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Pyrimidine Nucleobases as Versatile and Multidentate Ligands for Heavy Metal Ions. Significance of Metal Binding to the C(5) Sites of Uracil and Cytosine

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Cytotoxic, Mutagenic and Carcinogenic Potential of Heavy Metals Related to Human Environment

Part of the book series: NATO ASI Series ((ASEN2,volume 26))

Abstract

The N(7) positions of the purine nucleobases guanine and adenine are frequently the principal binding sites for heavy metal ions in double-stranded nucleic acids [1]. These sites are located in the major groove of DNA and therefore are well accessible. For example, the antitumor agent Cisplatin preferentially coordinates to these positions [2, 3]. With denatured nucleic acids, single-stranded oligonucleotides and isolated nucleobases, many more metal binding patterns exist [4]. On the other hand, metal binding to non- purine sites can also occur in paired nucleic acids, examples being Hg(II) (C(5) of uracil or cytosine [5]; N(3) of thymine [6]) or Pb(II) (N(3) of cytosine and 0(4) of uracil) [7]. Even Pt(II), under certain circumstances, can switch from guanine-N(7) to cytosine-N(3)

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References

  1. Martin, R.B. (1996) Dichotomy of Metal Ion Binding to Nl and N7 of Purines, Metal Ions Biol. Syst., 32, 61–89.

    CAS  Google Scholar 

  2. Lippett, B. (1989) Platinum Nucleobase Chemistry, Prog. Inorg. Chem. 37, 1–97.

    Article  Google Scholar 

  3. Reedijk, J. (1996) Improved Understanding in Platinum Antitumor Chemistry, J. Chem. Soc., Chem. Comm. 801–806.

    Google Scholar 

  4. (a) Lusty, J.R. (1990) Handbook of Nucleobase Complexes, Vol. I, CRC Press, Boca Raton, (b) Lusty, J.R., Wearden, P., and Moreno, V. (1992) Handbook of Nucleobase Complexes, Vol. II, CRC Press, Boca Raton.

    Google Scholar 

  5. Dale, R.M.K., Martin, E., Livingston, D.C., and Ward, DC. (1975) Direct Covalent Mercunation of Nucleotides and Polynucleotides, Biochemistry, 14, 2447–2457.

    Article  CAS  Google Scholar 

  6. Fnφystein, N. A., and Sletten, E. (1994) Interaction of Hg(II) with the DNA Dodecarmer (GCGAATTCGCG), a 1H-and 15N-NMR Study, J. Am. Chem. Soc, 116, 3240–3250.

    Article  Google Scholar 

  7. Brown, R.S., Hingerty, B.E., Dewan, J.C, and Klug, A. (1983) Pb(II)-catalysed cleavage of the sugar-phosphate backbone of yeast tRNAphe-implications for lead toxicity and self-splicing RNA, Nature, 303, 543–546.

    Article  CAS  Google Scholar 

  8. (a) Comess, K.M., Costetlo, C.E., and Lippard, S.J. (1990) Identification and Characterization of a Novel Linkage Isomerization in the Reaction of trans-Diamminedichloroplatinum(II) with 5′-d(TCTACGCGTTCT), Biochemistry, 29, 2102–2110. (b) Dalbies, R., Payet, D., and Leng, M. (1994) DNA double helix promotes a linkage isomerization reaction in trans-diamminedichloroplatinum(II)-modified DNA, Proc. Natl. Acad. Sci. USA, 91, 8147-8151.

    Article  CAS  Google Scholar 

  9. Bergstrom, D.E., Ruth, J.L., and Warwick, P. (1981) C5-Substituted Pyrimidine Nucleosides. 3. Reaction of Allylic Chlorides, Alcohols, and Acetates with Pyrimidine Nucleoside Derived Organopalladium Intermediates, J. Org. Chem., 46, 1432–1441.

    Article  CAS  Google Scholar 

  10. De Clercq, E. (1985) in Approaches to Antiviral Agents, M.R. Harnden ed., VCH, Great Britain.

    Google Scholar 

  11. Robertson, M.P., and Miller, S.L. (1995) Prebiotic Synthesis of 5-Substituted Uracils-a Bridge between the RNA World and the DNA-Protein World, Science, 268, 702–705.

    Article  CAS  Google Scholar 

  12. Mansy, S., and Tobias, R.S. (1975) Nature of the Reaction between Mercury(II) and Undine or Thymidine. Vibrational Spectroscopy Studies on Binding to N(3), C(4)=O, and C(5) of the Uracil Base, Inorg. Chem. 14, 287.

    Google Scholar 

  13. (c) Wrocynski, P., Kujawa, A., and Skulski, L. (1985) Iodo-and Chlorodemercuration of 5, 5′-Mercunbisuracils, Chem. Heterocl. Comp. 21, 323–325. (b) Skulski, L., Kujawa, A., and Kujaba, T. M. (1987) Halodemercuration Reactions of the 1, 3-Dimethyluracil and 1-Methyuracil 5-Substituted Mercunals, Bull. Pol. Acad. Sci. Chem., 35, 499-505.

    Google Scholar 

  14. Schöllhorn, H., Thewalt, U., and Lippert, B. (1986) Pt(III) Coordination through C5 of 1-Methyluracil: The First Example of a Pt-Nucleobase Complex Containing a Pt-C Bond, J. Chem. Soc., Chem. Comm., 258–260.

    Google Scholar 

  15. Toma, P.H., Dalla Riva Toma, J.M., and Bergstrom, D.E. (1993) Structure of 5-Chloromercuno-2-deoxyuridine, Acta Crystallogr. C49, 2047–2049.

    Google Scholar 

  16. Höpp, M., Erxleben, A., Rombeck, I., and Lippert, B. (19%) The Uracil C(5) Position as a Metal Binding Site: Solution and X-ray Crystal Structure Studies of PtII and HgII Compounds, Inorg. Chem, 35, 397–403.

    Article  Google Scholar 

  17. Zamora, F., Sabat, M., and Lippert, B. (1996) (l, 3-Dimethyl-5-yl)mercury(II): Preparative, Structural and NMR Spectroscopic Studies of an Analogue of CH3Hg(II). Inorg. Chem., in press.

    Google Scholar 

  18. Micklitz, W., Lippert, B., Lianza, F., and Albinati, A. (1994) Simultaneous binding of soft and hard metals to a pyrimidine nucleobase: preparation and X-ray structure of [(en)Pd(1-MeT)2Na2](NO3)2H2O (l-MeT= 1-methylthymine anion), Inorg. Chim. Acta, 111, 5–10.

    Article  Google Scholar 

  19. (a) Prizant, L., Rivest, R., and Beauchamp, A.L. (1981) Complexes of methylmercury(II) with 1-methylcytosine and crystal structure of n-(l-methylcytosinato-N3, N4)bis(methylmercury(II)) nitrate, Can. J. Chem. 59, 2290–2297. (b) Guay, F., and Beauchamp, A.L. (1982) Role of the Carbonyl Groups in the N3-coordinated Thymine Ring. Crystal Structure of (1-Methylthyminato) methylmercury(II) Hemihydrate and its Mixed Compound with Sodium Nitrate, Inorg. Chim. Acta 66, 57-63.

    Article  CAS  Google Scholar 

  20. Schöllhorn, H., Thewalt, U., and Lippert, B. (1989) Metal-Stabilized Rare Tauto-mers of Nucleobases. 2. 2-Oxo-4-hydroxo Form of Uracil: Crystal Structures and Solution Behavior of Two Platinum(II) Complexes Containing Iminol Tautomers of 1-Methyluracil, J. Am. Chem. Soc., 111, 7213–7221.

    Article  Google Scholar 

  21. Krizanovic, O., Sabat, M., Beyerle-Pfnür, R., and Lippert, B. (1993) Metal-Modified Nucleobase Pairs: Mixed Adenine, Thymine Complexes of trans-a2Pt (a= NH3, CH3NH2) with Watson-Crick and Hoogsteen Orientations of the Bases, J. Am. Chem. Soc, 115, 5538–5548.

    Article  CAS  Google Scholar 

  22. Schöllhorn, H., Thewalt, U., and Lippert, B. (1984) 1-Methyluracil (Hmeu) as a Tetradentate Ligand: Crystal Structure of trans-(NH3)2Pt(meu)2Ag2(NO3)(H2O)H2O, J. Chem. Soc., Chem. Comm., 769–770.

    Google Scholar 

  23. Guay, F., and Beauchamp, A.L. (1985) Preparation, Infrared Spectra, and Crystal Structure of Two Modifications of the (thymidinato-N3)methylmercury(II), Can. J. Chem. 63, 3456–3463.

    Article  CAS  Google Scholar 

  24. Canty, S., and Tobias, R.S. (1980) Synthesis and Structure of Methylmercury(II) Complexes of 9-Methylguanine, including the X-Ray Stuctural Analysis of (9-Methylguanine)methylmercury(II) Nitrate. J. Chem. Soc, Dalton Trans. 1693–1697.

    Google Scholar 

  25. (a) Zhang, S., and Shepherd, R.E. (1989)η2-1, 3-Dimethyluracil Complexes of Pentaammineruthenium(II) and Pentaammineosmium(II). Inorg. Chim. Acta, 163, 237–243. (b) Zhang, S., Holl, L.A., and Shepherd, R.E. (1990) η2 Coordination of RuII (hedta) at C-5-C-6 Bonds of Cytidine and Undine. Inorg. Chem., 29, 1012-1022. (c) Shepherd, R.E., Zhang, S., Lin, F.-T., and Kortes, R.A. (1992) Influence of 5-Substituent of Uracils and Undines on η2 Coordination of RuII (hedta) at C-5-C-6 Bonds. Inorg. Chem., 31, 1457-1462.

    Article  CAS  Google Scholar 

  26. Mealli, C., Pichierri, F., Randaccio, L., Zangrando, E., Krumm, M., Holthennch, D., and Lippert, B. (1995) Theoretical Aspects of the Heteronuclear Dimers with the T over Square Structural Motif. Synthesis and Structure of a Heteronuclear Platinum and Palladium Complex with 1-Methylcytosinato Bridging Ligands, Inorg. Chem., 34, 3418–3424.

    Article  CAS  Google Scholar 

  27. Krumm, M., Zangrando, E., Randaccio, L., Menzer, S., and Lippert, B. (1993) Strong Metal-Metal Bonds between of trans-(amine)2Pt and-Pd in Heteronuclear Complexes of Cytosine Nucleobases: Preparation, X-ray Structures, and NMR Spectroscopy, Inorg. Chem., 32, 700–712.

    Article  CAS  Google Scholar 

  28. Fusch, G., Fusch, E.C., Erxleben, A., Hüttermann, J., Scholl, H., and Lippert, B. (1996) Heteronuclear μ-1-methylcytosinato, N3, N4 complexes containing very short Pt→Cu dative bonds, Inorg. Chim. Acta, in press.

    Google Scholar 

  29. Krumm, M., Zangrando, E., Randaccio, L., Menzer, S., Danzmann, A., Holthenrich, D., and Lippert, B. (1993) Mixed Platinum(II)-Mercury(II) Cytosine Nucleobase Complexes with Metal-Metal Bonds, Inorg. Chem., 32, 2183–2189.

    Article  CAS  Google Scholar 

  30. Holthenrich, D., Krumm, M., Zangrando, E., Pichierri, F., Randaccio, L., and Lippert, B. (1995) Cytosine Nucleobase as a Tridentate Ligand: Metal Binding to N(3), N(4) and O(4) in trans-(NH2Me)2Pt(dmcyt)2Ag2][NO3]2(dmcyt= 1, 5-dimethylcytosinate), J. Chem. Soc, Dalton Trans. 3275–3279.

    Google Scholar 

  31. Amo-Ochoa, P., Freisinger, E., and Lippert, B., to be published.

    Google Scholar 

  32. Rauter, H., Hillgeris, E.C., Erxleben, A., and Lippert, B. (1994) [enPt(uracilate)]4 4+: A Metal Analogue of Calix[4]arene. Similarities and Differences with Classical Calix[4]arenes, J. Am. Chem. Soc, 116, 616–624.

    Article  CAS  Google Scholar 

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Zamora, F., Amo-Ochoa, P., Lippert, B. (1997). Pyrimidine Nucleobases as Versatile and Multidentate Ligands for Heavy Metal Ions. Significance of Metal Binding to the C(5) Sites of Uracil and Cytosine. In: Hadjiliadis, N.D. (eds) Cytotoxic, Mutagenic and Carcinogenic Potential of Heavy Metals Related to Human Environment. NATO ASI Series, vol 26. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-5780-3_32

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  • DOI: https://doi.org/10.1007/978-94-011-5780-3_32

  • Publisher Name: Springer, Dordrecht

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