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Comparative molecular field analysis (CoMFA)

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Abstract

Comparative molecular field analysis (CoMFA) is a method for three-dimensional (3D) quantitative structure-activity relationships (3D-QSAR) developed at Tripos. Although the concept of the approach has been known as dylomms (dynamic lattice-oriented molecular modeling system) (Wise et al., 1983) for over a decade, it was not until recent years that the method became widely used after it was reborn as CoMFA in 1988 (Cramer et al., 1988b,1993). The methodology has been patented (Cramer and Wold, 1991) and the program is available as a QSAR package in SYBYL.1

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References

  • Abola, E.E., Bernstein, F.C. and Koetzle, T.F. (1985) The Protein Data Bank. In The Role of Data in Scientific Progress (ed. P.S. Glaeser). Elsevier Science Publishers, New York.

    Google Scholar 

  • Abraham, D.J. and Kellogg, G.E. (1993) Hydrophobic fields. In 3D QSAR in Drug Design Theory, Methods and Applications (ed. H. Kubinyi), pp. 506–522. Escom, Leiden.

    Google Scholar 

  • Agarwal, A. and Taylor, E.W. (1993) 3-D QSAR for intrinsic activity of 5-HT1A receptor ligands by the method of comparative molecular field analysis. Journal of Computational Chemistry, 14, 237–245.

    Article  CAS  Google Scholar 

  • Agarwal, A., Pearson, P.P., Taylor, E.W., Li, H.B., Dahlgren, T., Herslof, M., Yang, Y.H., Lambert, G., Nelson, D.L., Regan, J.W. and Martin, A.R. (1993) 3-Dimensional quantitative structure-activity relationships of 5-HT receptor binding data for tetrahydropyridinylindole derivatives — a comparison of the Hansch and CoMFA Methods. Journal of Medicinal Chemistry, 36, 4006–4014.

    Google Scholar 

  • Akamatsu, M. and Fujita, T. (1992) Quantitative analyses of hydrophobicity of di- to pentapeptides having un-ionizable side chains with substituent and structural parameters. Journal of Pharmaceutical Sciences, 81, 164–174.

    Article  CAS  Google Scholar 

  • Akamatsu, M., Fujita, T., Ozoe, Y., Mochida, K., Nakamura, T. and Matsumura, F. (1993) Three-dimensional QSAR of insecticidal dioxatricycloalkene and its related compounds. In Trends in QSAR and Molecular Modelling ′92 (ed. CG. Wermuth), pp. 525–526. Escom, Leiden.

    Chapter  Google Scholar 

  • Akamatsu, M., Nishimura, K., Osabe, H., Ueno, T. and Fujita, T. (1994) Quantative structure-activity studies of pyrethroids, 29. Comparative molecular-field analysis (3-dimensional) of the knockdown activity of substituted benzyl chrysanthemates and tetramethrin and related imido- and lactam-N-carbinyl esters. Pesticide Biochemistry and Physiology, 48, 15–30.

    Article  CAS  Google Scholar 

  • Allen, M.S., Tan, Y.-C., Trudell, M.L., Narayanan, K., Schindler, L.R., Martin, M.J., Schultz, C., Hagen, T.J., Koehler, K.F., Codding, P.W., Skolnik, P. and Cook, J.M. (1990) Synthetic and computer-assisted analyses of the pharmacophore for the benzodiazepine receptor inverse agonist site. Journal of Medicinal Chemistry, 33, 2343–2357.

    Article  CAS  Google Scholar 

  • Allen, M.S., LaLoggia, A.J., Corn, L.J., Martin, M.J., Constantino, G., Hagen, T.J., Koehler, K.F., Skolnik, P. and Cook, J.M. (1992) Predictive binding of β-carboline inverse agonists and antagonists via the CoMFA/GOLPE approach. Journal of Medical Chemistry, 35, 4001–4010.

    Google Scholar 

  • Altomare, C., Carrupt, P.-A., Gaillard, P., Tayar, N.E., Testa, B. and Carotti, A. (1992) Quantitative structure-metabolism relationship analyses of MAO-mediated toxication of 1-methyl-4-phenyl-l,2,3,6-tetrahydropyridine and analogues. Chemical Research in Toxicology, 5, 366–375.

    Article  CAS  Google Scholar 

  • Andrews, P.R. (1993) Drug-receptor interactions. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 13–40. Escom, Leiden.

    Google Scholar 

  • Andrews, P.R. and Tintelnot, M. (1990) Intermodular forces and molecular binding. In Quantitative Drug Design (ed. C.A. Ramsden). Volume 4 of Comprehensive Medicinal Chemistry (eds C. Hansch, P.G. Sammes and J.B. Taylor), pp. 321–347. Pergamon Press, Oxford.

    Google Scholar 

  • Audry, E., Dubost, J.P., Colleter, J.C. and Dallet, P. (1986) Une nouvelle approche des relations structure activité: le potentiel de lipophilic moléculaire. European Journal of Medicinal Chemistry, 21, 71–72.

    CAS  Google Scholar 

  • Austel, V. (1982) Selection of test compounds from a basic set of chemical structures. European Journal of Medicinal Chemistry, 17, 339–347.

    CAS  Google Scholar 

  • Avery, M.A., Gao, F.G., Chong, W.K.M., Mehrotra, S. and Milhous, W.K. (1993) Structure-activity relationships of the antimalarial agent artemisinin 1 synthesis and comparative molecular-field analysis of C-9 analogs of artemisinin and 10-deoxoartemisinin. Journal of Medicinal Chemistry, 36, 4264–4275.

    Article  CAS  Google Scholar 

  • Barakat, M.T. and Dean, P.M. (1991) Molecular structure matching by simulated annealing III. The incorporation of null correspondences into the matching problem. Journal of Computer-Aided Molecular Design, 5, 107–117.

    Article  CAS  Google Scholar 

  • Baroni, M., Clementi, S., Cruciani, G., Costantino, G., Riganelli, D. and Oberrauch, E. (1992) Predictive ability of regression-models. 2. Selection of the best predictive PLS model. Journal of Chemometrics, 6, 347–356.

    Article  CAS  Google Scholar 

  • Baroni, M., Costantino, G., Cruciani, G., Riganelli, D., Valigi, R. and Clementi, S. (1993) Generating optimal linear PLS estimations (GOLPE): an advanced tool for handling 3D-QSAR problems. Quantitative Structure-Activity Relationships, 12, 9–20.

    Article  CAS  Google Scholar 

  • Blaney, J.M. and Hansch, C. (1990) Application of molecular graphics to the analysis of macromolecular structures. In Quantitative Drug Design (ed. C.A. Ramsden). Volume 4 of Comprehensive Medicinal Chemistry (eds C. Hansch, P.G. Sammes and J.B. Taylor), pp. 459–496. Pergamon Press, Oxford.

    Google Scholar 

  • Boobbyer, D.N., Goodford, P.J., McWhinnie, P.M. and Wade, R.C. (1989) New hydrogen-bond potentials for use in determining energetically favorable binding sites on moleules of known structure. Journal of Medicinal Chemistry, 32, 1083–1094.

    Article  CAS  Google Scholar 

  • Bures, M.G., Martin, Y.C. and Willett, P. (1994) Searching techniques for databases of three-dimensional chemical structures. Topics in Stereochemistry, 21, 467–511.

    Article  CAS  Google Scholar 

  • Burke, B.J. and Hopfinger, A.J. (1993) Advances in molecular shape analysis. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 276–306. Escom, Leiden.

    Google Scholar 

  • Burt, S.K.L. and Greer, J. (1988) Search strategies for determining bioactive conformers of peptides and small molecules. Annual Reports in Medicinal Chemistry, 23, 285–294.

    Article  CAS  Google Scholar 

  • Burt, C., Richards, W.G. and Huxley, P. (1990) The application of molecular similarity calculations. Journal of Computational Chemistry, 11, 1139–1146.

    Article  CAS  Google Scholar 

  • Bush, B.L. and Nachbar, R.B., Jr (1993) Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA. Journal of Computer-Aided Molecular Design, 7, 587–619.

    Article  CAS  Google Scholar 

  • Bustard, T.M. (1974) Optimization of alkyl modifications by Fibonacci search. Journal of Medicinal Chemistry, 17, 777–778.

    Article  CAS  Google Scholar 

  • Cambridge Structural Database System User’s Manual (1989) Parts 1 and 2. Cambridge Crystallographic Data Centre, Cambridge.

    Google Scholar 

  • Carroll, F.I., Gao, Y., Rahman, M.A., Abraham, P., Parham, K., Lewin, A.H., Boja, J.W. and Kuhar, M.J. (1991) Synthesis, ligand binding, QSAR, and CoMFA study of 3β-(p-substituted phenyl)tropane-2 β -carboxylic acid methyl esters, Journal of Medicinal Chemistry, 34, 2719–2725.

    Article  CAS  Google Scholar 

  • Clark, M. and Cramer, R.D. III (1993) The probability of chance correlation using partial least squares (PLS). Quantitative Structure-Activity Relationships, 12, 137–145.

    Article  CAS  Google Scholar 

  • Clark, M., Cramer, R.D. III, Jones, D.M., Patterson, D.E. and Simeroth, P.E. (1990) Comparative molecular field analysis (CoMFA). 2. Toward its use with 3D-structural databases. Tetrahedron Computer Methodology, 3, 47–59.

    Article  CAS  Google Scholar 

  • Clementi, S. (1984) Statistics and drug design. In Drug Design: Fact or Fantasy (eds G. Jolles and K.R.H. Wooldridge), pp. 73–94. Academic Press, London.

    Google Scholar 

  • Clementi, S., Cruciani, G., Baroni, M. and Costantino, G. (1993) Series design. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 567–582. Escom, Leiden.

    Google Scholar 

  • Cocchi, M. and Johansson, E. (1993) Amino acids characterization by grid and multivariate data analysis. Quantitative Structure-Activity Relationships, 12, 1–8.

    Article  CAS  Google Scholar 

  • Cohen, N.C, Blaney, J.M., Humblet, C., Gund, P. and Barry, D.C. (1990) Molecular modeling software and methods for medicinal chemistry. Journal of Medicinal Chemistry, 33, 883–894.

    Article  CAS  Google Scholar 

  • Craig, P.N. (1971) Interdependence between physical parameters and selection of substituent groups for correlation studies. Journal of Medicinal Chemistry, 14, 680–684.

    Article  CAS  Google Scholar 

  • Cramer, R.D. III (1980) BC(DEF) parameters. 1. The intrinsic dimensionality of intermolecular interactions in the liquid. Journal of the American Chemical Society, 102, 1837–1849.

    Article  CAS  Google Scholar 

  • Cramer, R.D. III (1993) Partial least squares (PLS): its strengths and limitations. Perspectives in Drug Discovery and Design, 1, 269–278.

    Article  CAS  Google Scholar 

  • Cramer, R.D. III and Wold, S.B. (1991) Comparative molecular field analysis (COMFA). US Patent 5,025,388.

    Google Scholar 

  • Cramer, R.D. III, Bunce, J.D, Patterson, D.E. and Frank, I.E. (1988a) Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies. Quantitative Structure-Activity Relationships, 7, 18–25.

    Article  Google Scholar 

  • Cramer, R.D. III, Patterson, D.E. and Bunce, J.D. (1988b) Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. Journal of the American Chemical Society, 110, 5959–5967.

    Article  CAS  Google Scholar 

  • Cramer, R.D. III, DePriest, S.A., Patterson, D.E. and Hecht, P. (1993) The developing practice of comparative molecular field analysis. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 443–485. Escom, Leiden.

    Google Scholar 

  • Crippen, G.M. (1980) Quantitative structure-activity relationships by distance geometry: systematic analysis of dihydrofolate reductase inhibitors. Journal of Medicinal Chemistry, 23, 599–606.

    Article  CAS  Google Scholar 

  • Crippen, G.M. (1987) Voronoi binding site models. Journal of Computational Chemistry, 8, 943–954.

    Article  CAS  Google Scholar 

  • Cruciani, G., Baroni, M., Clementi, S., Costantino, G., Riganelli, D. and Skagerberg, B. (1992) Prediction ability of regression models. Part I. The SDEP parameter. Journal of Chemometrics, 6, 335–346.

    Article  CAS  Google Scholar 

  • Cruciani, B, Clementi, S. and Baroni, M. (1993) Variable selection in PLS analysis. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 551–564. Escom, Leiden.

    Google Scholar 

  • Dammkoehler, R.A, Karasek, S.F., Shands, E.F.B, and Marshall, G.R. (1989) Constrained search of conformation hyperspace. Journal of Computer-Aided Molecular Design, 3, 3–21.

    Article  CAS  Google Scholar 

  • Darvas, F. (1974) Application of the sequential simplex method in designing drug analogs. Journal of Medicinal Chemistry, 17, 799–804.

    Article  CAS  Google Scholar 

  • Davis, A.M., Gensmantel, N.P. and Marriott, D.P. (1993) Use of the grid program in the 3-D QSAR analysis of a series of calcium channel agonists. In Trends in QSAR and Molecular Modelling ′92 (ed. C.G. Wermuth), pp. 156–518. Escom, Leiden.

    Google Scholar 

  • Dean, P.M. (1993) Molecular similarity. In 3D QSAR in Drug Design (ed. H. Kubinyi), pp. 150–172. Escom, Leiden.

    Google Scholar 

  • Dean, P.M. and Callow, P. (1987) Molecular recognition: identification of local minima for matching in rotational 3-space by cluster analysis. Journal of Molecular Graphics, 5, 159–164.

    Article  CAS  Google Scholar 

  • Dean, P.M. and Chau, P.-L. (1987) Molecular recognition: optimized searching through rotational 3-space for pattern matches on molecular surfaces. Journal of Molecular Graphics, 5, 152–158.

    Article  CAS  Google Scholar 

  • Dean, P.M., Callow, P. and Chau, P.-L. (1988) Molecular recognition: blind-searching for regions of strong structural match on the surfaces of two dissimilar molecules. Journal of Molecular Graphics, 6, 28–34, 38.

    Article  CAS  Google Scholar 

  • Debnath, A.K, Hansch, C., Kim, K.H. and Martin, Y.C. (1993) Mechanistic interpretation of the genotoxicity of nitrofurans as antibacterial agents using quantitative structure-activity relationships (QSAR) and comparative molecular field analysis (CoMFA). Journal of Medicinal Chemistry, 36, 1007–1016.

    Article  CAS  Google Scholar 

  • DePriest, S.A., Shands, E.F.B, Dammkoehler, R.A. and Marshall, G.R. (1991) 3D-QSAR: further studies on inhibitors of angiotensin-converting enzyme. In QSAR: Rational Approaches to the Design of Bioactive Compounds (eds C. Silipo and A. Vittoria), pp. 405–414. Elsevier Science Publishers, Amsterdam.

    Google Scholar 

  • DePriest, S.A., Meyer, D., Naylor, C.B. and Marshall, G.R. (1993) 3D-QSAR of angiotensin-converting enzyme and thermolysin inhibitors — a comparison of CoMFA models based on deduced and experimentally determined active-site geometries. Journal of the American Chemical Society, 115, 5372–5384.

    Article  CAS  Google Scholar 

  • Diana, G.D., Kowalczyk, P., Treasurywala, A.M., Oglesby, R.C., Pevear, D.C. and Dutko, F.J. (1992) CoMFA analysis of the interactions of antipicornavirus compounds in the binding pocket of human rhinovirus-14. Journal of Medicinal Chemistry, 35, 1002–1008.

    Article  CAS  Google Scholar 

  • Doweyko, A.M. (1988) The hypothetical active site lattice. An approach to modelling active sites from data on inhibitor molecules. Journal of Medicinal Chemistry, 31, 1396–1406.

    Article  CAS  Google Scholar 

  • Efron, B. and Gong, G. (1983) A leisurely look at the bootstrap, the jackknife, and cross-validation. The American Statistician, 37, 36–48.

    Google Scholar 

  • El-Bermawy, M., Lotter, H. and Glennon, R.A. (1992) Comparative molecular field analysis of the binding of arylpiperazines at 5-HT1A serotonin receptors. Medicinal Chemistry Research, 2, 290–297.

    CAS  Google Scholar 

  • Erickson, J.W. and Fesik, S.W. (1992) Macromolecular x-ray crystallography and NMR as tools for structure-based drug design. Annual Report in Medicinal Chemistry, 27, 271–289.

    Article  CAS  Google Scholar 

  • Fersht, A.R., Shi, J., Knill-Jones, J., Lowe, D.M., Wilkinson, A.J., Blow, D.M., Brick, P., Carter, P., Waye, M.M.Y, and Winter, G. (1985) Hydrogen bonding and biological specificity analysed by protein engineering. Nature, 314, 235–238.

    Article  CAS  Google Scholar 

  • Fesik, S.W. (1991) NMR studies of molecular complexes as a tool in drug design. Journal of Medicinal Chemistry, 34, 2937–2945.

    Article  CAS  Google Scholar 

  • Floersheim, P., Nozulak, J. and Weber, H.P. (1993) Experience with comparative molecular field analysis. In Trends in QSAR and Molecular Modelling ′92 (ed. CG. Wermuth), pp. 227–232. Escom, Leiden.

    Chapter  Google Scholar 

  • Folkers, G., Merz, A. and Rognan, D. (1993) CoMFA: scope and limitations. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 583–618. Escom, Leiden.

    Google Scholar 

  • Franke, R. (1984) Theoretical Drug Design Methods. Elsevier, New York.

    Google Scholar 

  • Furet, P., Sele, A. and Cohen, N.C. (1988) 3D molecular lipophilicity potential profiles: a new tool in molecular modeling. Journal of Molecular Graphics, 6, 182–189.

    Article  CAS  Google Scholar 

  • Gasteiger, J. and Marsili, M. (1980) Iterative partial equalization of orbital electronegativity — a rapid access to atomic charges. Tetrahedron, 36, 3219–3288.

    Article  CAS  Google Scholar 

  • Ghose, A.K. and Crippen, G.M. (1990) Modeling the benzodiazepine receptor binding site by the general three-dimensional structure-directed quantitative structure-activity relationship method remotedisc. Molecular Pharmacology, 37, 725–734.

    CAS  Google Scholar 

  • Golender, V.E. and Vorpagel, E.R. (1993) Computer-assisted pharmacophore identification. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 137–149. Escom, Leiden.

    Google Scholar 

  • Good, A.C. (1992) The calculation of molecular similarity: alternative formulas, data manipulation and graphical display. Journal of Molecular Graphics, 10, 144–151.

    Article  CAS  Google Scholar 

  • Good, A.C. and Richards, W.G. (1993) Rapid evaluation of shape similarity using Gaussian functions. Journal of Chemical Information and Computer Sciences, 33, 112–116.

    Article  CAS  Google Scholar 

  • Good, A.C., Hodgkin, E.E. and Richards, W.G. (1992) Utilization of Gaussian functions for the rapid evaluation of molecular similarity. Journal of Chemical Information and Computer Sciences, 32, 188–191.

    Article  CAS  Google Scholar 

  • Good, A.C., So, S.S. and Richards, W.G. (1993a) Structure-activity relationships from molecular similarity-matrices. Journal of Medicinal Chemistry, 36, 433–438.

    Article  CAS  Google Scholar 

  • Good, A.C., Peterson, S.J. and Richards, W.G. (1993b) QSARS from similarity matrices — technique validation and application in the comparison of different similarity evaluation methods. Journal of Medicinal Chemistry, 36, 2929–2937.

    Article  CAS  Google Scholar 

  • Greco, G., Novellino, E., Silipo, C. and Vittoria, A. (1991) Comparative molecular field analysis on a set of muscarinic agents. Quantitative Structure-Activity Relationships, 10, 289–299.

    Article  CAS  Google Scholar 

  • Greco, G., Novellino, E., Silipo, C. and Vittoria, A. (1992) Study of benzodiazepines receptor sites using a combined QSAR-CoMFA approach. Quantitative Structure–Activity Relationships, 11, 461–477.

    Article  CAS  Google Scholar 

  • Hansch, C. (1981) The physicochemical approach to drug design and discovery (QSAR). Drug Development and Research, 1, 267–309.

    Article  CAS  Google Scholar 

  • Hansch, C. and Fujita, T. (1964) Rho sigma pi analysis. A method for the correlation of biological activity and chemical structure. Journal of the American Chemical Society, 86, 1616–1626.

    Article  CAS  Google Scholar 

  • Hansch, C., Unger, S.H. and Forsythe, A.B. (1973) Strategy in drug design. Cluster analysis as an aid in the selection of substituents. Journal of Medicinal Chemistry, 16, 1217–1222.

    Article  CAS  Google Scholar 

  • Hopfinger, A.J. (1977) Intermodular Interactions and Biomolecular Organization, pp. 320–324. John Wiley, New York.

    Google Scholar 

  • Hopfinger, A.J. (1980) A QSAR investigation of dihydrofolate reductase inhibition by Baker triazines based upon molecular shape analysis. Journal of the American Chemical Society, 102, 7196–7206.

    Article  CAS  Google Scholar 

  • Hopfinger, A.J. (1985) Computer-assisted drug design. Journal of Medicinal Chemistry, 28, 1133–1139.

    Article  CAS  Google Scholar 

  • Horwitz, J.P, Massova, I., Wiese, T.E, Besler, B.H. and Corbett, T.H. (1994) Comparative molecular field analysis of the antitumor activity of 9H-Thioxanthen-9-one derivatives against pancreatic ductal carcinoma 03. Journal of Medicinal Chemistry, 37, 781–786.

    Article  CAS  Google Scholar 

  • Hoskuldsson, A. (1988) PLS regression methods. Journal of Chemometrics, 2, 211–228.

    Article  Google Scholar 

  • Howard, A.E. and Kollman, P.A. (1988) An analysis of current methodologies for conformational searching of complex molecules. Journal of Medicinal Chemistry, 31, 1669–1675.

    Article  CAS  Google Scholar 

  • Itai, A., Tomioka, N., Yamada, M., Inoue, A. and Kato, Y. (1993) Molecular superposition for rational drug design. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 200–225. Escom, Leiden.

    Google Scholar 

  • Kato, I., Itai, A. and Iitaka, Y. (1987) A novel method for superimposing molecules and mapping. Tetrahedron, 43, 5229–5234.

    Article  CAS  Google Scholar 

  • Kato, Y., Inoue, A., Yamada, M., Tomioka, N. and Itai, A. (1992) Automatic superposition of drug molecules based on their common receptor site. Journal of Computer-Aided Molecular Design, 6, 475–486.

    Article  CAS  Google Scholar 

  • Kearsley, S.K. and Smith, G.M. (1990) An alternative method for the alignment of molecular structures: maximizing electrostatic and steric overlap. Tetrahedron Computer Methodology, 3, 615–633.

    Article  CAS  Google Scholar 

  • Kellogg, G.E, Semus, S.F. and Abraham, D.J. (1991) HINT: a new method of empirical hydrophobic field calculations for CoMFA. Journal of Computer-Aided Molecular Design, 5, 545–552.

    Article  CAS  Google Scholar 

  • Klebe, G. (1993) Structural alignment of molecules. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 173–199. Escom, Leiden.

    Google Scholar 

  • Kim, K.H. (1991) A novel method of describing hydrophobic effects directly from 3D structures in 3D-quantitative structure-activity relationships study. Medicinal Chemistry Research, 1, 259–264.

    CAS  Google Scholar 

  • Kim, K.H. (1992a) 3D-quantitative structure-activity relationships: nonlinear dependence described directly from 3D structures using comparative molecular field analysis (CoMFA). Quantitative Structure-Activity Relationships, 11, 309–317.

    Article  CAS  Google Scholar 

  • Kim, K.H. (1992b) 3D-quantitative structure-activity relationships: investigation of steric effects with descriptors directly from 3D structures using a comparative molecular field analysis (CoMFA) approach. Quantitative Structure-Activity Relationships, 11, 453–460.

    Article  CAS  Google Scholar 

  • Kim, K.H. (1992c) 3D-quantitative structure-activity relationships: description of electronic effects directly from 3D structures using a grid-comparative molecular field analysis (CoMFA) approach. Quantitative Structure-Activity Relationships, 11, 127–134.

    Article  CAS  Google Scholar 

  • Kim, K.H. (1992d) Description of nonlinear dependence directly from 3D structures in 3D-quantitative structure-activity relationships. Medicinal Chemistry Research, 2, 22–27.

    CAS  Google Scholar 

  • Kim, K.H. (1993a) 3D-quantitative structure-activity relationships — describing hydrophobic interactions directly from 3D structures using a comparative molecular-field analysis (CoMFA) approach. Quantitative Structure-Activity Relationships, 12, 232–238.

    Article  CAS  Google Scholar 

  • Kim, K.H. (1993b) Use of the hydrogen-bond potential function in comparative molecular field analysis (CoMFA): an extension of CoMFA. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 245–251. Escom, Leiden.

    Google Scholar 

  • Kim, K.H. (1993c) Nonlinear dependence in comparative molecular field analysis (CoMFA). Journal of Computer-Aided Molecular Design, 7, 71–82.

    Article  CAS  Google Scholar 

  • Kim, K.H. (1993d) Comparison of classical and 3D QSAR. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 619–642. Escom, Leiden.

    Google Scholar 

  • Kim, K.H. (1993e) Use of indicator variable in comparative molecular field analysis. Medicinal Chemistry Research, 3, 257–267.

    CAS  Google Scholar 

  • Kim, K.H. (1994) Separation of electronic, hydrophobic, and steric effects in 3D-quantitative structure-activity relationships with descriptors directly from 3D structures using a comparative molecular field analysis (CoMFA) approach. Research Trends. In press.

    Google Scholar 

  • Kim, K.H. and Martin, Y.C. (1991a) Direct prediction of dissociation constants (pK a’s) of Clonidine-like imidazolines, 2-substituted imidazoles, and l-methyl-2-substituted-imidazoles from 3D structures using a comparative molecular field analysis (CoMFA) approach. Journal of Medicinal Chemistry, 34, 2056–2060.

    Article  CAS  Google Scholar 

  • Kim, K.H. and Martin, Y.C. (1991b) Direct prediction of linear free energy substituent effects from 3D structures using comparative molecular field analysis. 1. Electronic effects of substituted benzoic acids. Journal of Organic Chemistry, 56, 2723–2729.

    Article  CAS  Google Scholar 

  • Kim, K.H. and Martin, Y.C. (1991c) Evaluation of electrostatic and steric descriptors for 3D-QSAR: the H+ and CH3 probes using comparative molecular field analysis (CoMFA) and the modified partial least squares method. In QSAR: Rational Approaches to the Design of Bioactive Compounds (eds C. Silipo and A. Vittoria), pp. 151–154. Elsevier Science Publishers, Amsterdam.

    Google Scholar 

  • Kim, K.H. and Martin, Y.C. (1995). In preparation.

    Google Scholar 

  • Kim, K.H., Greco, G., Novellino, E., Silipo, C. and Vittoria, A. (1992) Use of the hydrogen bond potential function in a comparative molecular field analysis (CoMFA) on a set of benzodiazepines. Journal of Computer-Aided Molecular Design, 7, 263–280.

    Article  Google Scholar 

  • Klebe, G. and Abraham, U. (1993) On the prediction of binding properties of drug molecules by comparative molecular field analysis. Journal of Medicinal Chemistry, 36, 70–80.

    Article  CAS  Google Scholar 

  • Kubinyi, H. (1990) The Free-Wilson method and its relationship to the extrathermodynamic approach. In Quantitative Drug Design (ed. C.A. Ramsden). Volume 4 of Comprehensive Medicinal Chemistry (eds C. Hansch, P.G. Sammes and J.B. Taylor), pp. 589–643. Pergamon Press, Oxford.

    Google Scholar 

  • Kubinyi, H. (ed.) (1993a) 3D QSAR in Drug Design. Theory, Methods and Applications. Escom, Leiden.

    Google Scholar 

  • Kubinyi, H. (1993b) QSAR: Hansch Analysis and Related Approaches, pp. 109–114. VCH, Weinheim.

    Book  Google Scholar 

  • Kubinyi, H. and Abraham, U. (1993) Practical problems in PLS analyses. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 717–728. Esco, Leiden.

    Google Scholar 

  • Langraft, B., Cohen, F.E., Smith, K.A., Gadski, R. and Ciardelli, T.L. (1989) Structural significance of the C-terminal amphiphilic helix of interleukin-2. Journal of Biological Chemistry, 264, 816–822.

    Google Scholar 

  • Lawrence, M.C. and Davis, P.C. (1992) clix: a search algorithm for finding novel ligands capable of binding proteins of known three-dimensional structure. Proteins: Structure Function and Genetics, 12, 31–41.

    Article  CAS  Google Scholar 

  • Leach, A.R. (1991) A survey of methods for searching the conformational space of small and medium sized molecules. In Reviews of Computational Chemistry, Vol. II (eds K.B. Lipkowitz and D.B. Boyd), pp. 1–55. VCH Publishers, New York.

    Google Scholar 

  • Lin, C.T., Pavlik, P.A. and Martin, Y.C. (1990) Use of molecular fields to compare series of potentially bioactive molecules designed by scientists or by computer. Tetrahedron Computer Methodology, 3(6c), 723–738.

    Article  CAS  Google Scholar 

  • Liu, R. and Matheson, L.E. (1994) Comparative molecular field analysis combined with physicochemical parameters for prediction of polydimethylsiloxane membrane flux in Isopropanol. Pharmaceutical Research, 11, 257–266.

    Article  CAS  Google Scholar 

  • Lorber, A., Wangen, L.E. and Kowalski, B.R. (1987) A theoretical foundation for the PLS algorithm. Journal of Chemometrics, 1, 19–31.

    Article  CAS  Google Scholar 

  • Loughney, D.A. and Schwender, C.F. (1992) A comparison of progestin and androgen receptor binding using the CoMFA technique. Journal of Computer-Aided Molecular Design, 6, 569–581.

    Article  CAS  Google Scholar 

  • Mager, P.P. (1991) Non least-squares jackknife regression in drug design. Drug Design Delivery, 7, 119–129.

    CAS  Google Scholar 

  • Marshall, G.R. (1987) Computer-aided drug design. Annual Reviews in Pharmacology and Toxicology, 27, 193–213.

    Article  CAS  Google Scholar 

  • Marshall, G.R. (1993) Binding-site modeling of unknown receptors. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 80–116. Escom, Leiden.

    Google Scholar 

  • Marshall, G.R. and Naylor, C.B. (1990) Use of molecular graphics for structural analysis of small molecules. In Quantitative Drug Design (ed. C.A. Ramsden). Volume 4 of Comprehensive Medicinal Chemistry (eds C. Hansch, P.G. Sammes and J.B. Taylor), pp. 431–458. Pergamon Press, Oxford.

    Google Scholar 

  • Marshall, G.R., Barry, C.D., Bosshard, H.E., Dammkoehler, R.A. and Dunn, D.A. (1979) The conformation parameter in drug design: the active analog approach. In Computer-Assisted Drug Design (eds E.C Olson and R.E. Christoffersen), pp. 205–226. American Chemical Society, Washington, DC.

    Chapter  Google Scholar 

  • Marshall, G.R., Mayer, D., Naylor, C.B., Hodgkin, E.E. and Cramer, R.D. III (1989) Mechanism-based analysis of enzyme inhibitors of amide bond hydrolysis. In QSAR: Quantitative Structure-Activity Relationships in Drug Design (ed. J.L. Fauchere), pp. 287–295. Alan R. Liss, New York.

    Google Scholar 

  • Martin, Y.C. (1978) Quantitative Drug Design, p. 425. Dekker, New York.

    Google Scholar 

  • Martin, Y.C. (1981) A practitioner’s perspective on the role of quantitative structure-activity analysis in medicinal chemistry. Journal of Medicinal Chemistry, 24, 229–237.

    Article  CAS  Google Scholar 

  • Martin, Y.C. (1991) Computer-assisted rational drug design. Methods in Enzymology, 203, 587–613.

    Article  CAS  Google Scholar 

  • Martin, Y.C. (1992) 3D database searching in drug design. Journal of Medicinal Chemistry, 35, 2145–2154.

    Article  CAS  Google Scholar 

  • Martin, Y.C., Bures, M.G., Danaher, E.A., DeLazzer, J., Lico, I. and Pavlik, P.A. (1993a) A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists. Journal of Computer-Aided Molecular Design, 7, 83–102.

    Article  CAS  Google Scholar 

  • Martin, Y.C., Bures, M.G., Danaher, E.A. and DeLazzer, J. (1993b) New strategies that improve the efficiency of the 3D design of bioactive molecules. In Trends in QSAR and Molecular Modelling ′92 (ed. C.G. Wermuth), pp. 20–26. Escom, Leiden.

    Chapter  Google Scholar 

  • Martin, Y.C., Lin, C.T. and Wu, J. (1993c) Application of CoMFA to the design and structural optimization of dopaminergic agonists. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 643-660. Escom, Leiden.

    Google Scholar 

  • Martin, Y.C., Kim, K.H. and Lin, C.T. (1995) Comparative Molecular Field Analysis: CoMFA (ed. M. Charton). In press.

    Google Scholar 

  • Mattos, C. and Ringe, D. (1993) Multiple binding modes. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 226–254. Escom, Leiden.

    Google Scholar 

  • McFarland, J.W. (1992) Comparative molecular field analysis of anticoccidial triazines. Journal of Medicinal Chemistry, 35, 2543–2550.

    Article  CAS  Google Scholar 

  • Meyer, Jr, E.F., Radhakrishnan, R., Cole, G.M. and Presta, L.G. (1986) Structure of the product complex of acetyl-Ala-Pro-Ala with porcine pancreatic elastase at 1.65 Å resolution. Journal of Molecular Biology, 189, 533–539.

    Article  CAS  Google Scholar 

  • Miyashita, Y., Ohsako, H., Takayama, C. and Sasaki, S.-I. (1992) Multivariate structure-activity relationships analysis of fungicidal and herbicidal thiolcarbamates using partial least squares method. Quantitative Structure-Activity Relationships, 11, 17–22.

    Article  CAS  Google Scholar 

  • Naerum, L. and Jensen, J.S. (1991) 3D-QSAR of a number of new non-NMDA receptor antagonists. In QSAR: Rational Approaches to the Design of Bioactive Compounds (eds C. Silipo and A. Vittoria), pp. 489–492. Elsevier Science Publishers, Amsterdam.

    Google Scholar 

  • Nicklaus, M.C., Milne, G.W.A. and Burke, Jr, T.R. (1992) QSAR of conformationally flexible molecules: comparative molecular field analysis of protein-tyrosine kinase inhibitors. Journal of Computer-Aided Molecular Design, 6, 487–504.

    Article  CAS  Google Scholar 

  • Norinder, U. (1990) Experimental design based 3-D QSAR analysis of steroid-protein interactions: applications to human CBG complexes. Journal of Computer-Aided Molecular Design, 4, 381–389.

    Article  CAS  Google Scholar 

  • Norinder, U. (1991a) 3D QSAR analysis of steroid-protein interactions — the use of difference maps. Journal of Computer-Aided Molecular Design, 5, 419–426.

    Article  CAS  Google Scholar 

  • Norinder, U. (1991b) Theoretical amino acid descriptors. Application to bradykinin potentiating peptides. Peptides, 12, 1223–1227.

    Article  CAS  Google Scholar 

  • Osabe, H., Morishima, Y., Goto, Y. and Fujita, T. (1992) Quantitative structure-activity relationships of light-dependent herbicidal 4-Pyridone-3-Carboxanilides III. 3-D (comparative molecular field) analysis including light-dependent diphenyl ether herbicides. Pesticide Science, 35, 187–200.

    Article  CAS  Google Scholar 

  • Papadopoulos, M.C. and Dean, P.M. (1991) Molecular structure matching by simulated annealing. 4. Classification of atom correspondences in sets of dissimilar molecules. Journal of Computer-Aided Molecular Design, 5, 119–133.

    Article  CAS  Google Scholar 

  • Pastor, M. and Alvarez-Builla, J. (1991) The edisfar programs. Rational drug series design. Quantitative Structure-Activity Relationships, 10, 350–358.

    Article  CAS  Google Scholar 

  • Pearlman, R.S. (1993) 3D molecular structures: generation and use in 3D searching. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 41–79. Escom, Leiden.

    Google Scholar 

  • Pellicciari, R., Natalini, B., Costantino, G., Garzon, A., Luneia, R., Mahmoud, M.R., Marinozzi, M., Roberti, M., Rosato, G.C. and Shiba, S.A. (1993) Heterocyclic modulators of the NMDA receptor. Il Farmaco, 48, 151–157.

    CAS  Google Scholar 

  • Perkins, T.D.J. and Dean, P.M. (1993) An exploration of a novel strategy for superposing several flexible molecules. Journal of Computer-Aided Molecular Design, 7, 155–172.

    Article  CAS  Google Scholar 

  • Phatak, A., Reilly, P.M. and Penlidis, A. (1993) An approach to interval estimation in partial least squares regression. Analytica Chemica Acta, 277, 495–501.

    Article  CAS  Google Scholar 

  • Pleiss, M.A. and Unger, S.H. (1990) The design of test series and the significance of QSAR relationship. In Quantitative Drug Design (ed. C.A. Ramsden). Volume 4 of Comprehensive Medicinal Chemistry (eds C. Hansch, P.G. Sammes and J.B. Taylor), pp. 561–587. Pergamon Press, Oxford.

    Google Scholar 

  • Plummer, E.L. (1990) The application of quantitative design strategies in pesticide discovery. In Reviews in Computational Chemistry, Vol. I (eds K.B. Lipkowitz and D.B. Boyd), pp. 119–168. VCH Publishers, New York.

    Chapter  Google Scholar 

  • Sadowski, J. and Gasteiger, J. (1993) From atoms and bonds to three-dimensional atomic coordinates: automatic model builders. Chemical Reviews, 93, 2567–2581.

    Article  CAS  Google Scholar 

  • Santora, N.J. and Auyang, K. (1975) Non-computer approach to structure-activity study. An expanded Fibonacci search applied to structurally diverse types of compounds. Journal of Medicinal Chemistry, 18, 959–963.

    Article  CAS  Google Scholar 

  • Saunderson, R.T. (1983) Electronegativity and bond energy. Journal of the American Chemical Society, 105, 2259–2261.

    Article  Google Scholar 

  • Seibel, G.L. and Kollman, P.A. (1990) Molecular mechanics and the modeling of drug structures. In Quantitative Drug Design (ed. C.A. Ramsden). Volume 4 of Comprehensive Medicinal Chemistry (eds C. Hansch, P.G. Sammes and J.B. Taylor), pp. 125–138. Pergamon Press, Oxford.

    Google Scholar 

  • Sheridan, R.P., Nilakantan, R., Dixon, J.S. and Venkataraghavan, R. (1986) The ensemble approach to distance geometry: application to the nicotinic pharmacophore. Journal of Medicinal Chemistry, 29, 899–906.

    Article  CAS  Google Scholar 

  • Simon, Z. (1993) MTD and hyperstructure approaches. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 307–319. Escom, Leiden.

    Google Scholar 

  • Simon, Z., Badileuscu, I. and Racovitan, T. (1977) Mapping of dihydrofolate-reductase receptor site by correlation with minimal topological (steric) differences. Journal of Theoretical Biology, 485–495.

    Google Scholar 

  • Simon, Z., Dragomir, N., Plauchithiu, M.G., Holban, S., Glatt, H. and Kerek, F. (1980) Receptor site mapping for cardiotoxic aglycones by the minimal steric difference method. European Journal of Medicinal Chemistry, 15, 521–527.

    CAS  Google Scholar 

  • Smith, H.J. (1988) Introduction to the Principles of Drug Design, pp. 240–264. Wright, London.

    Google Scholar 

  • Srivastava, S., Richardson, W.W., Bradley, M.P. and Crippen, G.M. (1993) Three-dimensional receptor modelling using distance geometry and Voronoi polyhedra. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 409–430. Escom, Leiden.

    Google Scholar 

  • Stone, M. (1974) Cross-validatory choice and assessment of statistical predictions. Journal of the Royal Statistical Society, B, 36, 111–133.

    Google Scholar 

  • Street, I.P., Armstrong, C.R. and Withers, S.G. (1986) Hydrogen bonding and specificity. Fluorodeoxy sugars as probes of hydrogen bonding in the glycogen Phosphorylase-glucose complex. Biochemistry, 25, 6021–6027.

    Article  CAS  Google Scholar 

  • Thibaut, U., Folkers, G., Klebe, G., Kubinyi, H., Merz, A. and Rognan, D. (1993) Recommendations for CoMFA studies and 3D QSAR publications. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 711–716. Escom, Leiden.

    Google Scholar 

  • Thomas, B.F., Compton, D.R., Martin, B.R. and Semus, S.F. (1991) Modeling the cannabinoid receptor — a 3-dimensional quantitative structure-activity analysis. Molecular Pharmacology, 40, 656–665.

    CAS  Google Scholar 

  • Topliss, J.G. (1993) Some observations on classical QSAR. Perspectives in Drug Discovery and Design, 1, 253–268.

    Article  CAS  Google Scholar 

  • Topliss, J.G. (1974a) Utilization of operational schemes for analog synthesis in drug design. Journal of Medicinal Chemistry, 17, 799–804.

    Article  Google Scholar 

  • Topliss, J.G. (1974b) A manual method for applying the Hansch approach to drug design. Journal of Medicinal Chemistry, 20, 463–469.

    Article  Google Scholar 

  • van Geerestein, V.J., Perry, N.C., Grootenhuis, P.D.J. and Haasnoot, C.A.G. (1990) 3D shape fitting and 3D DB searching by sperm. Tetrahedron Computer Methodology, 3, 595–613.

    Article  Google Scholar 

  • Wade, R.C. (1993) Molecular interaction fields. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 486–506. Escom, Leiden.

    Google Scholar 

  • Wade, R.C. and Goodford, P.J. (1993) Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 2. Ligand probe groups with the ability to form more than two hydrogen bonds. Journal of Medicinal Chemistry, 36, 148–156.

    Article  CAS  Google Scholar 

  • Wade, R.C., Clark, K.J. and Goodford, P.J. (1993) Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 1. Ligand probe groups with the ability to form two hydrogen bonds. Journal of Medicinal Chemistry, 36, 140–147.

    Article  CAS  Google Scholar 

  • Wakeling, I.N. and Morris, J.J. (1993) A test of significance for partial least squares regression. Journal of Chemometrics, 7, 291–304.

    Article  CAS  Google Scholar 

  • Waller, C.L. and McKinney, J.D. (1992) Comparative molecular field analysis of polyhalogenated dibenzo-p-dioxins, dibenzofurans, and biphenyls. Journal of Medicinal Chemistry, 35, 3660–3666.

    Article  CAS  Google Scholar 

  • Waller, C.L. and Marshall, G.R. (1993) 3-Dimensional quantitative structure-activity relationship of angiotensin-converting enzyme and thermolysin inhibitors. 2. A comparison of CoMFA models incorporating molecular-orbital fields and desolvation free-energies based on active-analog and complementary-receptor field alignment rules. Journal of Medicinal Chemistry, 36, 2390–2403.

    Article  CAS  Google Scholar 

  • Waller, C.L., Oprea, T.I., Giolitti, A. and Marshall, G.R. (1993) 3-Dimensional QSAR of human-immunodeficiency-virus-1 protease inhibitors. 1.1 Å CoMFA study employing experimentally determined alignment rules. Journal of Medicinal Chemistry, 36, 4152–4160.

    Article  CAS  Google Scholar 

  • Wermuth, C.-G. and Langer, T. (1993) Pharmacophore identification. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 117–136. Escom, Leiden.

    Google Scholar 

  • Wiese, M. (1993) The hypothetical active-site lattice. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 431–442. Escom, Leiden.

    Google Scholar 

  • Wilde, D.J. (1964) Optimum Seeking Methods. Prentice-Hall, Englewood Cliffs, New Jersey.

    Google Scholar 

  • Wise, M., Cramer, R.D., Smith, D. and Exman, I. (1983) Progress in three-dimensional drug design: the use of realtime colour graphics and computer postulation of bioactive molecules in dylomms. In Quantitative Approaches to Drug Design (Proceedings of the 4th European Symposium on Chemical Structure-Biological Activity: Quantitative Approaches) (ed. J.C. Dearden), pp. 145–146. Elsevier, Amsterdam.

    Google Scholar 

  • Wold, S., Ruhe, A., Wold, H. and Dunn, W.J., III (1984a) The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses. SIAM Journal of Scientific and Statistical Computing, 5, 735–743.

    Article  Google Scholar 

  • Wold, S., Dunn, W.J., III and Hellberg, S. (1984b) Pattern recognition as a tool for drug design. In Drug Design: Fact or Fantasy (eds G. Jolles and K.R.H. Wooldridge), pp. 95–117. Academic Press, London.

    Google Scholar 

  • Wold, S., Johansson, E. and Cocchi, M. (1993) PLS — partial least-squares projections to latent structures. In 3D QSAR in Drug Design. Theory, Methods and Applications (ed. H. Kubinyi), pp. 523–550. Escom, Leiden.

    Google Scholar 

  • Wong, G., Kroehler, K.F., Skolnick, P., Gu, Z.Q., Ananthan, S., Schonholzer, P., Hunkeler, W., Zhang, W.J. and Cook, J.M. (1993) Synthesis and computer-assisted analysis of the structural requirements for selective, high-affinity ligand-binding to diazepam-insensitive benzodiazepine receptors. Journal of Medicinal Chemistry, 36, 1820–1830.

    Article  CAS  Google Scholar 

  • Wooldridge, K.R.H. (1984) The virtues of present strategies for drug discovery. In Drug Design: Fact or Fantasy (eds G. Jolles and K.R.H. Wooldridge), pp. 209–216. Academic Press, London.

    Google Scholar 

  • Wootton, R., Cranfield, R., Sheppey, G.C. and Goodford, P.J. (1975) Physicochemical-activity relationships in practice. 2. Rational selection of benzenoid substituents. Journal of Medicinal Chemistry, 18, 607–613002.

    Article  CAS  Google Scholar 

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Kim, K.H. (1995). Comparative molecular field analysis (CoMFA). In: Dean, P.M. (eds) Molecular Similarity in Drug Design. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-1350-2_12

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