Abstract
Plant regeneration from calli, cell suspensions andlor protoplasts has been extensively utilized in recent years both for the production of transgenic plants and for generating somaclonal variation (Jain, 1993a,b, 1997; Karp, 1995). This genetic variation is important in crop improvement, but also causes problems in maintenance of genetic fidelity during long-term in-vitro conservation of germplasm, in clonal propagation of germplasm and in the production of transgenic plants. The tissue culture-induced heritable variation, unlike the mutagen-induced variation, is often also associated with chromosome instability (Larkin and Scowcroft, 1981; Karp, 1991; Lee and Phillips, 1988; Peschke and Phillips, 1992; Singh, 1993). Although the causes of this chromosome instability are poorly understood, chromosome instability itself is believed to be one of the most common causes of tissue culture-induced variation (Phillips et al., 1994). In cell cultures a complete range of chromosomal aberrations is known to occur; however, due to reduced morphogenic potential and reduced viability of aberrant cultured cells, the range and frequency of these aberrations is generally reduced in regenerated plants. The literature on chromosomal variation originating in plant tissue cultures was earlier reviewed separately for cultured cells (Sunderland, 1973, 1977; Bayliss, 1980), and for regenerated plants (D’Amato, 1977). However, more recent reviews deal with chromosomal variation in cultured cells as well as regenerated plants, and present several hypotheses to explain the origin of these chromosomal variations (Lee and Phillips, 1988; Singh, 1993; Phillips et al., 1994). In this chapter, chromosomal aberrations as observed in cell suspensions, in calli and in the regenerated plants are reviewed. Causes of these chromosomal aberrations and their relationship with the heritable phenotypic variation in the regenerated plants are also discussed.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Ashmore, S.E. and A.R. Gould. 1981. Karyotype evolution in a tumour induced plant tissue culture analysed by Giemsa C-banding. Protoplasma. 106: 297–308.
Armstrong, K.C., C. Nakamura and W.A. Keller. 1983. Karyotype instability in tissue culture regenerants of triticale (Ă— Triticosecale Wittmack) cv. ‘Welsh’ from 6-month-old callus cultures. Z PflanzenzĂ¼chtg. 91: 233–245.
Asami, H., T. Shimada, N. Inomata and M. Okamoto. 1975. Chromosome constitution in cultured callus cells from four aneuploid lines of the homoeologous group 5 of Triticum aestivum. Japan J. Genet. 50: 283–289.
Balzan, R. 1978. Karyotype instability in tissue cultures derived from the mesocotyl of Zea mays seedlings. Caryologia. 31: 75–87.
Bayliss, M.W. 1980. Chromosomal variation in tissue culture. Int Rev Cytol Suppl. 11A: 113–144.
Bennici, A. 1974. Cytological analysis of roots, shoots and plants regenerated from suspension and solid in vitro cultures of haploid Pelargonium. Z PflanzenzĂ¼chtg. 72: 199–205.
Benzion, G., R.L. Phillips and H.W. Rines. 1986. Case histories of genetic variability in vitro: oats and maize. In: Cell Culture and Somatic Cell Genetics of Plants, vol. 3, pp. 435–448 (ed. I.K. Vasil). New York:
Bemardi, R., L. Natali, A. Cavallini, E. Polizzi and M. Durante. 1995. Genetic variation in plants of pea (Pisum sativum L.) regenerated from long term cultures. Agric Mediter. 125: 177–183.
Boyes, C.J. and I.K. Vasil. 1984. Plant regeneration by somatic embryogenesis from cultured young inflorescences of Sorghum arundinaceum (DESV,) Stapf. Var. Sudanense (Sudan grass). Plant Sci Lett. 35: 153–157.
Brettell, R.I.S., M.A. Pallotta, J.P. Gustafson and R. Appels. 1986. Variation at the Nor loci in triticale derived from tissue culture. Theor Appl Genet. 71: 637–643.
Brown, P.T.H., K. Yoneyama and H. Lörz. 1989. An investigation into the role of 5-Azacytidine in tissue culture. Theor Appl Genet. 78: 321–328.
Brown, P.T.H., J. Kyozuka, Y. Sukekiyo, Y. Kimura, K. Shimamoto and H. Lörz 1990. Molecular changes in protoplast - derived rice plants. Mol Gen Genet. 223: 324–328.
Brown, P.T.H., E. Gobel and H. Lörz. 1991. RFLP analysis of Zea mays callus cultures and their regenerated plants. Theor Appl Genet. 81: 227–232.
Cavallini, A., L. Natali, E. Polizzi and T. Giordani. 1996. Variation of repetitive DNA sequences in progenies of regenerated plants of Pisum sativum. J Hered. 87: 233–237.
Cecchini, A., L. Natali, A. Cavallini and M. Durante. 1992. DNA variations in regenerated plants of pea (Pisum sativum L.). Theor Appl Genet. 84: 874–879.
Cellarova, E. and K. Brunakova. 1996. Somaclonal variation in Hypericum perforatum (St. John’s Wort). In Biotechnology in Agriculture and Forestry, vol. 36: Somaclonal Variation in Crop Improvement, II. pp. 267–279 (ed. Y.P.S. Baiai) Berlin: Springer-Verlag.
Cooper, L.S., D.C. Cooper, A.C. Hildebrandt and A.J. Riker. 1964. Chromosome numbers in single cell clones of tobacco tissue. Am J Bot. 51: 284–290.
D’Amato, F. 1977. Cytogenetics of differentiation in tissue and cell cultures. In: Applied and Fundamental Aspects of Plants Cell, Tissue and Organ Culture, pp. 343–357 (eds J. Reinert and Y.P.S. Bajaj). Berlin: Springer Verlag.
Damiani, F., D. Mariotti, M. Pezzotti and S. Arcioni. 1985. Variation among plants regenerated from tissue culture of Lotus corniculatus L. Z PfanzenzĂ¼chtg. 94: 332–339.
De Paepe, R., D. Prat and T. Huguet. 1982. Heritable nuclear DNA changes in doubled haploid plants obtained by pollen culture of Nicotiana sylvestris. Plant Sci Lett. 28: 11–28
Dhillon, S.S., E.A. Wernsman and J.P. Miksche. 1983. Evaluation of nuclear DNA content and heterochromatin changes in anther derived dihaploids of tobacco (Nicotiana tabacum) var. Coker 139. Can J Genet Cytol. 25: 169–173.
Edallo, S., C. Zucchinali, M. Perenzin and F. Salamini. 1981. Chromosomal variation and frequency of spontaneous mutation associated with in vitro culture and plant regeneration in maize. Maydica. 26: 39–56.
Fluminhan, A. and T. Kameya. 1996. Behaviour of chromosomes in anaphase cells in embryogenic callus cultures of maize (Zea mays L.). TheorAppl Genet. 92: 982–990.
Foss, H.M., C.J. Roberts, K.M. Claeys and E.U. Selker. 1993. Abnormal chromosome behaviour in Neurospora mutants defective in DNA methylation. Science. 262: 1737–1741.
Franzone, P.M., E.Y. Suarez, R.M. Solari, E.A. Favret, R.D. Rios and A.H. Diaz-Paleo. 1996. Somaclonal variation in three Argentinian varieties of Triticum aestivum with different karyotype instability. Plant Breed. 115: 89–93.
Freeling, M. 1984. Plant transposable elements and insertion sequences. Annu Rev Plant Physiol. 35: 277–298.
Gill, B.S., C.R. Burnham, G.R. Stringam, J.T. Stout and W.H. Weinheimer. 1980. Cytogenetic analysis of chromosomal translocations in the tomato: preferential breakage in heterochromatin. Can J Genet Cytol. 22: 333–341.
Gill, B.S., L.N.W. Kam-Morgan and J.F. Shepard. 1985. An apparent meiotic mutation in a mesophyll cell orotoclone of the ‘Russet Burbank’ nntato J H4eredd 76 17–20
Gill, B.S., L.N.W. Kam-Morgan and J.F. Shepard. 1986. Origin of chromosomal and phenotypic variation in potato protoclones. J Hered. 77: 13–16.
Heinz, D.J., W.P. Mee and L.G. Nickell. 1969. Chromosome numbers of some Saccharum species hybrids and their cell suspension cultures. Am J Bot. 56: 450–456.
Hu, Han. 1996. Chromosome engineering in the Triticeae using pollen derived plants (CETPP). In: In Vitro Haploid Production in Higher Plants vol. 2 pp. 203–223 (eds S.M. Jain, S.K. Sopory and R.E. Veilleux). Dordrecht: Kluwer.
Jackson, J.A. and P.B. Dale. 1988. Callus induction, plant regeneration and an assessment of cytological variation in regenerated plants of Lolium multiflorum L. J Plant Physiol. 132: 351–355.
Jackson, J.A., S.J. Dalton and P.J. Dale. 1986. Plant regeneration from root callus in the forage grass, Lolium multiflorum. In: Plant Tissue Culture and its Agricultural Applications, pp. 85–89 (eds L.A. Withers and P.J. Alderson). London: Butterworth.
Jacky, P.B., B. Beek and G.R. Sutherland. 1983. Fragile sites in chromosomes: possible model for the study of spontaneous chromosome breakage. Science. 220: 69–70.
Jain, S.M. 1993a. Studies on somaclonal variation in ornamental plants. Acta Hort. 336: 365–372.
Jain, S.M. 1993b. Somaclonal variation in Begonia × elatior and Saintpaulia ionantha.a. Hort. 54: 221–231.
Jain, S.M. 1997. Creation of variability by mutation and tissue culture in improving plants. Acta Hort. (In press).
Johnson, S.S., R.L. Phillips and H.W. Rines. 1987. Possible role of heterochromatin in chromosome breakage induced by tissue culture in oats (Avena sativa, L.). Genome. 29: 439–446.
Kaeppler, S.M. and R.L. Phillips. 1993a. Tissue culture induced DNA methylation variation in maize. Proc Natl Acad Sci USA. 90: 8773–8776.
Kaeppler, S.M. and R.L. Phillips. 1993b. DNA methylation and tissue culture-induced variation in plants. In Vitro Cell Dev Biol. 29p, 125–130.
Kao, K.N., R.A. Miller, O.L. Ganborg and B.L. Harvey. 1970. Variation in chromosome number and structure in plant cells grown in suspension cultures. Can J Genet Cytol. 12: 279–301.
Karp, A. 1991. On the current understanding of somaclonal variation. Oxford Survey Pl Mol Cell Biol. 7: 1–58. (ed. B.J. Miflin).
Karp, A. 1995. Somaclonal variation as a tool for crop improvement. Euphytica. 85: 295–302.
Karp, A., P.G. Owen, S.H. Steele, P.J. Babeli and P.J. Kaltsikes. 1992. Variation in telomeric heterochromatin in somaclones of rye. Genome. 35: 590–593.
Karp, A., R.S. Nelson, E. Thomas and S.W.J. Bright. 1982. Chromosomal variation in protoplastderived potato plants. Theor Appl Genet. 63: 265–272.
Karp, A., S.H. Steele, S. Parmar, M.G.K. Jones, P.R. Shewry and A. Breiman. 1987a. Relative stability among barley plants regenerated from cultured immature embryos. Genome. 29: 405–412.
Karp, A., Q.S. Wu, S.H. Steele and M.G.K. Jones. 1987b. Chromosome variation in dividing protoplasts and cell suspensions of wheat. Theor Appl Genet. 74: 140–146.
Kidwell, K.K. and T.C. Osborn. 1993. Variation among alfalfa somaclones in copy number of repeated DNA sequences. Genome. 36: 906–912.
Kilian, A., C. Stiff and A. Kleinhofs. 1995. Barley telomeres shorten during differentiation, but grow in callus culture. Proc Natl Acad Sci USA. 92: 9555–9559.
Landsmann, J. and H. Uhrig. 1985. Somaclonal variation in Solanum tuberosum detected at the molecular level. Theor Appl Genet. 71: 500–505.
Larkin, P.J. and W.R. Scowcroft. 1981. Somaclonal variation - a novel source of variability from cell cultures for plant improvement. Theor Appl Genet. 60: 197–214.
Lee, M. and R.L. Phillips. 1987. Genome rearrangements in maize induced by tissue culture. Genome. 29: 122–128.
Lee, M. and R.L. Philips. 1988. The chromosomal basis of somaclonal variation. Annu Rev Plant Physiol Mol Biol. 39: 413–437.
Linacero, R. and A.M. Vazquez. 1992. Cytogenetic variation in rye regenerated plants and their progeny. Genome. 35: 428–430.
Longley, A.E. 1961. Breakage points for four corn translocation series and other corn chromosome aberrations. Crop Res. USDA-ARS., Tech. Rep. 34–16: 1–40
Lorz, H. and W.R. Scowcroft. 1983. Variability among plants and their progeny from protoplasts of Su/su heterozygotes of Nicotiana tabacum. Theor Appl Genet. 66: 67–75.
Lu, C.Y., S.F. Chandler and I.K. Vasil. 1984. Somatic embryogenesis and plant regeneration from cultured immature embryos of rye (Secale cereale L.). J Plant Physiol. 115: 237–244.
McClintock, B. 1984. The significance of responses of genome to challenge. Science. 226: 792–801.
McCoy, T.J. and R.L. Phillips. 1982. Chromosome stability in maize (Zea mays) tissue culture and sectoring in some regenerated plants. Can J Genet Cytol. 24: 559–565.
McCoy, T.J., R.L. Phillips and H.W. Rines. 1982. Cytogenetic analysis of plants regenerated from oat (Avena sativa) tissue cultures: high frequency of partial chromosome loss. Can J Genet Cytol. 24: 37–50.
Mitra, J., M.O. Mapes and F.C. Steward. 1960. Growth and organised development of cultured cells. IV. The behaviour of the nucleus. Am J Bot. 47: 357–368.
Mix G., H.M. Wilson and B. Foroughi-Wehr. 1978. The cytological status of plants of Hordeum vulgare L. regenerated from microspore callus. Z PflanzenzĂ¼chtg. 80: 89–99.
Murashige, T. and R. Nakano. 1967. Chromosome complement as a determinant of the morphogenic potential of tobacco cells. Am J Bot. 54: 963–970.
Murata, M. and T.J. Orton. 1983. Chromosome structural changes in cultured celery cells. In Vitro. 19: 83–89.
Natali, L. and A. Cavallini. 1987. Regeneration of pea (Pisum sativum L.) plantlets by in vitro culture of immature embryos. Plant Breed. 99: 172–176.
Natali, L., T. Giordani, G. Cionini, C. Pugliesi, M. Fambrini and A. Cavallini. 1995. Heterochromatin and repetitive DNA frequency variation in regenerated plants of Helianthus annuus L. Theor Appl Genet. 91: 395–400.
Neves, N., A. Barao, A. Castilho, M. Silva, L. Morais, V. Carvalho, W. Viegas and R.N. Jones. 1992. Influence of DNA methylation on rye B-chromosome non-disjunction. Genome. 35: 650–652.
Novak, F.J. 1974. The changes of karyotype in callus cultures of Allium sativum L. Caryologia. 27: 45–54.
Orton, T.J. 1985. Genetic instability during embryogenic cloning of celery. Plant Cell Tissue Org Cult. 4: 159–169.
Partanen, C.R. 1963. Plant tissue culture in relation to development cytology. Int Rev Cytol. 15: 215–243.
Peschke, V.M. and R.L. Phillips. 1992. Genetic implications of somaclonal variation in plants. Adv Genet. 30: 41–75.
Peschke, V.M., R.L. Phillips and B.G. Gengenbach. 1987. Discovery of transposable element activity among progeny of tissue culture-derived maize. Science. 238: 804–807.
Phillips, R.L., S.M. Kaeppler and P. Olhoft. 1994. Genetic instability of plant tissue cultures: Breakdown of normal controls. Proc Natl Acad Sci USA. 91: 5222–5226.
Pijnacker, L.P. and M.A. Ferwerda. 1987. Karyotype variation in aminoethylcysteime resistant cell and callus cultures and regenerated plants of a dihaploid potato (Solanum tuberosum). Plant Cell Rep. 6: 385–388.
Pijnacker, L.P., K. Sree Ramulu, P. Dijkhuis and M.A. Ferwerda. 1989. Flow cytometric and karyological analysis of polysomaty and polyploidization during callus formation from leaf segments of various potato genotypes. Theor Appl Genet. 77: 102–110.
Pohler, W., G. Schumann, M. Sulze and I.-M. Kummer. 1988. Cytological investigation of callus tissue and regenerated plants from triticale anther culture. Biol Zentralbl. 107: 643–652.
Pryor, A., K. Faulkner, M.M. Rhoades and W.J. Peacock. 1980. Asynchronous replication of heterochromatin in maize. Proc Natl Acad Sci USA. 77: 6705–6709.
Puolimatka, M. and A. Karp. 1993. Effect of genotype on chromosome variation in tissue culture of inbred and outbred rye. Heredity. 71: 138–144.
Qiren, C., Z. Zhenhua and G. Yuanhua. 1985. Cytogenetical analysis of aneuploids obtained from pollen clones of rice (Oryza sativa) Theor Appl Genet. 71: 506–512.
Quemada, H., E.J. Roth and K.G. Lark. 1987. Changes in methylation of tissue cultured soy bean cells detected by digestion with the restriction enzymes Hpa II and MSPI. P lant Cell Rep 6: 63–66.
Rhoades, M.M. and E. Dempsey. 1971. On the mechanism of chromatin loss induced by the B chromosome of maize. Genetics. 71: 73–96.
Rhoades, M.M. and E. Dempsey. 1973. Chromatin elimination induced by the B chromosome of maize. J Hered. 64: 12–18.
Rieger, R., A. Michaelis, I. Schubert, P. Dobel and H.W. Jank. 1975. Nonrandom intrachromosomal distribution of chromatid aberrations induced by X-rays, alkylating agents and ethanol in Vicia faba. Mut Res. 27: 69–79.
Sacristan, M.D. 1971. Karyotypic changes in callus cultures from haploid and diploid plants of Crepis capillaris (L.) Wallr. Chromosoma. 33: 273–283.
Sacristan, M.D. 1982. Resistance responses to Phoma lingam of plants regenerated from selected cell and embryogenic cultures of haploid Brassica napus. Theor Appl Genet. 61: 193–200.
Schneider, S., G. Reustle and E. Zyprian. 1996. Detection of somaclonal variation in grapevine regenerants from protoplasts by RAPD-PCR. Vitis. 35: 99–100.
Shimada, T. 1971. Chromosome constitution of tobacco and wheat callus cells. Jpn J Genet. 46: 235–241.
Shimada, T. and M. Tabata. 1967. Chromosome numbers in cultured pith tissue of tobacco. Jpn J Genet. 42: 195–201.
Shimamoto, K. 1995. The molecular biology of rice. Science. 270: 1772–1773.
Singh, B.D. and B.L. Harvey. 1975. Selection for diploid cells in suspension cultures of Haplopappus gracilis. Nature. 253: 453.
Singh, R.J. 1986. Chromosomal variation in immature embryo derived calluses of barley (Hordeum vul2are L.). Theor Appl Genet. 72: 710–716.
Singh, R.J. 1993. Plant Cytogenetics. Boca Raton: CRC Press.
Sree Ramulu, K., P. Dijkhuis and S. Roest. 1983. Phenotypic variation and ploidy level of plants regenerated from protoplasts of tetraploid potato (Solanum tuberosum L. cv. ‘Bintje’). Theor Appl Genet. 65: 329–338.
Sree Ramulu, K., P. Dijkhuis, Ch. H. Hanisch TenCate and B. De Groot. 1985. Patterns of DNA and chromosome variation during in vitro growth in various genotypes of potato. Plant Sci. 41: 69–78.
Sree Ramulu, K., P. Dijkhuis, S. Roest, G.S. Bokelmann and B. De Groot. 1984. Early occurrence of genetic instability in protoplast cultures of potato. Plant Sci Lett. 36: 79–86.
Sree Ramulu, K., P. Dijkhuis, S. Roest, G.S. Bokelmann and B. De Groot. 1986. Variation in phenotype and chromosome number of plants regenerated from protoplasts of dihaploids and tetraploid potato. Plant Breed. 97: 119–128.
Sunderland, N. 1973. Nuclear cytology. In Plant Cell and Tissue Culture, pp. 205–239 (ed. H.E. Street). Oxford: Blackwell.
Sunderland, N. 1977. Nuclear cytology. In Plant Tissue and Cell Culture, pp. 177–205 (ed. H.E. Street). Berkeley: University of Columbia Press.
Swedlund, B and I.K. Vasil. 1985. Cytogenetic characterization of embryogenic callus and regenerated plants of Pennisetum americanum (L.) K. Schum. Theor Appl Genet. 69: 575–581.
Tewari, R., R.C. Juyal, B.K. Thelma, B.C. Das and S.R.V. Rao. 1987. Folate-sensitive fragile sites on X-chromosome heterochromatin of the Indian mole rat, Nesokia indica. Cytogenet Cell Genet. 44: 11–17.
Toriyama K., K. Hinata and T. Sasaki. 1986. Haploid and diploid plant regeneration from protoplasts of anther callus in rice. Theor Appl Genet. 73: 16–19.
Torrey, J.G. 1959. Experimental modification of development in the root. In: Cell, Organism and Milieu, pp. 189–222 (ed. D. Rydnick). New York: Ronald Press.
Uhrig, H. 1985. Genetic selection and liquid medium conditions improve the yield of androgenetic plants from diploid potatoes. Theor Appl Genet. 71: 455–460.
Wenzel, G. and H. Uhrig. 1981. Breeding for nematode and virus resistance in potato via anther culture. Theor Appl Genet. 59: 333–340.
Wenzel, G., F. Hoffmann and E. Thomas. 1977. Increased induction and chromosome doubling of androgenetic haploid rye. Theor Appl Genet. 51: 81–86.
Wersuhn, G. and B. Sell. 1988. Numerical chromosomal aberrations in plants regenerated from pollen, protoplasts and cell cultures of Nicotiana tabacum L. cv. ‘Samsun’. Biol. Zentralbl 107: 439–445.
Winfield, M., M.R. Davey and A. Karp. 1993. A comparison of chromosome instability in cell suspensions of diploid, tetraploid and hexaploid wheats. Heredity. 70: 187–194.
Zhang, Y.F. M.B. Yuan and Z.Y. Guan. 1994. Identification of translocation heterozygosity of barley from somaclonal variation. Acta Agriculture Universitatis Jiangxiensis. 16: 15–19.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1998 Springer Science+Business Media Dordrecht
About this chapter
Cite this chapter
Gupta, P.K. (1998). Chromosomal Basis of Somaclonal Variation in Plants. In: Jain, S.M., Brar, D.S., Ahloowalia, B.S. (eds) Somaclonal Variation and Induced Mutations in Crop Improvement. Current Plant Science and Biotechnology in Agriculture, vol 32. Springer, Dordrecht. https://doi.org/10.1007/978-94-015-9125-6_9
Download citation
DOI: https://doi.org/10.1007/978-94-015-9125-6_9
Publisher Name: Springer, Dordrecht
Print ISBN: 978-90-481-4956-8
Online ISBN: 978-94-015-9125-6
eBook Packages: Springer Book Archive