Skip to main content

Rice molecular genetic map using RFLPs and its applications

  • Chapter
Oryza: From Molecule to Plant

Abstract

In the past decade, notable progress has been made in rice molecular genetic mapping using genomic or cDNA clones. A total of over 3000 DNA markers, mainly with RFLPs, have been mapped on the rice genome. In addition, many studies related to tagging of genes of interest, gene isolation by map-based cloning and comparative mapping between cereal genomes have advanced along with the development of a high-density molecular genetic map. Thus rice is considered a pivotal plant among cereal crops and, in addition to Arabidopsis, is a model plant in genome analysis. In this article, the current status of the construction of rice molecular genetic maps and their applications are reviewed.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Arumuganathan K, Earle ED: Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208–218 (1991).

    Article  CAS  Google Scholar 

  2. Ahn S, Tanksley SD: Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90: 7980–7984 (1993).

    Article  PubMed  CAS  Google Scholar 

  3. Ahn S, Anderson JA, Sonrrells ME, Tanksley SD: Homoeologous relationships of rice, wheat and maize chromosomes. Mol Gen Genet 241: 483–490 (1993).

    Article  PubMed  CAS  Google Scholar 

  4. Antonio BA, Inoue T, Kajiya H, Nagamura Y, Kurata N, Minobe Y, Yano M, Nakagahra M, Sasaki T: Comparison of genetic distance and order of DNA markers in five populations of rice. Genome 39: 946–956 (1996).

    Article  PubMed  CAS  Google Scholar 

  5. Ashikawa I, Kurata N, Nagamura Y, Minobe Y: Cloning and mapping of telomere-associated sequences from rice. DNA Res 1: 67–76 (1994).

    Article  PubMed  CAS  Google Scholar 

  6. Beckmann JS, Soller M: Restriction fragment length polymorphisms in genetic improvement: methodologies, mapping and costs. Theor Appl Genet 67: 35–43 (1983).

    Article  Google Scholar 

  7. Beckmann JS, Soller M: Restriction fragment length polymorphisms and genetic improvement of agricultural species. Euphytica 35: 111–124 (1986).

    Article  Google Scholar 

  8. Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Staskawicz: RPS2 of Arabidopsis thaliana a leucine-rich repeat class of plant disease resistance genes. Science 265: 1856–1860 (1994).

    Article  PubMed  CAS  Google Scholar 

  9. Bematzky R, Tanksley SD: Towards a saturated linkage map in tomato based on isozymes and random cDNA sequences. Genetics 112: 887–898 (1986).

    Google Scholar 

  10. Binelli G, Gianfranceschi L, Pe ME, Taramino, Busso C, Stenhouse J, Ottaviano E: Similarity of maize and sorghum genomes as revealed by maize RFLP probes. Theor Appl Genet 84: 10–16 (1992).

    Article  CAS  Google Scholar 

  11. Bonierbale M, Plaisted RL, Tanksley SD: RFLP maps of potato and tomato based on a common set of clones reveal modes of chromosomal evolution. Genetics 120: 1095–1103 (1988).

    PubMed  CAS  Google Scholar 

  12. Botstein D, White RL, Skolnick M, Davis R: Construction of a genetic linkage map in man using restriction fragment polymorphism. Am J Hum Genet 32: 314–331 (1980).

    PubMed  CAS  Google Scholar 

  13. Burr B, Bun FA, Thompson KH, Albertson MC, Stuber CW: Gene mapping with recombinant inbreds in maize. Genetics 118: 519–526 (1988).

    PubMed  CAS  Google Scholar 

  14. Burr B, Burr FA, Matz EC: Maize molecular map (Zea mays L.) (2N=20) In: O’Brien SJ (ed) Genetic Maps, Book 6: Plants, pp. 6.39–6.60. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1993).

    Google Scholar 

  15. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD: Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251–1274 (1994).

    PubMed  CAS  Google Scholar 

  16. Cho YG, Eun MY, McCouch, Chae YA: The semidwarf gene, sd-1,of rice (Oryza sativa L.). II. Molecular mapping and marker-assisted selection. Theor Appl Genet 89: 54–59 (1994).

    CAS  Google Scholar 

  17. Devos KM, Gale MD: Extended genetic maps of the homoeologous group 3 chromosomes of wheat, rye and barley. Theor Appl Genet 85: 649–652 (1993).

    CAS  Google Scholar 

  18. Devos K, Gale M: The genetic maps of wheat and their potential in plant breeding. Outlook Agric 22: 93–99 (1993).

    Google Scholar 

  19. Dufour P, Grivet L, D’ Hont A, Deu M, Tronche G, Glaszmann, Hamon P: Comparative genetic mapping between duplicated segments on maize chromosomes 3 and 8 and homoeologous regions in sorghum and sugarcane. Theor Appl Genet 92: 1024–1030 (1996).

    Article  CAS  Google Scholar 

  20. Dunford RP, Kurata N, Laurie DA, Money TA, Minobe Y, Moore G: Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae. Nucl Acids Res 23: 2724–2728 (1995).

    Article  PubMed  CAS  Google Scholar 

  21. Fukuoka S, Inoue T, Miyao A, Monna L, Zhong HS, Sasaki T, Minobe Y: Mapping of sequence-tagged sites in rice by single strand conformation polymorphism. DNA Res 1: 271–277 (1994).

    Article  PubMed  CAS  Google Scholar 

  22. Gardiner JM, Coe EH, Hancock SM, Hoisington DA, Chao S: Development of a core RFLP map in maize using an immortalized F2 population. Genetics 134: 917–930 (1993).

    PubMed  CAS  Google Scholar 

  23. Graner A, Jahoor A, Schondelmaier J, Siedler H, Pillen K, Fischbeck G, Wenzel G, Hermann RG: Construction of an RFLP map of barley. Theor Appl Genet 83: 250–256 (1991).

    Article  Google Scholar 

  24. Grant MR, Godiard L, Straube E, Ashfield T, Lewald, Sattler A, Innes RW, Dangl JL: Structure of the Arabidopsis RPMI gene enabling dual specificity disease resistance. Science 269: 843–846 (1995).

    Article  PubMed  CAS  Google Scholar 

  25. Hart GE, Gale MD: Biochemical/molecular loci of hexaploid wheat (Triticum aestivum 2n=42 genomes AABBDD). In: O’Brien SJ (ed) Genetic Maps. Book 6, pp. 628–638. Cold Spring Harbor Laboratory Press, NY (1990).

    Google Scholar 

  26. Harushima Y. Kurata N, Yano M, Nagamura Y, Sasaki T, Minobe Y, Nakagahra M: Detection of segregation distortions in an indica-japonica rice cross using a high-resolution molecular map. Theor Appl Genet 92: 145–150 (1996).

    Article  CAS  Google Scholar 

  27. Helentjaris T, Slocum M, Wright S, Schaefer A: Construction of genetic linkage maps in maize and tomato using restriction fragment length polymorphisms. Theor Appl Genet 72: 761–769 (1986).

    Article  CAS  Google Scholar 

  28. Hirabayashi H, Ogawa T: RFLP mapping of Bph-1 (brown plant hopper resistance gene) in rice. Breed Sci 45: 369–371 (1995).

    CAS  Google Scholar 

  29. Huang N, McCouch S, Mew T, Parco A. Guiderdoni E: Doubled haploid population in rice. Rice Genet Newsl 11: 134–137 (1994).

    Google Scholar 

  30. Hulbert SH, Richer TE, Axtell JD, Bennetzen JL: Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proc Natl Acad Sci USA 87: 4251–4255 (1990).

    Article  PubMed  CAS  Google Scholar 

  31. Ideta O, Yoshimura A, Matsumoto H, Tsunematsu H, Iwata N: Integration of conventional and RFLP linkage maps in rice. I. Chromosomes 1, 2, 3 and 4. Rice Genet Newsl 9: 128–129 (1992).

    Google Scholar 

  32. Ideta O, Yoshimura A, Matsumoto H, Tsunematsu H, Saito H, Iwata N: Integration of conventional and RFLP linkage maps in rice. II. Chromosomes 6, 9, 10 and 11. Rice Genet Newsl 10: 87–89 (1993).

    Google Scholar 

  33. Ideta O, Yoshimura A, Ashikari M, Iwata N: Integration of conventional and RFLP linkage maps in rice. III. Chromosomes 5,7,8 and 12. Rice Genet Newsl 11: 116–117 (1994).

    Google Scholar 

  34. Inoue T, Zhong HS, Miyao A, Ashikawa I, Monna L, Fukuoka S, Miyadera N, Nagamura Y, Kurata N, Sasaki T, Minobe Y: Sequence-tagged sites (STSs) as standard landmarkers in the rice genome. Theor Appl Genet 89: 728–734 (1994).

    Article  CAS  Google Scholar 

  35. Ishii T, Brar DS, Multani DS, Khush GS: Molecular tagging of genes for brown plant hopper and earliness introgressed from Oryza australiensis into cultivated rice, O. sativa. Genome 37: 217–221 (1994).

    Article  PubMed  CAS  Google Scholar 

  36. Izawa T, Shimamoto K: Becoming a model plant: the importance of rice to plant science. Trends Plant Sci 1: 95–99 (1996).

    Article  Google Scholar 

  37. Jena KK, Khush GS, Kochert G: Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa. Genome 37: 382–389 (1988).

    Article  Google Scholar 

  38. Kilian A, Kudrna DA, Kleinhofs A, Yano M, Kurata N, Steffenson B, Sasaki T: Rice-barley synteny and its application to saturation mapping of the barley Rpgl region. Nucl Acids Res 23: 2729–2733 (1995).

    Article  PubMed  CAS  Google Scholar 

  39. Kinoshita T: Report of committee on gene symbolization. Rice Genet Newsl 12: 9–153 (1995).

    Google Scholar 

  40. Kishimoto N, Higo H, Abe K, Arai S, Saito A, Higo K: Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of eDNA markers of known functions. Theor Appl Genet 88: 722–726 (1994).

    Article  CAS  Google Scholar 

  41. Kleinhofs A, Kilian A, Saghai Maroof MA, Biyashev RM, Hayes P. Chen FQ, Lapitan N, Fenwick A, Blake TK, Kanazin V, Ananiev E, Dahleen L, Kudrna D, Bollinger J, Knapp SJ, Liu B, Sorrells M, Heun M. Franckowiak JD, Hoffman D, Skadsen R, Steffenson BJ: A molecular. isozyme and morphological map of the barley (Hordeum vulgare) genome. Theor Appl Genet 86: 705–712 (1993).

    Article  CAS  Google Scholar 

  42. Kurata N. Moore G, Nagamura Y, Foote T. Yano M, Minobe Y, Gale M: Conservation of genome structure between rice and wheat. Bio/technology 12: 276–278 (1994).

    Article  CAS  Google Scholar 

  43. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka H, Miyao A, Monna L, Zhong HS, Tamura Y, Wang ZX, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y: A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet 8: 365–372 (1994).

    Article  PubMed  CAS  Google Scholar 

  44. Landry BS, Michelmore RW: Selection of probes for restriction fragment length analysis from plant genomic clones. Plant Mol Biol Rep 3: 174–179 (1985).

    Article  CAS  Google Scholar 

  45. Landry BS, Kesseli R, Leung H, Michelmore RW: Comparison of restriction endonucleases and sources of probes for their efficiency in detecting restriction fragment length polymorphism in lettuce (Lactuca sativa L.). Theor Appl Genet 74: 646–653 (1987).

    Article  CAS  Google Scholar 

  46. Liu YG, Tsunewaki K: Restriction fragment length polymorphism (RFLP) analysis in wheat. II. Linkage maps of the RFLP sites in common wheat. Jpn J Genet 66: 617–633 (1991).

    Article  PubMed  CAS  Google Scholar 

  47. Mackin DJ, Salam MA, Wang ZY, Tanksley SD: A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice. Theor Appl Genet 85: 536–540 (1993).

    Google Scholar 

  48. Martin GB, Brommonschenke SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD: Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262: 1432–1436 (1993).

    Article  PubMed  CAS  Google Scholar 

  49. McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, Tanksley SD: Molecular mapping of rice chromosomes. Theor Appl Genet 76: 815–829 (1988).

    Article  CAS  Google Scholar 

  50. McCouch SR, Abenes ML, Angeles R, Khush GS, Tanksley SD: Molecular tagging of a recessive gene, xa-5,for resistance to bacterial blight of rice. Rice Genet Newsl 8: 143–145 (1991).

    Google Scholar 

  51. Mew TV, Parco AS, Hittalmani S, Inukai T, Nelson R, Zeigler S, Huang N: Fine-mapping of major genes for blast resistance in rice. Rice Genet Newsl 11: 126–128 (1994).

    Google Scholar 

  52. Mindrinos M, Katagiri F, Yu GL, Ausubel FM: The A. thaliana disease-resistant gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell 78: 1089–1099 (1994).

    Article  PubMed  CAS  Google Scholar 

  53. Miyamoto M, Ando I, Rybka K, Kodama O, Kawasaki S: High resolution mapping of the indica-derived rice blast resistance genes. I. Pi-b Mol Plant-Microbe Interact 9: 6–13 (1996).

    Article  CAS  Google Scholar 

  54. Mohan M, Nair S, Bentur RS, Rao UP, Bennett J: RFLP and RAPD mapping of the rice Gm2 gene that confers resistance to biotype 1 of gall midge (Orseolia oryzae) Theor Appl Genet 87: 782–788 (1994).

    Article  CAS  Google Scholar 

  55. Moore G, Devos KM, Wang Z, Gale MD: Grasses, line up and form a circle. Curr Biol 5: 737–739 (1995).

    CAS  Google Scholar 

  56. Monna L, Miyao A, Inoue T, Fukuoka S, Yamazaki KM, Zhong HS, Sasaki T, Minobe Y: Determination of RAPD markers in rice and their conversion into sequence tagged sites (STSs) and STS-specific primers. DNA Res 1: 139–148 (1994).

    Article  PubMed  CAS  Google Scholar 

  57. Nagamura Y, Inoue T, Antonio BA, Shimano T, Kajiya H, Shomura A, Lin SY, Kuboki Y, Harushima Y, Kurata N, Minobe Y, Yano M, Sasaki T: Conservation of duplicated segments between rice chromosomes 11 and 12. Breed Sci 45: 373–376 (1995).

    CAS  Google Scholar 

  58. Nair S, Bentur JS, Prasada Rao U, Mohan M: DNA markers tightly linked to a gall midge resistance gene (Gm2) are potentially useful for marker-aided selection in rice breeding. Theor Appl Genet 91: 68–73 (1995).

    CAS  Google Scholar 

  59. Nair S, Kumar A. Srivastava MN, Mohan M: PCR-based DNA markers linked to a gall midge resistance gene, Gm4t, has potential for marker-aided selection in rice. Theor Appl Genet 92: 660–665 (1996).

    Article  CAS  Google Scholar 

  60. O’Donoughue LS, Kianian SF, Rayapati PJ, Penner GA, Sorrells ME, Tanksley SD, Phillips RL, Rines HW, Lee M, Fedak G, Molnar SJ, Hoffmann D, Salas CA, Wu B, Autrique E, van Deynze A: A molecular map of cultivated oats. Genome 38: 368–380 (1995).

    Article  PubMed  Google Scholar 

  61. Pereira MG, Lee M, Bramel-Cox P, Woodman W, Doebley J, Whitkus R: Construction of an RFLP map in sorghum and comparative mapping in maize. Genome 37: 236–243 (1994).

    Article  PubMed  CAS  Google Scholar 

  62. Powell W, Machray GC, Provan J: Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1: 215–222 (1996).

    Google Scholar 

  63. Qian HR, Zhuang JY, Lin HX, Lu J, Zheng KL: Identification of a set of RFLP probes for subspecies differentiation on Otyza sativa L.. Theor Appl Genet 90: 878–884 (1995).

    Article  CAS  Google Scholar 

  64. Redona ED, Mackill DJ: Molecular mapping of quantitative trait loci in japonica rice. Genome 39: 395–403 (1996).

    Article  PubMed  CAS  Google Scholar 

  65. Ronald P, Albano B, Tabien R, Abenes L, Wu K, McCouch SR, Tanksley SD: Genetic and physical analysis of rice bacterial blight resistance locus, Xa21 Mol Gen Genet 236: 113–120 (1992).

    PubMed  CAS  Google Scholar 

  66. Saghai Maroof MA, Yang GP, Biyashev, Maughan PJ, Zhang Q: Analysis of the barley and rice genomes by comparative RFLP linkage mapping. Theor Appl Genet 92: 541–551 (1996).

    Article  CAS  Google Scholar 

  67. Saito A, Yano M, Kishimoto N, Nakagahra M, Yoshimura A, Saito K, Kuhara S, Ukai Y, Kawase M, Nagamine T, Yoshimura S, Ideta O, Ohsawa R, Hayano Y, Iwata N, Sugiura M: Linkage map of restriction fragment length polymorphism loci in rice. Jpn J Breed. 41: 665–670 (1991).

    CAS  Google Scholar 

  68. Sasaki T, Song J, Koga-Ban Y, Matsui E, Fang F. Higo H, Nagasaki H, Hori M, Miya M, Murayama-Kayano E, Takiguchi T, Takasuga A, Niki T, Ishimaru K, Ikeda H, Yamamoto Y, Mukai Y, Ohta I, Miyadera N, Havukkala I, Minobe Y: Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J 6: 615–624 (1994).

    Article  PubMed  CAS  Google Scholar 

  69. Singh K, Ishii T, Parco A, Huang N, Brar D, Khush GS: Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.). Proc Natl Acad Sci USA 93: 6163–6168 (1996).

    Article  PubMed  CAS  Google Scholar 

  70. Song WY, Wang GL, Chen LL, Kim HS, Holsten T, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P: The rice disease resistance gene, Xa21, encodes a receptor kinase-like protein. Science 270: 1804–1806 (1995).

    Article  PubMed  CAS  Google Scholar 

  71. Tanksley SD: Molecular markers in plant breeding. Plant Mol Biol Rep 1: 3–8 (1983).

    Article  CAS  Google Scholar 

  72. Tanksley SD, Young ND, Paterson AH, Bonierbale MW: RFLP mapping in plant breeding: New tools for an old science. Bio/technology 7: 257–264 (1989).

    Article  CAS  Google Scholar 

  73. Tanksley SD, Ganal NW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Röder MS, Wing RA, Wu W, Young ND: High density molecular linkage maps of the tomato and potato genomes. Genetics 132: 1141–1160 (1992).

    PubMed  CAS  Google Scholar 

  74. Tsunematsu H, Yoshimura A, Harushima Y, Nagamura Y, Kurata N, Yano M, Sasaki T, Iwata N: RFLP framework map using recombinant inbred lines in rice. Breed Sci 46: 279–284 (1996).

    Google Scholar 

  75. Umehara Y, Inagaki A, Tanoue H, Yasukouchi Y, Nagamura Y, Saji S, Otsuki Y, Fujimura T, Kurata N, Minobe Y: Construction and characterization of a rice YAC library for physical mapping. Mol Breed 1: 79–89 (1995).

    Article  CAS  Google Scholar 

  76. Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME: Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248: 744–754 (1995).

    Article  PubMed  Google Scholar 

  77. Van Deynze AE, Nelson JC, O’Donoughue, Ahn SN, Siripoonwiat W, Harrington SE, Yglesias ES, Braga DP, McCouch SR, Sorrells ME: Comparative mapping in grasses. Oat relationships. Mol Gen Genet 249: 349–356 (1995).

    Article  PubMed  Google Scholar 

  78. Van Deynze AE, Doubcovsky J, Gill KS, Nelson JC, Sorrells ME, Dvorak J, Gill BS, Lagudah ES, McCouch SR, Apples R: Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oats. Genome 38: 45–59 (1995).

    Article  PubMed  CAS  Google Scholar 

  79. Vos P, Hogers R, Bleeker M, Reijians M, Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M: AFLP: a new technique for DNA fingerprinting. Nucl Acids Res 23: 4407–4414 (1995).

    Article  PubMed  CAS  Google Scholar 

  80. Wang GL, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, Nelson RJ: RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136: 1421–1434 (1994).

    PubMed  CAS  Google Scholar 

  81. Wang ZY, Tanksley SD: Restriction fragment length polymorphism in Oryza sativa L.. Genome 32: 1113–1118 (1989).

    Article  CAS  Google Scholar 

  82. Whitkus R, Doebley J, Lee M: Comparative genome mapping of sorghum and maize. Genetics 132: 1119–1130 (1992).

    PubMed  CAS  Google Scholar 

  83. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acids Res 18: 6531–6535 (1990).

    Article  PubMed  CAS  Google Scholar 

  84. Wu J, Matsui E, Yamamoto K, Nagamura Y, Kurata N, Sasaki T, Minobe Y: Genomic organization of 57 ribosomal protein genes in rice (Oryza sativa L.) through RFLP mapping. Genome 38: 1189–1200 (1995).

    Article  PubMed  CAS  Google Scholar 

  85. Wu KS, Tanksley SD: Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241: 225–235 (1993).

    Article  PubMed  CAS  Google Scholar 

  86. Xu GW, Magill CW, Schertz KF, Hart GE: A RFLP linkage map of Sorghum bicolor (L.) Moench. Theor Appl Genet 89: 139–145 (1994).

    Article  CAS  Google Scholar 

  87. Yamagishi M, Yano M, Fukuta Y, Fukui K, Otani M, Shimada T: Distorted segregation of RFLP markers in regenerated plants derived from anther culture of an Fi hybrid of rice. Genes Genet Syst 71: 37–41 (1996).

    Article  CAS  Google Scholar 

  88. Yano M, Harushima Y, Nagamura Y, Kurata N, Minobe Y, Sasaki T: Fine scale mapping of quantitative trait loci conferring heading date in rice, Oryza sativa L.. submitted.

    Google Scholar 

  89. Yoshimura S, Nelson R, Yoshimura A, Mew TW, Iwata N: RFLP mapping of the bacterial blight resistance genes Xa-3 and Xa-4 Rice Genet Newsl 9: 136–138 (1992).

    Google Scholar 

  90. Yoshimura S, Yoshimura A, Saito A, Kishimoto N, Kawase M, Yano M, Nakagahra M, Ogawa T, Iwata N: RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4 Jpn J Genet 67: 29–37 (1992).

    Article  CAS  Google Scholar 

  91. Yoshimura S, Yoshimura A, Nelson RJ, Mew TW, Iwata N: Tagging Xa-1,the bacterial blight resistance gene in rice, by using RAPD markers. Breed Sci 45: 81–85 (1995).

    CAS  Google Scholar 

  92. Yoshimura S, Umehara Y, Kurata N, Nagamura Y, Sasaki T, Minobe Y, Iwata N: Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice. Theor Appl Genet 93: 117–122 (1996).

    Article  CAS  Google Scholar 

  93. Young ND, Tanksley SD: Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theor Appl Genet 77: 95–101 (1989).

    Article  Google Scholar 

  94. Yu ZH, Mackill DJ, Bonman JM, Tanksley SD: Tagging genes for blast resistance in rice via linkage to RFLP markers. Theor Appl Genet 81: 471–476 (1991).

    Article  Google Scholar 

  95. Yu ZH, McCouch SR, Kinoshita T, Sato S, Tanksley SD: Association of morphological and RFLP markers in rice (Oryza sativa L.). Genome 38: 566–574 (1995).

    Article  PubMed  CAS  Google Scholar 

  96. Zhao X, Kochert G: Phylogenetic distribution and genetic mapping of a (GGC)n microsatellite from rice (Oryza sativa L.). Plant Mol Biol 21: 607–614 (1993).

    Article  PubMed  CAS  Google Scholar 

  97. Zhang G, Angeles ER, Abenes MLP, Khush GS, Huang N: RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice. Theor Appl Genet 93: 65–67 (1966).

    Article  Google Scholar 

  98. Zhu LH, Chen Y, Xu YB, Xu JC, Cai HW, Ling ZZ: Construction of a molecular map of rice and gene mapping using a doubled haploid population of a cross between indica and japonica varieties. Rice Genet Newsl 10: 132–135 (1993).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Takuji Sasaki Graham Moore

Rights and permissions

Reprints and permissions

Copyright information

© 1997 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Nagamura, Y., Antonio, B.A., Sasaki, T. (1997). Rice molecular genetic map using RFLPs and its applications. In: Sasaki, T., Moore, G. (eds) Oryza: From Molecule to Plant. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-5794-0_8

Download citation

  • DOI: https://doi.org/10.1007/978-94-011-5794-0_8

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-6446-0

  • Online ISBN: 978-94-011-5794-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics