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Comparative genetics of flowering time

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Oryza: From Molecule to Plant

Abstract

Analysis of genes controlling flowering time (heading date) contributes to our understanding of fundamental principles of plant development and is of practical importance because of the effects of flowering time on plant adaptation and crop yield. This review discusses the extent to which plants may share common genetic mechanisms for the control of flowering time and the implications of such conservation for gene isolation from the major cereal crops. Gene isolation may exploit the small genome of rice in map-based approaches, utilizing the conservation of gene order that is revealed when common DNA markers are mapped in different species. Alternatively, mechanisms may be conserved within plants as a whole, in which case genes cloned from the model dicot Arabidopsis thaliana provide an alternative route.

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References

  1. Backes G, Graner A, Foroughi-Weir B, Fischbeck G, Wenzel G, Jahoor A: Localization of quantitative trait loci (QTL) for agronomic important characters by the use of a RFLP map in barley (Hordeum vulgare L.). Theor Appl Genet 90: 294–302 (1995).

    Article  CAS  Google Scholar 

  2. Bensen RJ, Johal GS, Crane VC, Tossberg JT, Schnable PS, Meeley RB, Briggs SP: Cloning and characterization of the maize Anl gene. Plant Cell 7: 75–84 (1995).

    PubMed  CAS  Google Scholar 

  3. Bennetzen JL, Freeling M: Grasses as a single genetic system: genome analysis, colinearity and compatibility. Trends Genet 9: 259–261 (1993).

    Article  PubMed  CAS  Google Scholar 

  4. Bezant JH, Laurie DA, Pratchett N, Chojecki J, Kearsey MJ: Marker regression mapping of QTL controlling flowering time and plant height in a spring barley (Hordeum vulgare L.) cross. Heredity 77: 64–73 (1996).

    Article  CAS  Google Scholar 

  5. Burn JE, Bagnall DJ, Metzger JD, Dennis ES, Peacock WJ: DNA methylation, vernalization, and the initiation of flowering. Proc Natl Acad Sci USA 90: 287–291 (1993).

    Article  PubMed  CAS  Google Scholar 

  6. Causse M, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SB, Second GA, McCouch SR, Tanksley SD: Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251–1274 (1994).

    PubMed  CAS  Google Scholar 

  7. Chory J, Cook RK, Dixon R, Elich T, Li HM, Lopez E, Mochizuki N, Nagpal P, Pepper A, Poole D, Reed J: Signal-transduction pathways controlling light-regulated development in Arabidopsis. Phil Trans R Soc Lond B 350: 59–65 (1995).

    Article  CAS  Google Scholar 

  8. Collinson ST, Ellis RH, Summerfield RJ, Roberts EH: Durations of the photoperiod-sensitive and photoperiod-insensitive phases of development to flowering in four cultivars of rice (Orzya sativa L.). Ann Bot 70: 339–346 (1992).

    Google Scholar 

  9. Coupland G: Regulation of flowering time: Arabidopsis as a model system to study genes that promote or delay flowering. Phil Trans R Soc Lond B 350: 27–34 (1995).

    Article  CAS  Google Scholar 

  10. Dennis ES, Finnegan EJ, Bilodeau P, Chaudhury A, Genger R, Helliwell CA, Sheldon CC, Bagnall DJ, Peacock WJ: Vernalization and the initiation of flowering. Semin Cell Devel Biol 7: 441–448 (1996).

    Article  CAS  Google Scholar 

  11. Devos KM, Gale MD: The genetic maps of wheat and their potential in plant breeding. Outlook Agric 22: 93–99 (1993).

    Google Scholar 

  12. Devos KM, Chao S, Li QY, Simonetti MC, Gale MD: Relationship between chromosome 9 of maize and wheat homoeologous group 7 chromosomes. Genetics 138: 1287–1292 (1994).

    PubMed  CAS  Google Scholar 

  13. Devos KM, Dubcovsky J, Dvorak J, Chinoy CN, Gale MD: Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination. Theor Appl Genet 91: 282–288 (1995).

    Article  CAS  Google Scholar 

  14. Dubcovsky J, Luo MC, Zhong GY, Bransteitter R, Desai A, Kilian A, Kleinhofs A, Dvorak J: Genetic map of diploid wheat, Triticum anonococcuna L., and its comparison with maps of Hordeum vulgare L. Genetics 143: 983–999 (1996).

    PubMed  CAS  Google Scholar 

  15. Dunford RP, Kurata N, Laurie DA, Money TA, Minobe Y, Moore G: Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae. Nucl Acids Res 23: 2724–2728 (1995).

    Article  PubMed  CAS  Google Scholar 

  16. Ellis RH, Summerfield RJ, Edmeades GO, Roberts EH: Photoperiod, leaf number, and interval from tassel initiation to emergence in diverse cultivars of maize. Crop Sci 32: 398–403 (1992).

    Article  Google Scholar 

  17. Ellis RH, Summerfield RJ, Edmeades GO, Roberts EH: Photoperiod, temperature, and the interval from sowing to tassel initiation in diverse cultivars of maize. Crop Sci 32: 1225–1232 (1992).

    Article  Google Scholar 

  18. Fischer A, Baum N, Saedler H, Theissen G: Chromosomal mapping of the MADS-box multigene family in Zea mays reveals dispersed distribution of allelic genes as well as transposed copies. Nucl Acids Res 23: 1901–1911 (1995).

    Article  PubMed  CAS  Google Scholar 

  19. Foster KR, Miller FR, Childs KL, Morgan PW: Genetic regulation of development in Sorghum bicolor. VIII. Shoot growth, tillering, flowering, gibberellin biosynthesis, and phytochrome levels are differentially affected by dosage of the ma 3 R allele. Plant Physiol 105: 941–948 (1994).

    PubMed  CAS  Google Scholar 

  20. Gallagher LW, Soliman KM, Vivar H: Interactions among loci conferring photoperiod insensitivity for heading time in spring barley. Crop Sci 31: 256–261 (1991).

    Article  Google Scholar 

  21. Galiba G, Quarrie SA, Sutka J, Morgounov A, Snape JW: RFLP mapping of the vernalization (Vrnl) and frost resistance (Fr]) genes on chromosome 5A of wheat. Theor Appl Genet 90: 1174–1179 (1995).

    Article  CAS  Google Scholar 

  22. Hayes PM, Liu BH, Knapp SJ, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich SE, Wesen-berg D, Kleinhofs A: Quantitative trait locus effects and environmental interaction in a sample of North American barley germ plasm. Theor Appl Genet 87: 392–401 (1993).

    Article  Google Scholar 

  23. Hicks K, Sund$s A, Meeks-Wagner DR: Arabidopsis early-flowering mutants reveal multiple levels of regulation in the vegetative-to-floral transition. Semin Cell Devel Biol 7: 409–418 (1996).

    Article  Google Scholar 

  24. Hu J, Anderson B, Wessler SR: Isolation and characterization of rice R genes: evidence for distinct evolutionary paths in rice and maize. Genetics 142: 1021–1031 (1996).

    PubMed  CAS  Google Scholar 

  25. Kilian A, Kudrna DA, Kleinhofs A, Yano M, Kurata N, Steffenson B, Sasaki T: Rice-barley synteny and its application to saturation mapping of the barley Rpgl region. Noel Acids Res 23: 2729–2733 (1995).

    Article  CAS  Google Scholar 

  26. Koester RP, Sisco PH, Stuber CW: Identification of quantitative trait loci controlling days to flowering and plant height in two near isogenic lines of maize. Crop Sci 33: 1209–1216 (1993).

    Article  Google Scholar 

  27. Kurata N, Moore G, Nagamura Y, Foote T, Yano M, Minobe Y, Gale MD: Conservation of genome structure between rice and wheat. Bio/technology 12: 276–278 (1994).

    Article  CAS  Google Scholar 

  28. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang ZX, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y: A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genetics 8: 365–372 (1994).

    Article  PubMed  CAS  Google Scholar 

  29. Lagercrantz U, Putterill J, Coupland G, Lydiate D: Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time. Plant J 9: 13–20 (1996).

    Article  PubMed  CAS  Google Scholar 

  30. Laurie DA, Pratchett N, Bezant JH, Snape JW: Genetic analysis of a photoperiod response gene on the short arm of chromosome 2(2H) of barley (Hordeum vulgare L.). Heredity 72: 619–627 (1994).

    Article  CAS  Google Scholar 

  31. Laurie DA, Pratchett N, Bezant JH, Snape JW: RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross. Genome 38: 575–585 (1995).

    Article  PubMed  CAS  Google Scholar 

  32. Law CN, Dean C, Coupland G: Genes controlling flowering and strategies for their isolation and characterization. In: Jordan BR (ed) The Molecular Biology of Flowering, pp. 47–68. ed. CAB International, Oxford (1993).

    Google Scholar 

  33. Li Z, Pinson SRM, Stansel JW, Park WD: Identification of quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.). Theor Appl Genet 91: 374–381 (1995).

    CAS  Google Scholar 

  34. Lin YR, Schertz KF, Paterson AH: Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics 141: 391–411 (1995).

    PubMed  CAS  Google Scholar 

  35. Martinez-Zapater JM, Coupland G, Dean C, Koorneef M: The transition to flowering in Arabidopsis. In: Meyerowitz EM, Somerville CR (eds) Arabidopsis, pp. 403–433. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1994).

    Google Scholar 

  36. Millar AJ, Straume M, Chory J, Chua NH, Kay SA: The regulation of circadian period by phototransduction pathways in Arabidopsis. Science 267: 1163–1166 (1995).

    Article  PubMed  CAS  Google Scholar 

  37. Moore G, Gale MD, Kurata N, Flavell RB: Molecular analysis of small grain cereal genomes: current status and prospects. Bio/technology 11: 584–589 (1993).

    Article  CAS  Google Scholar 

  38. Moore G, Devos KM, Wang Z, Gale MD: Grasses, line up and form a circle. Curr Biol 5: 737–739 (1995).

    CAS  Google Scholar 

  39. Murray EE, Lotzer J, Eberle M: Codon usage in plant genes. Nucl Acids Res 17: 477–498 (1989).

    Article  PubMed  CAS  Google Scholar 

  40. Nelson JC, Sorrells ME, Van Deynze AE, Lu YH, Atkinson M, Bernard M, Leroy P, Faris JD, Anderson JA: Molecular mapping of wheat: major genes and rearrangements in homoeologous groups 4, 5 and 7. Genetics 141: 721–731 (1995).

    CAS  Google Scholar 

  41. Pan A, Hayes PM, Chen F, Chen THH, Blake T, Wright S, Karsai I, Bedö Z (1994) Genetic analysis of the components of winterhardiness in barley (Hordeum vulgare L.). Theor Appl Genet 89: 900–910.

    Article  CAS  Google Scholar 

  42. Paterson AH, Lin YR, Li Z, Schertz KF, Doebley JF, Pinson SRM, Liu SC, Stansel JW, Irvine JE: Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714–1718 (1995).

    Article  PubMed  CAS  Google Scholar 

  43. Peeters AJM, Koorneef M: Genetic variation in flowering time in Arabidopsis thaliana. Semin Cell Devel Blob 7: 381–389 (1996).

    Article  CAS  Google Scholar 

  44. Plaschke J, Börner A, Xie DX, Koebner RMD, Schlegel R, Gale MD: RFLP mapping of genes affecting plant height and growth habit in rye. Theor Appl Genet 85: 1049–1054 (1993).

    Article  CAS  Google Scholar 

  45. Poonyarit M, Mackin DJ, Vergara BS: Genetics of photoperiod sensitivity and critical daylength in rice. Crop Sci 29: 647–652 (1989).

    Article  Google Scholar 

  46. Putterill J, Robson F, Lee K, Simon R, Coupland G: The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80: 847–858 (1995).

    Article  PubMed  CAS  Google Scholar 

  47. Qi X, Stam P, Lindhout P: Comparison and integration of four barley genetic maps. Genome 39: 379–394 (1996).

    Article  PubMed  CAS  Google Scholar 

  48. Roberts EH, Summerfield RJ, Cooper JP, Ellis RH: Environmental control of flowering in barley (Hordeum vulgare L.). I. Photoperiod limits to long-day responses, photoperiodinsensitive phases and effects of low-temperature and short-day vernalization. Ann Bot 62: 127–144 (1988).

    Google Scholar 

  49. Robertson DS: A possible technique for isolating genic DNA for quantitative traits in plants. J Theor Biol 117: 1–10 (1985).

    Article  CAS  Google Scholar 

  50. Saghai Maroof MA, Yang GP, Biyashev RM, Maughan PJ, Zhang Q: Analysis of the barley and rice genomes by comparative RFLP linkage mapping. Theor Appl Genet 92: 541–551 (1996).

    Article  CAS  Google Scholar 

  51. Sasaki T, Yano M, Kurata N, Yamamoto K: The Japanese Rice Genome research program. Genome Res 6: 661–666 (1996).

    Article  PubMed  CAS  Google Scholar 

  52. Schmidt RI, Veit B, Mandel MA, Mena M, Hake S, Yanofsky MF: Identification and molecular characterization of ZAG], the maize homologue of the Arabidopsis floral homeotic gene AGAMOUS. Plant Cell 5: 729–737 (1993).

    PubMed  CAS  Google Scholar 

  53. Simon R, Coupland G: Arabidopsis genes that regulate flowering time in response to day-length. Semin Cell Devel Biol 7: 419–425 (1996).

    Article  Google Scholar 

  54. Snape JW, Quarrie SA, Laurie DA: Comparative mapping and its use for the genetic analysis of agronomic characters in wheat. Euphytica 89: 27–31 (1996).

    Article  CAS  Google Scholar 

  55. Takahashi R, Yasuda S: Genetics of earliness and growth habit in barley. In: Nilan RA (ed) Proceedings Proc 2nd International Barley Genetics Symposium, pp. 388–408. Washington State University Press (1971).

    Google Scholar 

  56. Tanksley SD, Ganal MW, Martin GB: Chromosome landing: a paradigm for map-based cloning in plants with large genomes. Trends Genet 11: 63–68 (1995).

    Article  PubMed  CAS  Google Scholar 

  57. Theissen G, Saedler H: MADS-box genes in plant ontogeny and phylogeny: Haeckel’s `biogenetic law’ revisited. Curr Opin Genet Devel 5: 628–639 (1995).

    Article  CAS  Google Scholar 

  58. Theissen G, Strater T, Fischer A, Saedler H: Structural characterization, chromosomal localization and phylogenetic evaluation of two pairs of AGAMOUS-like MADS-box genes from maize. Gene 156: 155–166 (1995).

    Article  PubMed  CAS  Google Scholar 

  59. Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME: Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248: 744–754 (1995).

    Article  PubMed  Google Scholar 

  60. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M: AFLP: a new technique for DNA fingerprinting. Nucl Acids Res 23: 4407–4414 (1995).

    Article  PubMed  CAS  Google Scholar 

  61. Wilson A, Dean C: Analysis of the molecular basis of vernalization in Arabidopsis thaliana. Semin Cell Devel Biol 7: 435–440 (1996).

    Article  CAS  Google Scholar 

  62. Worland AJ: The influence of flowering time genes on environmental adaptibility in European wheats. Euphytica 89: 49–57 (1996).

    Article  Google Scholar 

  63. Worland AJ, Bömer A, Korzun V, Li MW, Petrović S, Sayers EJ: The influence of photoperiod genes to the adaptibility of European winter wheats. Proceedings 5th International Wheat Conference, Ankara, Turkey, 1996 (in press).

    Google Scholar 

  64. Yano M, Hanishima Y, Nagamura Y, Kurata N, Sasaki T, Minobe Y: QTL analysis as an aid to tagging genes conferring heading date in rice. Proceedings 3rd International Rice Genetics Symposium, International Rice Research Institute, Manila (in press).

    Google Scholar 

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Takuji Sasaki Graham Moore

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Laurie, D.A. (1997). Comparative genetics of flowering time. In: Sasaki, T., Moore, G. (eds) Oryza: From Molecule to Plant. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-5794-0_16

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  • DOI: https://doi.org/10.1007/978-94-011-5794-0_16

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