Abstract
The recent focus on microbial biodiversity has demonstrated that a wide variety of unknown fungi are present in the natural world. Microorganisms are indispensable to the global environment and to human welfare as they are essential for the turnover of organic matter and produce important bioactive compounds such as antibiotics. It is estimated that less than 10% of microorganisms have been described with those found in subtropical to tropical regions receiving scant attention. The number of microbial species, including unculturable microorganisms, is believed to be especially high in these regions which contain perhaps more than half of the species of plants and animals living on the Earth.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Banno, I. (1967). Studies on the sexuality of Rhodotorula. Journal of General and Applied Microbiology 13, 167–196.
Barr, M.E. (1987). Prodromus to Class Loculoascomycetes. Amherst, Massachusetts: Newell, Inc.
Barr, M.E. (1990). Prodromus to nonlichenized, pyrenomycetous members of class Hymenoascomycetes. Mycotaxon 39, 43–184.
Berbee, M.L. (1996). Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data. Molecular Biology and Evolution 13, 462–470.
Berbee, M.L. & Taylor, J.W. (1993). Dating the evolutionary radiations of the true fungi. Canadian Journal of Botany 71, 1114–1127.
Blanz, P.A. & Unseld, M. (1987). Ribosomal RNA as a taxonomic tool in mycology. In The Expanding Realm of Yeast-like Fungi, pp. 247–258. Edited by G.S. Hoog, M.T. Smith & A.C.M. Weijman. Amsterdam: Elsevier Science.
Boekhout, T., Fonseca, A., Sampaio, J.-P. & Golubev, W.I. (1993). Classification of heterobasidiomycetous yeasts: characteristics and affiliation of genera to higher taxa of heterobasidiomycetes. Canadian Journal of Microbiology 39, 276–290.
Boekhout, T., Fell, J.W. & O’Donnell, K. (1995). Molecular systematics of some yeast-like anamorphs belonging to the Ustilaginales and Tilletiales. Studies in Mycology 38, 175–183.
Bowen, A.R., Chen-Wu, J.L., Momany, M., Young, R., Szaniszlo, P.J. & Robbins, P.W. (1992). Classification of fungal chitin synthases. Proceedings of National Academy of Sciences of the United States of America 89, 519–523.
Bruns, T.D., White, TJ. & Taylor, J.W. (1991). Fungal molecular systematics. Annual Review of Ecological Systematics 22, 525–564.
Bruns, T.D., Vilgalis, R., Barns, S.M., Gonzalez, D., Hibbett, D.S., Lane, D.J., Simon, L., Stickel, S., Szaro, T.M. & Weinberg, W.G. (1992). Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molecular Phylogenetics and Evolution 1, 231–241.
Cavalier-Smith, T. (1987). The origin of fungi and pseudofungi. In Evolutionary Biology of the Fungi, pp. 339–353. Edited by A.D.M. Rayner, C.M. Brasier & D. Moore. Cambridge: Cambridge University Press.
Fell, J.W., Statzell-Tallman, A. & Lutz, M.J. (1992). Partial rRNA sequences in marine yeasts: a model for identification of marine eukaryotes. Molecular Marine Biology and Biotechnology 1, 175–186.
Fell, J.W., Boekhout, T. & Freshwater, D.W. (1995). The role of nucleotide sequence analysis in the systematics of the yeast genera Cryptococcus and Rhodotorula. Studies in Mycology 38, 129–147.
Fell, J.W., Roeijmans, H. & Boekhout, T. (1999). Cystofilobasidiales, a new order of basidiomycetous yeasts. International Journal of Systematic Bacteriology 49, 907–913.
Goto, S. & Sugiyama, J. (1970). Studies on Himalayan yeasts and molds (IV). Several asporogenous yeasts, including two new taxa of Cryptococcus. Canadian Journal of Botany 48, 2097–2101.
Goto, S., Sugiyama, J., Hamamoto, M. & Komagata, K. (1987). Saitoella, a new anamorph genus in the Cryptococcaceae to accommodate two Himalayan yeast isolates formerly identified as Rhodotorula glutinis. Journal of General and Applied Microbiology 33, 75–85.
Guého, E., Kurtzman, C.P. & Peterson, S.W. (1989). Evolutionary affinities of heterobasidiomycetous yeasts estimated from 18S and 25S ribosomal RNA sequence divergence. Systematics and Applied Microbiology 12, 230–236.
Hori, H. & Osawa, S. (1987). Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences. Molecular Biology and Evolution 4, 445–472.
Kahn, S.R. & Kimbrough, J.W. (1982). A reevaluation of the basidiomycetes based upon septal and basidial structures. Mycotaxon 15, 103–120.
Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111–120.
Kramer, C.L. (1973). Protomycetales and Taphrinales. In The Fungi, An Advanced Treatise, Vol. 4A, pp. 33–41. Edited by G.C. Ainsworth, F.K. Sparrow & S.A. Sussman. London: Academic Press.
Kreger-van Rij, N.J.W. (Ed.) (1984). The Yeasts, A Taxonomic Study, 3rd Edn. Amsterdam: Elsevier Science.
Kurtzman, C.P. & Robnett, C. (1991). Phylogenetic relationships among species of Saccharomyces, Schizosaccharomyces, Debaryomyces and Schwanniomyces determined from partial ribosomal RNA sequences. Yeast 7, 61–72.
Kurtzman, C.P. & Blanz, P.A. (1998). Ribosomal RNA/DNA sequence comparisons for assessing phylogenetic relationships. In The Yeasts, A Taxonomic Study, 4th Edn., pp. 69–74. Edited by C. P. Kurtzman & J. W. Fell. Amsterdam: Elsevier Science.
Kurtzman, C.P. & Fell J.W. (Eds.) (1998). The Yeasts, A Taxonomic Study, 4th Edn. Amsterdam: Elsevier Science.
Kurtzman, C.P. & Robnett, C.J. (1998). Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (265) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73, 331–371.
Luttrell, E.S. (1951). Taxonomy of the pyrenomycetes. University of Missouri Studies 3, 1–20.
McKerracher, L.J. & Health, I.B. (1985). The structure and cycle of the nucleus-associated organelle in two species of Basidiobolus. Mycologia 77, 412–417.
McLaughlin, D.J., Frieders, E.M. & Lü, H.S. (1995). A microscopist’s view of heterobasidiomycete phylogeny. Studies in Mycology 38, 91–109.
Nagahama, T., Sato, H., Shimazu, M. & Sugiyama, J. (1995). Phylogenetic divergence of the entomophthoralean fungi: evidence from nuclear 18S ribosomal RNA gene sequences. Mycologia 87, 203–209.
Nishida, H. & Sugiyama, J. (1994). Archiascomycetes: Detection of a major new lineage within the Ascomycota. Mycoscience 35, 361–366.
Nishida, H., Blanz, P.A. & Sugiyama, J. (1993). The higher fungus Protomyces inouyei has two group I introns in the 18S rRNA gene. Journal of Molecular Evolution 37, 25–28.
Nishida, H., Ando, K., Ando, Y., Hirata, A. & Sugiyama, J. (1995). Mixia osmundae: Transfer from the Ascomycota to the Basidiomycota based on evidence from molecules and morphology. Canadian Journal of Botany 73(Supplement 1), S660–S666.
O’Donnell, K.L. & McLaughlin, D.J. (1984). Ultrastructure of meiosis in Ustilago maydis. Mycologia 76, 468–485.
Prillinger, H., Dörfler, C., Laaser, G. & Hauska, G. (1990). A contribution to the systematics and evolution of higher fungi: yeast-types in the basidiomycetes. Part III: Ustilago-typc. Zeitschrift für Mykologie 56, 251–278.
Prillinger, H., Deml, G., Dörfler, C., Laaser, G. & Lockau, W. (1991a). A contribution to the systematics and evolution of higher fungi: yeast-types in the basidiomycetes. Part II: Micrvbotryum-type. Botanical Acta 104, 5–17.
Prillinger, H., Laaser, G., Dörfler, C. & Ziegler, K. (1991b). A contribution to the systematics and evolution of higher fungi: yeast-types in the basidiomycetes. Part IV: Dacrymyces-type, Tremella-type. Sydowia 43, 170–218.
Ramberg, J.E. & McLaughlin, D.J. (1980). Ultrastructural study of promycelial development and basidiospore initiation in Ustilago maydis. Canadian Journal of Botany 58, 1548–1561.
Reynolds, D.R. & Taylor, J.W. (Eds.) (1993). The Fungal Holomorph, Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics. Wallingford, UK: CAB International.
Roberson, R.W. & Luttrell, E.S. (1989). Dolipore septa in Tilletia. Mycologia 81, 650–653.
Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406–425.
Spatafora, J.W. (1995). Ascomal evolution of filamentous ascomycetes: evidence from molecular data. Canadian Journal of Botany 73(Supplement 1), S811–S815.
Sugiyama, J., Fukagawa, M., Chiu, S.-W. & Komagata, K. (1985). Cellular carbohydrate composition, DNA base composition, ubiquinone systems, and diazonium blue B color test in the genera Rhodosporidium, Leucosporidium, Rhodotorula, and related basidiomycetous yeasts. Journal of General and Applied Microbiology 31, 519–550.
Sugiyama, J., Nagahama, T. & Nishida, H. (1995). Fungal diversity and phylogeny with emphasis on 18S ribosomal DNA sequence divergence. In Microbial Diversity in Time and Space, pp. 41–51. Edited by R. Colwell, U. Simidu & K. Ohwada. New York: Plenum Press.
Suh, S.-O. & Sugiyama, J. (1993). Phylogeny among the basidiomycetous yeasts inferred from small subunit ribosomal DNA sequence. Journal of General Microbiology 139, 1595–1598.
Suh, S.-O. & Sugiyama, J. (1994). Phylogenetic placement of the basidiomycetous yeasts Kondoa malvinella and Rhodosporidium dacryoidum and the anamorphic yeast Sympodiomycopsis paphiopedili by means of 18S rRNA gene sequence analysis. Mycoscience 35, 367–375.
Suh, S.-O., Hirata, A., Sugiyama, J. & Komagata, K. (1993). Septal ultrastructure of basidiomycetous yeasts and their taxonomic implications with observations on the ultrastructure of Erythrobasidium hasegawianum and Sympodiomycopsis paphiophedili. Mycologia 85, 30–37.
Swann, E.C. & Taylor, J.W. (1993). Higher taxa of basidiomycetes: an 18S rRNA gene perspective. Mycologia 85, 923–936.
Swann, E.C. & Taylor, J.W. (1995). Phylogenetic perspectives on basidiomycete systematics: evidence from the 18S rRNA gene. Canadian Journal of Botany 73(Suppl. 1), S862–S868.
Taylor, J.W., Swann, E.C. & Berbee, M.L. (1994). Molecular evolution of ascomycete fungi: Phylogeny and conflict. In Ascomycete Systematics: Problems and Perspectives in the Nineties, pp. 201–212. Edited by D.L. Hawksworth. New York: Plenum Press.
Wells, K.W. (1994). Jelly fungi then and now. Mycologia 86, 18–48.
Wolters, J. & Erdman, V.A. (1986). Cladistic analysis of 5S rRNA and 16S rRNA secondary and primary structure-The evolution of eukaryotes and their relation to archaebacteria. Journal of Molecular Evolution 24, 152–166.
Yamada, Y., Maeda, K., Nagahama, T. & Banno, I. (1991). The phylogenetic relationships of the Q9-equipped genus Schwanniomyces Klöcker (Saccharomycetaceae) based on the partial sequences of 18S and 26S ribosomal RNAs. Journal of General and Applied Microbiology 37, 523–528.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2000 Springer Science+Business Media Dordrecht
About this chapter
Cite this chapter
Hamamoto, M., Nakase, T. (2000). Phylogenetic Relationships Among Fungi Inferred from Small Subunit Ribosomal RNA Gene Sequences. In: Priest, F.G., Goodfellow, M. (eds) Applied Microbial Systematics. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-4020-1_3
Download citation
DOI: https://doi.org/10.1007/978-94-011-4020-1_3
Publisher Name: Springer, Dordrecht
Print ISBN: 978-0-7923-6518-1
Online ISBN: 978-94-011-4020-1
eBook Packages: Springer Book Archive