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Techniques for Exploring Symbiosis-Specific Gene Expression in Cnidarian/Algal Associations

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Abstract

Symbiotic associations between two or more unrelated organisms encompass a spectrum of lifestyles from mutuahstic to parasitic and from extracellular to intracellular (Smith and Douglas, 1987). These relationships are prevalent in all ecosystems, including those in the ocean. Indeed, the majority of primary and secondary production in both coral reefs and deep-sea hydrothermal vent ecosystems comes from endosymbioses, associations involving a larger host organism that harbors a smaller symbiont(s) within its tissues or cells (Mann, 1982; Childress and Fisher, 1992). Although a great deal is known about many marine endosymbiotic associations at the evolutionary, ecological, morphological and even physiological levels, relatively little is known about them at the cellular, biochemical and molecular levels. The complex signaling and regulation that must occur during the initiation, establishment and maintenance of these endosymbioses remain largely unexplored.

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References

  • Abshire, K.Z. and Neidhardt, F.C. (1993) Analysis of proteins synthesized by Salmonella typhimurium during growth within a host macrophage. Journal of Bacteriology, 175, 3734–43.

    PubMed  CAS  Google Scholar 

  • Akopian, A.N. and Wood, J.N. (1995) Peripheral nervous system-specific genes identified by subtractive cDNA cloning. Journal of Biological Chemistry, 270(36), 21264–70.

    Article  PubMed  CAS  Google Scholar 

  • Bauer, D., Muller, H., Reich, J. et al. (1993) Identification of differentially expressed mRNA species by an improved display technique (DDRT-PCR). Nucleic Acids Research, 21, 4272–80.

    Article  PubMed  CAS  Google Scholar 

  • Bjourson, A.J. and Cooper, J.E. (1996) Subtraction hybridization for the isolation of strain-specific Khizobium DNA probes, in Methods in Molecular Biology, Vol. 50 (ed. J.P. Clapp), Humana Press, Totwa, NJ, pp. 145–54.

    Google Scholar 

  • Buchmeier, N. and Heffron, F. (1990) Induction of Salmonella stress proteins upon infection of macrophages. Science, 248, 730–2.

    Article  PubMed  CAS  Google Scholar 

  • Callard, D., Lescure, B. and Mazzolini, L. (1994) A method for the elimination of false positives generated by the mRNA differential display technique. Biotechniques, 16(6), 1096–103.

    PubMed  CAS  Google Scholar 

  • Childress, J.J. and Fisher, C.R. (1992) The biology of hydrothermal vent animals: Physiology, biochemistry, and autotrophic symbioses. Oceanographic Marine Biology Annual Review, 30, 337–441.

    Google Scholar 

  • Chomczynski, P. and Sacchi, R. (1987) Single-step method of RNA isolation by add guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry, 162, 156–9.

    Article  PubMed  CAS  Google Scholar 

  • Coffroth, M.A. and Mulawka, J.M. (1995) Identification of marine invertebrate larvae by means of PCR-RAPD spedes-spedfic markers. Limnology and Oceanography, 40, 181–9.

    Article  CAS  Google Scholar 

  • Coffroth, MA., Lasker, H., Diamond, M.E. et al. (1992) DNA fingerprinting of a gorgonian coral: A method for detecting donal structure in a vegetative species. Marine Biology, 114, 317–25.

    Article  CAS  Google Scholar 

  • Cook, D., Dreyer, D., Bonnet, D. et al. (1995) Transient induction of a peroxidase gene in Medicago truncatula precedes infection by Khizobium meliloti. Plant Cell, 7(1), 43–55.

    PubMed  CAS  Google Scholar 

  • Darbre, A. (ed.) (1986) Practical Guide to Protein Chemistry: A Handbook, Wiley, New York.

    Google Scholar 

  • Davis, M.M., Cohen, D.I., Nielsen, E.A. et al. (1984) Cell-type-specific cDNA probes and the murine I region: The localization and orientation of Aα. Proceedings of the National Academy of Sciences of the USA, 81, 2194–8.

    Article  PubMed  CAS  Google Scholar 

  • Distel, D.L., Lee, H.H.-W. and Cavanaugh, C.M. (1995) Intracellular coexistence of methano-and thioautotrophic bacteria in a hydrothermal vent mussel. Proceedings of the National Academy of Sciences of the USA, 92(21), 9598–602.

    Article  PubMed  CAS  Google Scholar 

  • Dykens, J.A. and Shick, J.M. (1982) Oxygen production by endosymbiotic algae controls Superoxide dismutase activity in their animal host. Nature, 297, 579–80.

    Article  CAS  Google Scholar 

  • Dykens, J.A. and Shick, J.M. (1984) Photobiology of the symbiotic sea anemone, Anihopleura elegantissima: defenses against photodynamic effects, and seasonal photoacclimatization. Biological Bulletin, 167, 683–97.

    Article  CAS  Google Scholar 

  • Dykens, J.A, Shick, J.M., Benoit, C. et al. (1992) Oxygen radical production in the sea anemone Anthropleura elegantissima and its endosymbiotic algae. Journal of Experimental Biology, 168, 219–41.

    CAS  Google Scholar 

  • Falkowski, P.G., Dubinsky, Z. and Muscatine, L. (1984) light and bioenergetics of a symbiotic coral. BioScience, 34, 705–9.

    Article  CAS  Google Scholar 

  • Gates, R.D., Hoegh-Guldberg, O., McFall-Ngai, M.J. et al. (1995) Free amino acids exhibit anthozoan ‘host factor’ activity: They induce the release of photosynthate from symbiotic dinoflagellates in vitro. Proceedings of the National Academy of Sciences of the USA, 92, 7430–4.

    Article  PubMed  CAS  Google Scholar 

  • Govers, F., Gloudemans, T., Moerman, M. et al. (1985) Expression of plant genes during development of pea root nodules. European Molecular Biology Journal, 4, 861–7.

    CAS  Google Scholar 

  • Hedrick, S.M., Cohen, D.I., Nielsen, E.A. and Davis, M.M. (1984) Isolation of cDNA clones encoding T cell-specific membrane-associated proteins. Nature, 308, 149–53.

    Article  PubMed  CAS  Google Scholar 

  • Jackson, A.E. and Yellowlees, D. (1990) Phosphate uptake by zooxanthellae isolated from corals. Proceedings of the Royal Society of London B, 242, 201–4.

    Article  Google Scholar 

  • Kouchi, H. and Hata, S. (1993) Isolation and characterization of novel nodulin cDNAS representing genes expressed at early stages of soybean nodule development. Molecular and General Genetics, 238(1-2), 106–19.

    PubMed  CAS  Google Scholar 

  • Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680–5.

    Article  PubMed  CAS  Google Scholar 

  • Legocki, R.P. and Verma, D. (1980) Identification of ‘nodule-specific’ host proteins (nodulins) involved in the development of Rhizobium-legume symbiosis. Cell, 20, 153–63

    Article  PubMed  CAS  Google Scholar 

  • Lesser, M.P. and Shick, J.M. (1989) Effects of irradiance and ultraviolet radiation on photoadapta tion in the zooxanthellae of Aiptasia pallida: Primary production, photoinhibition, and enzymic defenses against oxygen toxicity. Marine Biology, 102, 243–55.

    Article  Google Scholar 

  • Lesser, M.P., Weis, V.M., Patterson, M.R. and Jokiel, P.L. (1994) Effects of morphology and water motion on carbon delivery and productivity in the reef coral Pocillopora damicornis (Linnaeus): Diffusion barriers, inorganic carbon limitation, and biochemical plasticity. Journal of Experimental Marine Biology and Ecology, 178, 153–79.

    Article  CAS  Google Scholar 

  • Li, W.-H. and Graur, D. (1991) Molecular Evolution, Sinauer Associates, Sunderland, MA.

    Google Scholar 

  • Liang, P. and Pardee, A.B. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science, 257, 967–71.

    Article  PubMed  CAS  Google Scholar 

  • Liang, P., Averboukh, L. and Pardee, A.B. (1993) Distribution and cloning of eukaryotic mRNAs by means of differential display: refinements and optimization. Nucleic Acids Research, 21(14), 3269–75.

    Article  PubMed  CAS  Google Scholar 

  • McMillan, J., Yellowlees, D., Heyward, A. et al. (1988) Preparation of high molecular weight DNA from hermatypic corals and its use for DNA hybridization and cloning. Marine Biology, 98, 271–6.

    Article  CAS  Google Scholar 

  • Mann, K.H. (1982) Coral reefs, in Ecology of Coastal Waters: A Systems Approach, Chapter 6, Blackwell Scientific, Oxford, pp. 160–82.

    Google Scholar 

  • Markell, D.A. and Trench, R.K. (1993) Macromolecules exuded by symbiotic dinoflagellates in culture: Amino acid and sugar composition. Journal of Phycology, 29, 64–8.

    Article  CAS  Google Scholar 

  • Markell, D.A., Trench, R.K. and Iglesias-Prieto, R. (1992) Macromolecules associated with the cell walls of symbiotic dinoflagellates. Symbiosis, 12, 19–31.

    CAS  Google Scholar 

  • Marshak, D.R., Kadonaga, J.T., Burgess, R.R. et al. (1996) Strategies pr Protein Purification and Characterization. A laboratory Course Manual, Cold Spring Harbor Laboratory Press, Plainview, NY.

    Google Scholar 

  • O’Farrell, P.H. (1975) High resolution two dimensional electrophoresis of proteins. Journal of Biological Chemistry, 250, 4007–21.

    CAS  Google Scholar 

  • Pelham, H. and Jackson, R. (1976) An effident mRNA-dependent translation system from reticulocyte lysates. European Journal of Biochemistry, 67, 247–52.

    Article  PubMed  CAS  Google Scholar 

  • Reuber, T.L. and Ausubel, F.M. (1995) Differential mRNA display, in Methods in Cell Biology, Vol. 49 (eds D.W. Galbraith, H.J. Bohnert and D.P. Bourque), Academic Press, New York, pp. 431–40.

    Google Scholar 

  • Rowan, R. and Powers, D.A. (1991) Molecular genetic identification of symbiotic dinoflagellates (zooxanthellae). Marine Ecology Progress Series, 71, 65–73.

    Article  CAS  Google Scholar 

  • Ruby, E.G. and Morin, J. (1979) Luminous enteric bacteria of marine fishes; A study of their distribution and dispersion. Applied Environmental Microbiology, 38, 406–11.

    CAS  Google Scholar 

  • Santavy, D.L. and Colwell, R.R. (1990) Comparison of bacterial communities associated with the Caribbean sclerosponge Ceratoporella nicholsoni and ambient seawater. Marine Ecology Progress Series, 67(1), 73–82.

    Article  Google Scholar 

  • Scopes, R. (1994) Protein Purification, 3rd edn, Springer-Verlag, New York.

    Google Scholar 

  • Secord, D.L. (1995) Host specificity and symbiotic interactions in sea anemones. PhD dissertation, Department of Zoology, University of Washington, Seattle, Washington.

    Google Scholar 

  • Shick, J.M. and Dykens, J.A. (1985) Oxygen detoxification in algal-invertebrate symbioses from the Great Barrier Reef. Oecologia, 66, 33–41.

    Article  Google Scholar 

  • Sive, H.L. and St. John, T. (1988) A simple subtractive technique employing photoactivatable biotin and phenol extraction. Nucleic Acids Research, 16(22), 10937.

    Article  PubMed  CAS  Google Scholar 

  • Smith, D.C. and Douglas, A.E. (1987) The Biology of Symbiosis, Edward Arnold, London.

    Google Scholar 

  • Suganuma, N., Tamoaki, M. and Kouchi, H. (1995) Expression of nodulin genes in plant-determined ineffective nodules of pea. Plant Molecular Biology, 28, 1027–38.

    Article  PubMed  CAS  Google Scholar 

  • Swalla, B., Makabe, K., Satoh, N. and Jeffery, W. (1993) Novel genes expressed differentially in ascidians with alternate modes of development. Development, 119, 307–18.

    PubMed  CAS  Google Scholar 

  • Trench, R.K. (1987) Dinoflagellates in non-parasitic symbioses, in The Biology of Dinoflagellates (ed. F. Taylor), Blackwell Scientific, Oxford, pp. 530–70.

    Google Scholar 

  • Trench, R.K. (1993) Macroalgal-invertebrate symbioses: A review. Endocytobiology and Cell Research, 9, 135–75.

    Google Scholar 

  • Tytler, E.M. and Spencer Davies, P. (1983) A method of isolating clean and viable zooxanthellae by density gradient centrifugation. Limnology and Oceanography, 28(6), 1266–8.

    Article  Google Scholar 

  • Velculescu, V., Zhang, L,, Vogelstein, B. and Kinzler, K.W. (1995) Serial analysis of gene expression. Science, 270, 484–7.

    Article  PubMed  CAS  Google Scholar 

  • Weis, V.M. (1991) Induction of carbonic anhydrase in the symbiotic anemone Aiptasia pulchella. Biological Bulletin, 180, 496–504.

    Article  CAS  Google Scholar 

  • Weis, V.M. (1993) The effect of dissolved inorganic carbon concentration on the photosynthesis of the symbiotic sea anemone Aiptasia pulchella: Role of carbonic anhydrase. Journal of Experimental Marine Biology and Ecology, 174, 209–25.

    Article  CAS  Google Scholar 

  • Weis, V.M. and Levine, R.P. (1996) Differential protein profiles reflect the different lifestyles of symbiotic and aposymbiotic Anthopleura elegantissima, a sea anemone from temperate waters. Journal of Experimental Biology, 199, 883–92.

    PubMed  Google Scholar 

  • Weis, V.M., Smith, G.J. and Muscatine, L. (1989) A ‘CO2-supply’ mechanism in zooxanthellate cnidarians: role of carbonic anhydrase. Marine Biology, 100, 195–202.

    Article  CAS  Google Scholar 

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Weis, V.M., von Kampen, J., Levine, R.P. (1998). Techniques for Exploring Symbiosis-Specific Gene Expression in Cnidarian/Algal Associations. In: Cooksey, K.E. (eds) Molecular Approaches to the Study of the Ocean. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-4928-0_23

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  • DOI: https://doi.org/10.1007/978-94-011-4928-0_23

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