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Hydrogen Bonds in Biological Structure and Mechanism

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Spectroscopy of Biological Molecules

Part of the book series: NATO ASI Series ((ASIC,volume 139))

Abstract

Hydrogen bonding in proteins and nucleic acids is reviewed. Examples are given of hydrogen bonds that are essential for the stability of structures, in biomolecular recognition, and in some special mechanisms.

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References

  1. Karle, I.L. 1978, Int. J. Quant. Chem. 5, p. 91.

    CAS  Google Scholar 

  2. Blake, C.C.F. and Oatley, S.J.,1977, Nature 268, p. 115.

    Google Scholar 

  3. Lewis, P.N., Momany, F.A. and Scheraga, H.A. 1973, Israel J. Chem. 11, p. 121.

    CAS  Google Scholar 

  4. Hadzi, D. and Detoni S., in: “The Chemistry of Acid Derivatives”, Suppl. B ( Patai, S., ed., Wiley, Chichester 1979 ), p. 241.

    Google Scholar 

  5. Katz, J.L. and Post, B. 1960, Acta Cryst. 13, p. 624.

    Article  CAS  Google Scholar 

  6. Donohue, J., in: “Structural Chemistry and Molecular Biology” ( Rich, A. and Davidson, N., eds., Freeman, London 1968 ), p. 458.

    Google Scholar 

  7. Hagler, A.T., Huler, E. and Lifson, S. 1974, J. Am. Chem. Soc. 96, p. 5319.

    Article  PubMed  CAS  Google Scholar 

  8. Hinton, J.F. and Harpool, R.D. 1977, J. Am. Chem. Soc. 99, p. 349.

    Article  CAS  Google Scholar 

  9. Hibberd, G.E. and Alexander, A.E. 1962, J. Phys. Chem. 66, p. 1854.

    Article  CAS  Google Scholar 

  10. Peters, D. and Peters, J. 1980, J. Mol. Struct. 68, p. 255.

    Article  CAS  Google Scholar 

  11. Boussard, G., Cung, M.T., Marraud, M. and Neel, J. 1974, J. Chem. Phys. 71, p. 1159.

    CAS  Google Scholar 

  12. Peters, D. and Peters, J. 1980, J. Mol. Struct. 64, p. 103

    Article  CAS  Google Scholar 

  13. Boussard, G., Marrana, M. and Aubry, A. 1979, Biopolymers 18, p. 1297.

    Article  CAS  Google Scholar 

  14. Birkstoft, J.J. and Blow, D.M. 1972, J. Mol. Biol. 68, p. 187.

    Article  Google Scholar 

  15. Peters, D. and Peters, J. 1980, J. Mol. Struct. 62, p. 229.

    Article  CAS  Google Scholar 

  16. Venkatachalam, C.M. 1968, Biopolymers 6, p. 1425.

    Article  PubMed  CAS  Google Scholar 

  17. Peters, D. and Peters, J. 1980, J. Mol. Struct. 68, p. 243.

    Article  Google Scholar 

  18. Prange, T. and Pascard, C. 1979. Acta Cryst. 35B, p. 1812.

    Article  Google Scholar 

  19. Zimmerman, S.S., Pottle, M.S., Nemethy. G. and Scheraga, H.A. 1977, Macromolecules 10, p. 1.

    Article  PubMed  CAS  Google Scholar 

  20. Urry, D.W. 1978, Int. J. Quant. Chem. Q.B.S. 5, p. 51.

    CAS  Google Scholar 

  21. Abu Khaled, Md., Rennyopolakrishnan, V. and Urry, D.W. 1976, J. Am. Chem. Soc. 98, p. 7547.

    Article  PubMed  CAS  Google Scholar 

  22. Urry, D.W. and Lony, M.M. 1976, CRC Crit. Rev. Biochem. 4, p. 1.

    Article  PubMed  CAS  Google Scholar 

  23. Prasad, B.V.V., Shamala, N., Nagaraj, R., Chandrasekharan, R. and Balaram, P. 1979, Biopolymers 18, p. 1635.

    Article  CAS  Google Scholar 

  24. Hendrickson, W.A., Love, W.E. and Karle, J. 1973, J. Mol. Biol. 74, p. 331.

    Article  PubMed  CAS  Google Scholar 

  25. Pauling, L. and Corey, R.B. 1951, Proc. Natl. Acad. Sci. USA 37, p. 729.

    Article  CAS  Google Scholar 

  26. Blundell, T.L. and Johnson, L.N., “Protein Crystallography” ( Academic Press, New York 1976 ), p. 35.

    Google Scholar 

  27. Abu Khaled, Md., Sugano, H. and Urry, D.W. 1979, Biochim. Biophys. Acta 577. p. 273.

    PubMed  CAS  Google Scholar 

  28. Watson, H.C. 1969, Progr. Stereochem. 4, p. 299.

    CAS  Google Scholar 

  29. Lewis, P.N., Momany, F.A. and Scharaga, H.A. 1973, Biochem. Biophys. Acta 303, p. 211.

    CAS  Google Scholar 

  30. Peters, D. and Peters, J. 1980, J. Mol. Struct. 69, p. 259.

    Article  Google Scholar 

  31. Lewis, P.N. and Scheraga H.A. 1971. Arch. Biochem. Biophys. 144, p. 576.

    Article  PubMed  CAS  Google Scholar 

  32. Takita, T., Oki, F., Maeda, K. and Umezawa, H. 1962, J. Anti- biot. Ser. A, 15, p. 46.

    CAS  Google Scholar 

  33. Mizuno, K., Nishio, S. and Shindo, Y. 1979, Biopolymers 18. p. 693.

    Article  CAS  Google Scholar 

  34. Chou, P.Y. and Fasman, G.D. 1974, Biochemistry 13, p. 211.

    Article  PubMed  CAS  Google Scholar 

  35. Lim, V.I. and Steinberg, S.V. 1981, FEBS Lett. 131, p. 203.

    Article  CAS  Google Scholar 

  36. Ramachandran, G.N., Bansal, M. and Bhatnagar, R.S. 1973, Biochim. Biophys. Acta 322, p. 166.

    CAS  Google Scholar 

  37. Miller, M.H., Nemethy, G. and Scheraga, H.A. 1980, Macromole-cules 13, p. 470, 914.

    Google Scholar 

  38. Grigera, J.R. and Berendsen, H.J.C. 1979, Biopolymers 18, p. 47.

    Article  CAS  Google Scholar 

  39. Hospital, M., Courseille, C., Leroy, F. and Roques, B.P. 1979, Biopolymers 18, p. 1141.

    Article  CAS  Google Scholar 

  40. Bhatnagar, R.S. and Rapaka, R.S., in: “Biomolecular Structure and Function” ( Agris, P.F., ed., Academic Press, New York 1978 ), p. 429.

    Google Scholar 

  41. Afinsen, C.B. and Scheraga, H.A. 1975, Adv. Protein Chem. 29, p. 205.

    Article  Google Scholar 

  42. Chothia, C. 1975, Nature 254, p. 304.

    Article  PubMed  CAS  Google Scholar 

  43. Finney, J.L. 1978, J. Mol. Biol. 119, p. 415.

    Article  PubMed  CAS  Google Scholar 

  44. Finney, J.L., Goodfellow, J.M. and Poole, P.L. 1982, in: “Structural Molecular Biology: Methods and Applications” (D.B. Davies, W. Saenger, and S.S. Danyluk, Eds., Plenum, New York ), p. 387.

    Google Scholar 

  45. Sakabe, N, Sazaki, K. and Sakabe, K. 1981, Acta Cryst. A37 (Suppl.), C 50.

    Google Scholar 

  46. Ptitsyn, O.B. 1981, FEBS Lett. 131, p. 197.

    Article  CAS  Google Scholar 

  47. Perutz, M.F. and Lehman, H. 1968, Nature 219, p. 902. Muirhead, P.H., Cox, J.M. and Goaman, L.C.O. 1968, Nature 219, p. 29. 47a. Arnott, S., Bond, P.J., Seising, E. and Smith, P.J. 1976, Nucl. Acid. Res. 3, p. 2459.

    Google Scholar 

  48. Voet, D. and Rich, A. 1970. Progr. Nucl. Acid Res. Mol. Biol. 10, p. 183.

    CAS  Google Scholar 

  49. Ts’o, P.O.P., in: “Basic Principles in Nucleic Acid Chemistry” ( Ts’o, P.O.P., ed., Academic Press, New York 1974 ), p. 517.

    Google Scholar 

  50. Kyogoku, Y., Lord, R.C. and Rich, A. 1969, Biochim. Biophys. Acta 179, p. 10.

    CAS  Google Scholar 

  51. Jardetzky. 0. and Roberts, G.C.K., “NMR in Molecular Biology” ( Academic Press, New York 1981 ), p. 190.

    Google Scholar 

  52. D’Albis, A., Wickens, M.P. and Gratzer, W.P. 1975, Biopolymers 14, p. 1425.

    Google Scholar 

  53. Egan, B.T., Nir, S., Rein, R. and Mac Elroy, R. 1978, Int. J. Quant. Chem. Q.B.S. 5. p. 433.

    CAS  Google Scholar 

  54. Yanson, I.K., Teplitzky, A.B. and Sukhodub, L.F. 1978, Bio-polymers 18, p. 1149.

    Google Scholar 

  55. Rein, R., in: “Intermolecular Interactions” ( Pullman, B., ed., J. Wiley and Sons. Chichester 1978 ), p. 307.

    Google Scholar 

  56. Wada, A., Yabuki, S. and Husimi, Y. 1980, CRC Crit. Rev. Bio- chem. 9, p. 87.

    Article  CAS  Google Scholar 

  57. Gotoh, O. and Tagashira, Y. 1981, Biopolymers 20. p. 1033.

    Article  CAS  Google Scholar 

  58. Stulz, J. and Ackerman, Th. 1983, Ber. Bunsenges. Phys. Chem. 87, p. 443, 447.

    Google Scholar 

  59. Clementi, E. and Corongiu, G. 1980, J. Chem. Phys. 72, p. 3979.

    Article  CAS  Google Scholar 

  60. Langlet, J., Giessner-Prettre, G., Pullman, B., Claverie, P. and Piazzola, D. 1980, Int. J. Quant. Chem. 18, p. 42.

    Article  Google Scholar 

  61. Shibata, M., Kieber-Emmors, T. and Rein, R. 1983, Int. J. Quant. Chem. 23, p. 1283.

    Article  CAS  Google Scholar 

  62. Clementi, E. and Corongiu, G. 1982, Int. J. Quantum Chem. Q.B.S. 9, p. 213.

    CAS  Google Scholar 

  63. Falk, M., Hartman, K.A.,Jr. and Lord, R.C. 1963, J. Am. Chem. Soc. 85, p. 391.

    Article  CAS  Google Scholar 

  64. Dickerson, R.E., Drew, H.R., Conner, B.N., Wing, R.M., Fratini, A.Y. and Kopka, M.L. 1982, Science 216, p. 475.

    Article  PubMed  CAS  Google Scholar 

  65. Bolton, P.H. and Kearns, D.R. 1979, J. Am. Chem. Soc. 101, p. 479.

    Article  CAS  Google Scholar 

  66. Löwdin, P.O. 1964, Rev. Mod. Phys. 35, p. 724.

    Article  Google Scholar 

  67. Clementi, E., Mehl, J. and von Niessen, W. 1971, J. Chem. Phys. 54, p. 508.

    Article  CAS  Google Scholar 

  68. Sygula, A. and Buda, A. 1983, J. Mol. Struct. 92, p. 267. Palmer, M.H., Wheeler, J.R., Kwiatkowski, J.S. and Lesyng, B. ibid, p. 283. Mandragon, A. and Ortega Blake, I. 1982, Int. J. Quant. Chem. 23, p. 89 and references therein.

    Google Scholar 

  69. Nagaoka, S.. Hirota, N.. Matsushita. T. and Nishimoto. K. 1982, Chem. Phys. Lett. 92, p. 498.

    Article  CAS  Google Scholar 

  70. Nagaoka. S., Terao, T.. Imashiro, F.. Saika, A. and Hirota,N. 1981, Chem. Phys. Lett. 80, p. 580.

    Article  CAS  Google Scholar 

  71. Maranon, J., Grinberg. H. and Nudelman, N.S. 1982, Int. J. Quant. Chem. 22, p. 69.

    Article  CAS  Google Scholar 

  72. Kothekar, V., Bolis. G. and Rein, R. 1983. Int. J. Quant. Chem. 23, p. 1295.

    Article  CAS  Google Scholar 

  73. Weber, G. 1975, Adv. Protein Chem. 29, p. 61.

    Google Scholar 

  74. Quiocho, F.A. and Lipscomb, W.N. 1971, Adv. Protein Chem. 25, p. 1.

    Article  PubMed  CAS  Google Scholar 

  75. Nakagawa. S. and Umeyama, H. 1978. J. Am. Chem. Soc. 100, p. 7716.

    Article  Google Scholar 

  76. Riordan. H.F., McElvany. K.D. and Borders, Jr, C.R. 1977. Science 195, p. 884.

    Article  Google Scholar 

  77. James, M.N.G. 1980. Canad. J. Biochem. 58, p. 251.

    CAS  Google Scholar 

  78. Kester. W.R. and Matthews. B.W. 1977, Biochemistry 16, p. 2506.

    Article  Google Scholar 

  79. Pai, E.E., Schirmer, R.H. and Schulz, G.E., in: “Structure of Complexes between Biopolymers and Low Molecular Weight Mole-cules” (Bartmann. W. and Snatzke. G., eds.. Wiley, Chichester 1982 ). p. 39.

    Google Scholar 

  80. Scheraga, H.A.. Pincus. M.R. and Burke. K.A., in: ibid, p.53.

    Google Scholar 

  81. Wippf, G., Dearing. A.. Weiner. P.K., Blanley, J.M. and Koll-man, P.A. 1983. J. Am. Chem. Soc. 105. p. 997.

    Article  Google Scholar 

  82. Dower, S.K. and Dwek. R.A., in: “Biomolecular Structure and Function” ( Agris, P.F., ed.. Academic Press, New York 1978 ), p. 295.

    Google Scholar 

  83. Šolmajer, T., Lukovits. I. and Hadzi, D. 1982, J. Med. Chem. 25, p. 1413.

    Article  PubMed  Google Scholar 

  84. Blake, C.F., Period. Biol., in print.

    Google Scholar 

  85. Blaney, J.M., Weiner, P.K., Dearing, A., Kollman, P.A., Jorgensen, E.C., Oatley, S.J., Burridge, J.M. and Blake. C.F. 1982, J. Am. Chem. Soc. 104. p. 6324.

    Article  Google Scholar 

  86. Schimmel, P. 1979, Adv. Enzymol. 49, p. 187.

    PubMed  CAS  Google Scholar 

  87. Buck, F., Ruterjans. H., Kaptein. R. and Beyreutter, K. 1980, Proc. Natl. Acad. Sci. USA 77, p. 5145.

    Article  PubMed  CAS  Google Scholar 

  88. Klevan, L. and Crothers, D.M. 1979, Biopolymers 18, p. 1029.

    Article  CAS  Google Scholar 

  89. Bolton, P.H. and Kearns, D.R. 1978, Nucl. Acid Res. 5, p. 1315.

    Article  CAS  Google Scholar 

  90. Blow, D.M., Birktoft, J.J. and Hartley, B.S. 1969, Nature 221, p. 337.

    Article  PubMed  CAS  Google Scholar 

  91. Robbilard, G. and Schulman, R.G. 1974, J. Mol. Biol. 86, p. 519.

    Article  Google Scholar 

  92. Bachovchin, W.W. and Roberts. J.D. 1978, J. Am. Chem. Soc. 93, p. 8149.

    Google Scholar 

  93. Umeyama, H. and Nakagawa, S. 1979, Chem. Pharm. Bull. 27, p. 1524.

    CAS  Google Scholar 

  94. Naray-Szabo, G., Kapur, A., Mezey, P.G. and Polgar, L. 1982, J. Mol. Struct. THE0CHEM 90. p. 137.

    Article  Google Scholar 

  95. Zundel, G. 1978, J. Mol. Struct. 45, p. 55.

    Article  CAS  Google Scholar 

  96. Van Duynen, P.Th., Tholl, B.Th. and Hoi, W.G.J. 1979, Bio- phys. Chem. 9, p. 273.

    Google Scholar 

  97. Ladik, J., Suhai, S. and Seel, M. 1978, Int. J. Quant. Chem. Q.B.S. 5, p. 35.

    CAS  Google Scholar 

  98. Kertesz, M., Koller, J. and Azman. A. 1977, Nature 266, p. 278.

    Article  PubMed  CAS  Google Scholar 

  99. Behi, J., Bone, S., Morgan, H. and Pethig, R. 1982, Int. J. Quant. Chem. Q.B.S. 9, p. 367.

    CAS  Google Scholar 

  100. Nagle, J.F. and Morowitz, H.J. 1978, Proc. Natl. Acad. Sci. USA 75, p. 298.

    Article  CAS  Google Scholar 

  101. Knapp, E.W., Schulten, K. and Schulten, Z. 1980, Chem. Phys. 46, p. 215.

    Article  CAS  Google Scholar 

  102. Onsager, L.. in: “The Neurosciences” ( Schmitt, F.O., ed., Academic Press, New York 1975 ), p. 493.

    Google Scholar 

  103. Scheiner, S. 1981, J. Am. Chem. Soc. 103, p. 315.

    Article  CAS  Google Scholar 

  104. Merz, H. and Zundel, G. 1981. Biochem. Biophys. Res. Commun. 101, p. 540.

    Article  CAS  Google Scholar 

  105. Ovchinikov, Yu. A. 1982. FEBS Lett. 148, p. 179.

    Article  Google Scholar 

  106. Leclercq. J.-M., Dupuis, P. and Sandorfy. C. 1982, Croat. Chem. Acta 55, p. 105.

    Google Scholar 

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Hadži, D. (1984). Hydrogen Bonds in Biological Structure and Mechanism. In: Sandorfy, C., Theophanides, T. (eds) Spectroscopy of Biological Molecules. NATO ASI Series, vol 139. Springer, Dordrecht. https://doi.org/10.1007/978-94-009-6490-7_4

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  • DOI: https://doi.org/10.1007/978-94-009-6490-7_4

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