Skip to main content

Pea chloroplast tRNALys(UUU) gene: transcription and analysis of an intron-containing gene

  • Chapter
  • 194 Accesses

Abstract

The pea chloroplast trnK gene which encodes tRNALys(UUU) was sequenced. TrnK is located 210 bp upstream from the promoter of psbA and immediately downstream from the 3′-end of rbcL. The gene is transcribed from the same DNA strand as psbA and rbcL. A 2447 bp intron with class II features is located in the trnK anticodon loop. The intron contains a 506 amino acid open reading frame which could encode an RNA maturase. The primary transcript of trnK is 2.9 kb long; its 5′-end was identified as a site of transcription initiation by in vitro transcription experiments. The 5′-terminus is adjacent to DNA sequences previously identified as transcription promoter elements. The most abundant trnK: transcript is 2.5 kb long with termini corresponding to the 5′ and 3′ ends of the trnK exons. Intron specific RNAs were not detected. This suggests that RNA processing which produces tRNALys leads to rapid degradation of intron sequences.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   259.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   329.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Bonitz S, Coruzzi G, Thalenfeld B, Tzagoloff A and Macino G (1980) Assembly of the mitochondrial system: structure and nucleotide sequence of the gene coding for subunit I of yeast cytochrome oxidase. J Biol Chem 225: 11927–11941

    Google Scholar 

  • Bonnard G, Michel F, Weil JH and Steinmetz A (1984) Nucleotide sequence of the split tRNALeu(AAA) gene from Vicia faba chloroplasts: evidence for structural homologies of the chloroplast tRNALeu intron with the intron from the autosplicable Tetrahymena ribosomal RNA precursor. Mol Gen Genet 194: 330–336

    Article  CAS  Google Scholar 

  • Bonnard G, Weil JH and Steinmetz A (1985) The intragenic region between Vicia faba chloroplast tRNALeu(CAA) and tRNALeu(UAA) genes contains a partial copy of the split tRNALeu(UAA) gene. Curr Genet 9: 417–422

    Article  PubMed  CAS  Google Scholar 

  • Boyer SK and Mullet JE (1986) Characterization of P. sativum chloroplast psbA transcripts produced in vivo, in vitro and in E. coli. Plant Mol Biol 6: 229–43

    Article  CAS  Google Scholar 

  • Bujard H (1980) The interactions of E. coli RNA polymerase with promoters. Trends Biochem Sci 5: 274–278

    Article  CAS  Google Scholar 

  • Carignani G, Groudinsky O, Frezza D, Schiaron E, Bergantino E and Slonimski PP (1983) An RNA maturase is encoded by the first intron of the mitochondrial gene for the subunit I of cytochrome oxidase in S. cerevisiae. Cell 35: 733–742

    Article  PubMed  CAS  Google Scholar 

  • Chu NM, Shapiro DR, Oishi KK and Tewari KK (1985) Distribution of transfer RNA genes in the Psium sativum chloroplast DNA. Plant Mol Biol 4: 65–79

    Article  CAS  Google Scholar 

  • Crouse, EJ, Mubumbila M, Stummann BM, Bookjans G, Mickalowsi C, Bohnert HJ, Weil J-H and Henningsen KW (1986) Divergence of chloroplast gene organization in three legumes. Plant Mol Biol 7: 143–147

    Article  CAS  Google Scholar 

  • Deno H, Kato A, Shinozaki K and Sigiura M (1982) Nucleotide sequences of tobacco chloroplast genes tRNAMet and tRNAVal(UAC): the tRNAVal(UAC) gene contains a long intron. Nuc Acids Res 10: 7511–7521

    Article  CAS  Google Scholar 

  • Deno H and Sugiura M (1984) Chloroplast tRNAGly gene contains a long intron in the D stem: nucleotide sequences of tobacco chloroplast genes for tRNAGly(UCC) and tRNAArg(UCU). Proc Natl Acad Sci USA 81: 405–408

    Article  PubMed  CAS  Google Scholar 

  • Gauss DH and Sprinzel M (1984) Compilation of tRNA sequences. Nuc Acids Res 12: r1–r131

    Article  Google Scholar 

  • Gruissem W, Elsner-Menzelc, Latshaw S, Narita JO, Shaffer MA and Zurawski G (1987) A subpopulation of spinach chloroplast tRNA genes does not require upstream promoter elements for transcription. Nuc Acids Res 14: 7541–7556

    Article  Google Scholar 

  • Gruissem W and Zurawski G (1985) Identification and mutational analysis of the promoter for a spinach chloroplast transfer RNA gene. EMBO J 4: 1637–1644

    PubMed  CAS  Google Scholar 

  • Hallick RB, Hollingsworth M J and Nickoloff JA (1984) Transfer RNA genes of Euglena gracilis chloroplast DNA. Plant Mol Biol 3: 169–175

    Article  CAS  Google Scholar 

  • Hanley-Bowdoin L and Chua N-H (1987) Chloroplast promoters. Trends Biochem Sci 12: 67–70

    Article  CAS  Google Scholar 

  • Koch W, Edwards K and Kössel H (1981) Sequencing of the 16S–23S spacer in a ribosomal RNA Operon of Zea mays chloroplast DNA reveals two split tRNA genes. Cell 25: 203–213

    Article  PubMed  CAS  Google Scholar 

  • Krebbers E, Steinmetz A and Bogorad L (1984) DNA sequences for the Zea mays tRNA genes tV-UAC and tS-UGA: tV-UAC contains a large intron. Plant Mol Biol 3: 13–20

    Article  CAS  Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular Cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Messing J (1980) New M13 vectors for cloning. In: Colowich SP, and Kaplan NO (eds) Methods in Enzymology, Vol 101C. Academic Press, New York, pp 20–77

    Google Scholar 

  • Michel F and Dujon B (1983) Conservation of RNA secondary structures in two intron families including mitochondrial, chloroplast and nuclear-encoded members EMBO J 2: 33–38

    PubMed  CAS  Google Scholar 

  • Mullet JE, Orozco EM, Chua N-H (1985) Multiple transcripts for higher plant rbcL and atpB genes and localization of the transcription initiation site of rbcL gene. Plant Mol Biol 4: 39–54

    Article  CAS  Google Scholar 

  • Neuhaus H and Link G (1987) The chloroplast tRNALys(UUU) gene from mustard (Sinapsis alba) contains a class II intron potentially coding for a maturase polypeptide. Curr Genet 11: 251–257

    Article  PubMed  CAS  Google Scholar 

  • Ogden RC, Knapp G, Peebles CL, Kang HS, Beckmann JS, Johnson PF, Fuhrman SA and Abelson JN (1980) In Soll D, Abelson JN and Schimmel PR (eds) Transfer RNA: Biological Aspects, pp 173–190, Cold Spring Harbor, NY, Cold Spring Harbor Laboratory

    Google Scholar 

  • Osiewacz HD and Esser K (1984) The mitochondrial plasmid of Podospora anserina: A mobile intron of a mitochondrial gene. Curr Genet 8: 299–305

    Article  CAS  Google Scholar 

  • Schmelzer C, Schmidt C, May K and Schweyen RJ (1983) Determination of functional domains in intron b/1 of yeast mitochondrial RNA by studies of mitochondrial mutations and a nuclear suppressor. EMBO J 2: 2047–2052

    PubMed  CAS  Google Scholar 

  • Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayash T, Zaita N, Chunwongse J, Obokato J, Yamaguchi-Shinozaki K, Ohto C, Torozawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusada J, Takaiwa F, Kato A, Tohdoh N, Shimada H and Sugiura M (1986) The complete nucleotide sequence of the tobacco chloroplast genome, its gene organization and expression EMBO J 5: 2043–2049.

    PubMed  CAS  Google Scholar 

  • Steinmetz A, Gubbins EJ and Bogorad L (1982) The anticodon of the maize chloroplast gene for tRNALeu(UAA) is split by a large intron. Nuc Acids Res 10: 3027–3037

    Article  CAS  Google Scholar 

  • Sugita M, Shinozaki K and Sugiura M (1985) Tobacco chloroplast tRNALys(UUU) gene contains a 2.5-kilobase pair intron: An open reading frame and a conserved boundary sequence in the intron. Proc Natl Acad Sci 82: 3557–3561

    Article  PubMed  CAS  Google Scholar 

  • Van der Veen R, Arnberg AC, Van der Horst G, Bonen L, Tabak HF and Grivell LA (1986) Excised group II introns in yeast mitochondria are lariats and can be formed by self splicing in vitro. Cell 44: 225–234

    Article  PubMed  Google Scholar 

  • Wakasugi T, Ohme M, Shinozaki K and Sugiura M (1986) Structures of tobacco chloroplast genes for tRNAIle(CAU), tRNALeu(CAA), tRNACys(GCA), tRNASer(UGA), and tRNAThr(CGU): A compilation of tRNA genes from tobacco chloroplasts. Plant Mol Biol 7: 385–392

    Article  CAS  Google Scholar 

  • Whitfield PR and Bottomley W (1983) Organization and structure of chloroplast genes. Ann Rev Plant Physiol 34: 279–310

    Article  Google Scholar 

  • Yamaguchi-Shinozaki K, Shinozaki K and Sugiura M (1987) Processing of precursor tRNAs in a chloroplast lysate. FEBS Lett 215: 132–136

    Article  CAS  Google Scholar 

  • Yamada K, Shinozaki K and Sugiura M (1986) DNA sequences of tobacco chloroplast genes for tRNASer(GAA), tRNAThr(UGU), tRNALeu(UAA): the tRNALeu gene contains a 503 bp intron. Plant Mol Biol 6: 193–199

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1988 Kluwer Academic Publishers

About this chapter

Cite this chapter

Boyer, S.K., Mullet, J.E. (1988). Pea chloroplast tRNALys(UUU) gene: transcription and analysis of an intron-containing gene. In: Govindjee (eds) Molecular Biology of Photosynthesis. Springer, Dordrecht. https://doi.org/10.1007/978-94-009-2269-3_4

Download citation

  • DOI: https://doi.org/10.1007/978-94-009-2269-3_4

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-7517-6

  • Online ISBN: 978-94-009-2269-3

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics