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Measurement of Amide III Vibrational Circular Dichroism of Proteins

Correlation of Spectra to Secondary Structure by Similarity Algorithm

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Spectroscopy of Biological Molecules: Modern Trends

Abstract

Empirical correlations have been made between protein vibrational circular dichroism (VCD) spectra for amide I and II modes and the fractions of secondary structure found in analyses of their X-ray crystal structure [1]. We have now studied protein VCD in another region, the amide III (primarily C-N stretch). Its measurement has proven difficult in the infrared due to its low overall absorbance intensity and to its mixing with other non-amide modes lying in the general region near 1300cm−1 [2].

This work funded by a grant from the National Institutes of Helth (GM3 1047).

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References

  1. Keiderling, T. A. (1996) in G. D. Fasman (ed.), Circular Dichroism and the Conformational Analysis of Biomolecules, Plenum Press, New York, pp. 555–598, and the references therein.

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  2. Diem, M., Oboodi, M.R., and Alva, C. (1984) Biopolymers, 23, 1917–1930.

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  3. Pancoska, P., Bitto, E., Janota, V., Urbanova, M., Gupta, V. P., Keiderling, T.A. (1995) Protein Sci., 4, 1384–1401.

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  4. Baumruk, V., Pancoska, P., and Keiderling, T.A. (1996) J. Mol Biol., 259, 774–791.

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© 1997 Springer Science+Business Media Dordrecht

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Baello, B.I., Pancoska, P., Keiderling, T.A. (1997). Measurement of Amide III Vibrational Circular Dichroism of Proteins. In: Carmona, P., Navarro, R., Hernanz, A. (eds) Spectroscopy of Biological Molecules: Modern Trends. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-5622-6_11

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  • DOI: https://doi.org/10.1007/978-94-011-5622-6_11

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-6369-2

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