Abstract
DNA is a promising construction material for the engineering of artificial nanostractured devices [1]. One of possible DNA implications in bionanodevices is detecting of metal ions. This possibility is based on the fact that metal ions may preferentially bind to definite DNA conformation and thus metal ion binding may give rise to transition between A-, B-, or Z-DNA [2]. Another approach based on utilizing the specific DNA sequence required to detect specific metals was reported recently [3]. In this method single-stranded DNA forms “pocket” that accepts only lead ions. Here we consider a potential DNA-based sensor detecting metal ions which is based on the phenomenon of DNA condensation.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Niemeyer, C. M.: Self-assembled nanostructures based on DNA: towards the development of nanobiotechnology, Curr. Opin. Chem. Biol 4 (2000), 609–618.
Daune, M.: Binding of divalent cations to DNA, Studia Biophysica 24 (1970), 287–297.
Li, J., Lu, Y.: A highly sensitive and selective catalitic DNA biosensor for lead ions, J. Am. Chem. Soc. 122 (2000), 10466–10467.
Jary, D., Sicorav, J.-L.: Cyclization of globular DNA. Implications for DNA-DNA interactions in vivo, Biochemistry 38 (1999), 3223–3227.
Sikorav, J.-L., Church, G. M.: Complementary recognition in condensed DNA: accelerated DNA renaturation, J. Mol. Biol 222 (1991), 1085–1108.
Chaperon, I., Sikorav J.-L.: Renaturation of condensed DNA studied through a decoupling scheme, Biopolymers 46 (1998), 195–200.
Chen, W. Y., Townes, T. M.: Molecular mechanism for silencing virally transduced genes involves histone deacetylation and chromatin condensation, Proc. Natl Acad. Sci. USA 97 (2000), 377–382.
Bloomfield, V. A.: DNA condensation by multivalent cations, Biopolymers 44 (1997) 269–284.
Mel’nikov, S. M., Sergeev, V. G., Yoshikawa, K.: Descrete coil-globule trànsition of large DNA induced by cationic surfactant, J. Am. Chem. Soc 117 (1995) 2401–2408.
Koltover, I., Wagner, K., Safinya, C. R.: DNA condensation in two dimensions, Proc. Natl. Acad. Sci. 97 (2000), 14046–14051.
Lando, D. Y., Teif, V. B.: Long-Range Interactions between Ligands Bound to a DNA Molecule Give Rise to Adsorption with the Character of Phase Transition of the First Kind, J. Biomol. Struct. & Dynam. 18 (2000), 903–911.
Nechipurenko, Y. D.: Binding of small molecules to nucleic acids that form ternary structure, Biophysics (Mosk.) 30 (1985), 231–232.
Scatchard, G.: The attraction of proteins for small molecules and ions, Ann. N.-Y. Acad. Sci. 51 (1949), 660–672.
Clement, R. M., Sturm, J. and Daune, M. P.: Interaction of metallic cations with DNA. IV. Specific binding of Mg2+ and Mn2+, Biopolymers 12 (1973), 405–421.
Reulen, J., Gabbay, E. J.: Binding of maganese (II) to DNA and the competitive effect of metal ions and organic cations. An electric paramagnetic resonance study, Biochemistry 14 (1975), 1230–1235.
Blagoi, Yu. P., Galkin, V. L., Gladchenko, G. O., Kornilova, S. V., Sorokin, V. A. and Shkorbatov, A. G.: Metal complexes of nucleic acids in solutions, Naukova Dumka, Kiev (in Russian) (1991).
Rifkind, J., Shin, Y. A., Heim, J. M., Eighorn, G. L.: Cooperative disordering of single-stranded polynucleotides through copper crosslinking, Biopolymers 15 (1976), 1879–1902.
Latt, S. A., Sober, H. A.: Protein-nucleic acid interactions. II. Oligopeptide-polyribonucleotide binding studies, Biochemistry 6 (1967), 3293–3306.
Frank-Kamenetskii, M. D., Karapetian, A. T.: To the theory of DNA melting in the presence of low molecular weight compounds, Molecular Biology (Mosk.) 6 (1972), 621–627.
Lando, D. Y., Krot, V. I., Frank-Kamenetskii, M. D.: Melting of DNA complexes with extended ligands, Molecular Biology (Mosk.) 9 (1975), 856–860.
Blagoi, Yu. P., Sorokin, V. A., Valeev, V. A.: Molecular Biology (Mosk.) 15 (1980), 595–605.
Clement, R. M., Sturm, J. and Daune, M. P.: Interaction of metallic cations with DNA VI. Specific binding of Mg++ and Mn++, Biopolymers 12 (1973), 405–421.
Strey, H. H., Podgornik, R., Rau, D. C., Parsegian, V. A.: DNA-DNA interactions, Curr. Opin. Stuct. Biol. 8 (1998), 309–313.
Kornilova, S., Hackl, E., Kapinos, L., Andrushchenco, V. Blagoi, Yu.: DNA interaction with biologically active metal ions. Cooperativity of metal ion binding at compacting of DNA, Acta. Biochim. Pol. 45 (1998), 107–117.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2001 Springer Science+Business Media Dordrecht
About this paper
Cite this paper
Teif, V.B., Lando, D.Y. (2001). DNA Condensation Caused by Ligand Binding May Serve as a Sensor. In: Elwenspoek, M. (eds) Sensor Technology 2001. Springer, Dordrecht. https://doi.org/10.1007/978-94-010-0840-2_27
Download citation
DOI: https://doi.org/10.1007/978-94-010-0840-2_27
Publisher Name: Springer, Dordrecht
Print ISBN: 978-94-010-3841-6
Online ISBN: 978-94-010-0840-2
eBook Packages: Springer Book Archive