Kovacs, F.A., Denny, J.K., Song, Z., Quine, J.R. and Cross, T.A., J. Mol. Biol. 295 (2000)117.

    Google Scholar 

  23. Kim, S., Quine, J.R. and Cross, T.A., J. Am. Chem. Soc., in press.

    Google Scholar 

  24. Kukol, A., Adams, P.D., Rice, L.M., Brunger, A.T. and Arkin, I.T., J. Mol. Biol. 286 (1999) 951.

    Article  PubMed  CAS  Google Scholar 

  25. Pinto, L.H., Dieckmann, G.R., Gandhi, C.S., Papworth, C.G., Braman, J., Shaughnessy, M.A., Lear, J.D., Lamb, R.A. and DeGrado, W.F., Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 11301.

    Article  CAS  Google Scholar 

  26. Zhong, Q., Husslein, T., Moore, P.B., Newns, D.M., Pattnaik, P. and Klein, M.L., FEBS Letters 434 (1998) 265.

    Article  PubMed  CAS  Google Scholar 

  27. Forrest, L.R., Kukol, A., Arkin, I.T., Tieleman, D.P. and Sansom, M.S.P., Biophys. J. 78 (1999) 55.

    Article  Google Scholar 

  28. Schweighofer, K.J. and Pohorille, A., Biophys. J. 78 (2000) 150.

    Article  PubMed  CAS  Google Scholar 

  29. Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N. and Kouyama, T., Acta Crystallogr. Biol. Crystallogr. D55 (1999) 1251.

    Google Scholar 

  30. Pebay-Peyroula, E., Rummel, G., Rosenbusch, J.P. and Landau, E.M., Science 277 (1997) 1676.

    Article  PubMed  CAS  Google Scholar 

  31. Luecke, H., Schobert, B., Cartailler, J.P., Richter, H.T., Rosengarth, A., Needleman, R., Lanyi, J.K., J. Mol. Biol. 3000 (2000) 1237.

    Google Scholar 

  32. Kim, Y., Valent, K., Opella, S.J., Schendel, S.L. and Cramer, W.A. Prot. Sci. 7 (1998) 342.

    Article  CAS  Google Scholar 

  33. Doyle, D.A., Morais-Cabral, M., Pfuetzner, R.A., Kuo, A., Gulbis, J.M., Cohen, S.L., Chait, B.T., Science 280 (1998) 69.

    Article  PubMed  CAS  Google Scholar 

  34. Ketchem, R.R., Roux, B. and Cross, T.A., Structure 5 (1997) 1655.

    Article  PubMed  CAS  Google Scholar 

  35. Kovacs, F., Quine, J. and Cross, T.A., Proc. Natl. Acad. Sci. USA 96 (1999) 7910.

    Article  CAS  Google Scholar 

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Cross, T.A., Kim, S., Wang, J., Quine, J.R. (2001). From Topology to High Resolution Membrane Protein Structures. In: Kiihne, S.R., de Groot, H.J.M. (eds) Perspectives on Solid State NMR in Biology. Focus on Structural Biology, vol 1. Springer, Dordrecht. https://doi.org/10.1007/978-94-017-2579-8_6

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  • DOI: https://doi.org/10.1007/978-94-017-2579-8_6

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-90-481-5744-0

  • Online ISBN: 978-94-017-2579-8

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