Skip to main content

Algebraic Topological Indices of Molecular Chirality

  • Chapter
New Developments in Molecular Chirality

Part of the book series: Understanding Chemical Reactivity ((UCRE,volume 5))

Abstract

In this chapter we shall focus attention upon those aspects of the mathematical analysis of molecular graphs which relate to the geometric and topological properties of their spatial symmetries and of their knotting and linking. Interconnections with the theory of knots and links (which can also serve as models for small molecules) will also be presented. In this first section we shall briefly review the fundamental concepts which delineate the interrelationships between the molecular structures, the geometric structures, and the topological structures. In the second section we shall present several of the significant test families of molecular graphs which will be employed in the comparison of the stereotopological indices used to detect chirality. This discussion continues in the third section where some of the elements of the knot theory of molecular graphs are introduced. Chimerical graphs, i.e. graphs with a fixed structure near vertices, their elementary properties, and their structural properties are presented in the fourth section. In the fifth section we present a survey of the algebraic topological methods that have been employed to detect and quantify the chirality of classical knots and links as well as molecular graphs, This discussion concludes with the discussion of the development, by E. Witten, of stereotopological indices arising from interactions with, statistical mechanics and gauge theories from mathematical physics.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. J.W. Alexander, Topological invariants of knots and links, Trans. Amer. Math. Soc. 20 (1928), 275–306.

    Article  Google Scholar 

  2. R.J. Baxter, Exactly solved models in statistical mechanics, Academic Press, London, 1982.

    Google Scholar 

  3. R.D. Brandt, W.B.R. Lickorish, and K.C. Millett, A polynomial invariant for nonoriented knots and links, Invent. Math. 84, (1986), 563–573.

    Article  Google Scholar 

  4. J.H. Conway, An enumeration of knots and links and some of their algebraic properties. Computational problems in abstract algebra, (John Leech,ed.), Pergamon Press, Oxford and New York 1969, 329–358.

    Google Scholar 

  5. N.R. Cozzaralli. J. White, and K. C. Millet, Description of the topological entanglements of DNA catenanes and knots by a powerful method involving strand passage and recombination, J. Mol. Biol. (1987) 197, 585–603.

    Article  CAS  Google Scholar 

  6. C. Dietrich-Buchecker, J.-P. Sauvage. A synthetic molecular trefoil knot. Angew. Chem. Int. Ed. Engl. 28 (1989), 189–192.

    Google Scholar 

  7. E. Flapan, Rigid and non-rigid achirality, Pacific Journal of Math. 129 (1987), 57–66

    Article  Google Scholar 

  8. E. Flapan, Symmetries of knotted molecular graphs, Discrete Applied Math, Vol. 19 (1988), 157–166.

    Article  Google Scholar 

  9. E. Flapan, Symmetries of Mobius ladders, Mathematische Annalen, 283 (1989). 271–283.

    Article  Google Scholar 

  10. P. Freyd, D. Yetter; J. Hoste; W. B. R. Lickorish, K. Millett; A. Ocneanu, A new polynomial invariant for knots and links, Bulletin (New Series) of the American Mathematical Society, Vol 12, No. 2, April 1985, 239–246.

    Article  Google Scholar 

  11. H.L. Frisch and E. Wasserman, Chemical Topology, J. Am. Chem. Soc. 83 (1961), 3789–3795.

    Article  CAS  Google Scholar 

  12. V.F.R. Jones, A polynomial invariant for knots via von Neumann algebras, Bull. Am. Math Soc. 12(1985).103–111.

    Article  Google Scholar 

  13. V.F.R. Jones, Hecke algebra representations of braid groups and link polynomials. Ann. of Math. 126 (1987). 335–388.

    Article  Google Scholar 

  14. V.F.R. Jones, On knot invariants related to some statistical mechanical models, preprint 1988.

    Google Scholar 

  15. D.Jonish, K.C.Millett, Extrinsic topological chirality indices of molecular graphs (with Jonish), Graph Theory and Topology in Chemistry 51(1987), 82–90.

    CAS  Google Scholar 

  16. D. Jonish, K.C. Millett. Isotopy invariants of graphs, Lab. de Math. Marseille. n089–22, July 1989

    Google Scholar 

  17. L. Kauffman, Invariants of Graphs in three space, Trans. Amer. Math. Soc., vol. 311 (1989). 679–710.

    Article  Google Scholar 

  18. L. Kauffman. An invariant of regular isotopy. to appear in Trans. Amer. Math. Soc.

    Google Scholar 

  19. L. Kauffman, State models and the Jones polynomial. Topology, 26 (1987). 395–407.

    Article  Google Scholar 

  20. L. Kauffman and P. Vogel. Link polynomials and graphical calculus, preprint 1987.

    Google Scholar 

  21. S. Kinoshita. Elementary ideals in knot theory, Kwansei Gakuin Univ. Annual Studies. 35.

    Google Scholar 

  22. S. Kinoshita. On elemenatary ideals of polyhedra in the 3-shpere. Pac. Jour. of Math. 42 (1972), 89–98.

    Article  Google Scholar 

  23. S. Kinoshita, Alexander polynomial as isotopy invariants I. Osaka Math. J. 10(1958). 263–271.

    Google Scholar 

  24. S. Kinoshita, Alexander polynomial as isotopy invariants II, Osaka Math. J. 11(1959), 91–94.

    Google Scholar 

  25. K. Kobayashi, Reduced degree of Yamada polynomial and planarity of graphs, preprint 1987.

    Google Scholar 

  26. W.B.R. Lickorish, The panorama of polynomials for knots, links, and skeins, Proc. Artin’s Braid Group Conference, Santa Cruz (1986).

    Google Scholar 

  27. W.B.R. Lickorish, Polynomials for links, Bull. London Math. Soc. 20(1988).558–588.

    Article  Google Scholar 

  28. ] W.B.R. Lickorish and K.C. Millett, The new polynomials for knots and links, Mathematics Magazine 61 (1988), 3–23.

    Google Scholar 

  29. W.B.R. Lickorish and K.C. Millett, A polynomial invariant for oriented links, Topology 26(1987), 107–141.

    Article  Google Scholar 

  30. K.C. Millett, An invariant of 3-valent Spatial Graphs, preprint 1990.

    Google Scholar 

  31. K.C. Millett, Stereotopological indices for a family of chemical graphs, J. Comp. Chem. 8 (1987), 536–550.

    Article  CAS  Google Scholar 

  32. K.C. Millett, Configuration census, topological chirality and the new combinatorial invariants, The Proceedings of the International Symposium on Applications of Mathematical Concepts to Chemistry, Croatica Chemica Acta., Vol. 59 (3) (1986), 669–684.

    Google Scholar 

  33. S. Negami, Polynomial invariants of graphs. Trans. Amer. Math. Soc. 299 (1987), 601–622.

    Article  Google Scholar 

  34. C.D. Papakyriokopolous, On Dehn’s lemma and the asphericity of knots, Ann. of Math. 66 (1957), 1–26.

    Google Scholar 

  35. M. Scharlemann, A. Thompson, Detecting unknotted graphs in 3-space, preprint 1989

    Google Scholar 

  36. G. Schilf, Catenanes, Rotaxanes, and Knots. Academic Press, (Org. Chem. Mono. Ser., No. 22), 1971.

    Google Scholar 

  37. J. Simon, Topological chirality of certain molecules, Topology Vol. 25 (2) (1986), 229–235.

    Article  Google Scholar 

  38. ] J. Simon, Molecular graphs as topological objects in space. J. Comp. Chem. 8 (1987), 718–726.

    Article  CAS  Google Scholar 

  39. J. Simon, K. Wolcott, Minimally knotted graphs in S3, preprint 1989

    Google Scholar 

  40. V. I. Sokolov, Topological ideas in stereochemistry, Russian Chemical Reviews 42(6), (1973), 452–463.

    Article  Google Scholar 

  41. D. W. Sumners, Knots, macromolecules and chemical dynamics, Graph Theory and Topology in Chemistry, Elsevier (1987), 3–22.

    Google Scholar 

  42. S. Suzuki, On linear graphs is 3-space, Osaka J.Math.7(1970),375–396.

    Google Scholar 

  43. D.M. Walba, Stereochemical topology, Proceedings of Symposium on Chemical Applications of Topology and Graph Theory, University of Georgia. 1983, R. B. King, Ed., Elsevier Pub.. 1983.

    Google Scholar 

  44. D.M. Walba, R.M. Richards, and R.C. Haltiwanger, Total synthesis of the first molecular Möbius strip, J. Am. Chem. Soc, 104 (1982), 3219–3221.

    Article  CAS  Google Scholar 

  45. D.M. Walba, Topological Stereochemistry, Tetrahedron Vol. 41(16) (1985). 3161–3212.

    Article  CAS  Google Scholar 

  46. E. Wasserman, Chemical topology, Scientific American 207(5) (1962), 94–102.

    Article  Google Scholar 

  47. E. Witten, Quantum field theory and the Jones polynomial, preprint 1988

    Google Scholar 

  48. E. Witten, Gauge theories and integrable lattice models. preprint February 1989

    Google Scholar 

  49. E. Witten, Gauge theories, vertex models, and quantum groups, preprint May 1989

    Google Scholar 

  50. S. Yamada, An invariant of spatial graphs. preprint 1987.

    Google Scholar 

  51. S. Yamamoto, Knots in spatial embeddings of the complete graph on four vertices, preprint 1988.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1991 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Millett, K.C. (1991). Algebraic Topological Indices of Molecular Chirality. In: Mezey, P.G. (eds) New Developments in Molecular Chirality. Understanding Chemical Reactivity, vol 5. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-3698-3_6

Download citation

  • DOI: https://doi.org/10.1007/978-94-011-3698-3_6

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-5644-1

  • Online ISBN: 978-94-011-3698-3

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics