Skip to main content

Small Things, Big Consequences: Microbiological Perspectives on Biology

  • Chapter
  • First Online:
The Philosophy of Biology

Abstract

Microbiology is a broad-ranging area of research that has developed out of 400 years of observation, analysis and theorizing about microscopic life forms. The study of microbes has not yet received a great deal of attention from philosophy of biology, but there are many reasons why it should. In this chapter, we outline the value of thinking philosophically about microbes and microbiology via a discussion of concepts of life, biological individuals and levels of selection. These discussions will show how taking a philosophical perspective on microbiological studies can enrich not only microbiology but also biology in general and its philosophy. We conclude by drawing out some of the implications of philosophical perspectives on microbiology for educational strategies in the teaching of biology.

Michael J. Duncan, Pierrick Bourrat and Jennifer DeBerardinis contributed equally to this chapter.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    For clarity’s sake, we emphasize here that our claim about biological individuals existing at the group level is distinct from the claim made by Ghiselin (1974) and Hull (1976) that species are individuals. The individuals discussed in our paper are functional individuals, organisms, or units of selection, whereas the individuals Ghiselin and Hull care about are merely spatiotemporally localized entities (Wilson and Sober 1989).

References

  • Amsterdamska, O. 1987. Medical and biological constraints: Early research on variation in bacteriology. Social Studies of Science 17: 657–687.

    Article  Google Scholar 

  • Archibald, J.M. 2011. Origin of eukaryotic cells: 40 years on. Symbiosis 54: 69–86.

    Article  Google Scholar 

  • Axelrod, R. 1984. The evolution of cooperation. New York: Basic.

    Google Scholar 

  • Barrow, J.R., M.E. Lucero, I. Reyes-Vera, and K.M. Havstad. 2008. Do symbiotic microbes have a role in plant evolution, performance and response to stress? Communicative and Integrative Biology 1(1): 69–73.

    Article  Google Scholar 

  • Beijerinck, M.W. 1900–1901. On different forms of hereditary variation in microbes. Proc K Ned Akad Wet 3: 352–365. www.dwc.knaw.nl/DL/publications/PU00014384.pdf . Accessed 19 Dec 2011.

  • Benner, S.A. 2010. Defining life. Astrobiology 10(10): 1021–1030.

    Article  Google Scholar 

  • Bonner, J.T. 1998. The origins of multicellularity. Integrative Biology 1: 27–36.

    Article  Google Scholar 

  • Bonner, J.T. 2009. The social amoebae: The biology of cellular slime molds. Princeton: Princeton University Press.

    Google Scholar 

  • Brigandt, I., and A.C. Love. 2012. Reductionism in biology. Stanford Encyclopedia of Philosophy, ed. N. Zalta. http://plato.stanford.edu/entries/reduction-biology/.

  • Brock, T.D. 1961. Milestones in microbiology. Englewood Cliffs: Prentice-Hall.

    Google Scholar 

  • Bull, J.J. 1994. Virulence. Evolution 48(5): 1423–1437.

    Article  Google Scholar 

  • Bulloch, W. 1938. The history of bacteriology. Oxford: Oxford University Press.

    Google Scholar 

  • Buss, L.W. 1987. The evolution of individuality. Princeton: Princeton University Press.

    Google Scholar 

  • Cavicchioli, R. (ed.). 2007. Archaea: Molecular and cellular biology. Washington, DC: ASM.

    Google Scholar 

  • Clarke, E. 2010. The problem of biological individuality. Biological Theory 5: 312–325.

    Article  Google Scholar 

  • Clarke, E. 2011. Plant individuality and multilevel selection theory. In Major transitions in evolution revisited, ed. B. Calcott and K. Sterelny, 227–250. Cambridge, MA: MIT Press.

    Google Scholar 

  • Claverie, J. 2010. Mimivirus: The emerging paradox of quasi-autonomous viruses. Trends in Genetics 26(10): 431–437.

    Article  Google Scholar 

  • Claverie, J.-M., and C. Abergel. 2009. Mimivirus and its virophage. Annual Review of Genetics 43: 49–66.

    Article  Google Scholar 

  • Cleland, C.E., and C.F. Chyba. 2002. Defining ‘life’. Origins of Life and Evolution of the Biosphere 32: 387–393.

    Article  Google Scholar 

  • Crespi, B.J. 2001. The evolution of social behavior in microorganisms. Trends in Ecology & Evolution 16(4): 178–183.

    Article  Google Scholar 

  • Dawkins, R. 1976. The selfish gene. Oxford: Oxford University Press.

    Google Scholar 

  • Dawkins, R. 1982. The extended phenotype: The long reach of the gene. New York: Oxford University Press.

    Google Scholar 

  • Demerec, M. 1946. Minutes of the 23rd annual meeting of the Long Island Biological Association, July 30th. Available on request from Cold Spring Harbor Library Archives. http://library.cshl.edu/archives/. Accessed 19 Dec 2011.

  • Dietrich, L.E.P., M.M. Tice, and D.K. Newman. 2006. The co-evolution of life and Earth. Current Biology 16: R395–R400.

    Article  Google Scholar 

  • Drews, G. 2000. The roots of microbiology and the influence of Ferdinand Cohn on microbiology of the 19th century. FEMS Microbiology Reviews 24: 225–249.

    Article  Google Scholar 

  • Dupré, J., and M.A. O’Malley. 2009. Varieties of living things: Life at the intersection of lineage and metabolism. Philosophy and Theory in Biology 1. http://hdl.handle.net/2027/spo.6959004.0001.003. Accessed 19 Dec 2011.

  • Ereshefsky, M. 2010. Microbiology and the species problem. Biology and Philosophy 25: 553–568.

    Article  Google Scholar 

  • Falkowski, P.G., T. Fenchel, and E.F. DeLong. 2008. The microbial engines that drive Earth’s biogeochemical cycles. Science 320: 1034–1039.

    Article  Google Scholar 

  • Farley, J. 1974. The spontaneous generation controversy from Descartes to Oparin. Baltimore: Johns Hopkins.

    Google Scholar 

  • Fierer, N., and J.T. Lennon. 2011. The generation and maintenance of diversity in microbial communities. American Journal of Botany 98: 439–448.

    Article  Google Scholar 

  • Folse, H.J., and J. Roughgarden. 2010. What is an individual organism? A multilevel selection perspective. The Quarterly Review of Biology 85(4): 447–472.

    Article  Google Scholar 

  • Forterre, P. 2010. Defining life: The virus viewpoint. Origins of Life and Evolution of the Biosphere 40(2): 151–160.

    Article  Google Scholar 

  • Frank, S.A. 1996. Host control of symbiont transmission: The separation of symbionts into germ and soma. American Naturalist 148(6): 1113–1124.

    Article  Google Scholar 

  • Friedmann, H. 2004. From ‘Butyribacterium’ to ‘E. coli’: An essay on unity in biochemistry. Perspectives in Biology and Medicine 47: 47–66.

    Article  Google Scholar 

  • Ghiselin, M.T. 1974. A radical solution to the species problem. Systematic Zoology 23: 536–544.

    Article  Google Scholar 

  • Gould, S.J. 1994. The evolution of life on Earth. Scientific American 271: 84–91.

    Article  Google Scholar 

  • Gould, S.J., and E.A. Lloyd. 1999. Individuality and adaptation across levels of selection: How shall we name and generalize the unit of Darwinism? Proceedings of the National Academy of Sciences of the United States of America 96(21): 11904–11909.

    Article  Google Scholar 

  • Gradmann, C. 2000. Isolation, contamination, and pure culture: Monomorphism and polymorphism of pathogenic microorganisms as research problem 1860–1880. Perspectives on Science 9: 147–172.

    Article  Google Scholar 

  • Hamilton, W.D. 1964. The genetical evolution of social behaviour. I. Journal of Theoretical Biology 7(1): 1–16.

    Article  Google Scholar 

  • Handelsman, J. 2002. Microbiology as a change agent in science education. ASM News 68: 163–167.http://newsarchive.asm.org/apr02/feature1.asp. Accessed 19 Dec 2011.

  • Hooke, R. 1665. Micrographia: Or some physiological descriptions of minute bodies made by magnifying glasses with observations and inquiries thereupon. London: Martyn & Allestry. http://www.gutenberg.org/ebooks/15491.

  • Hull, D.L. 1976. Are species really individuals? Systematic Zoology 25: 174–191.

    Article  Google Scholar 

  • Ingraham, J.L. 2010. March of the microbes: Sighting the unseen. Cambridge: Belknap.

    Google Scholar 

  • Joyce, G.F. 1995. The RNA world: Life before DNA and protein. In Extra-terrestrials: Where are they? ed. B. Zuckerman and M.H. Hart. Cambridge, MA: Cambridge University Press.

    Google Scholar 

  • Kasting, J.F. 2005. Methane and climate during the Precambrian era. Precambrian Research 137: 119–129.

    Article  Google Scholar 

  • Kerr, B., C. Neuhauser, B.J.M. Bohannan, and A.M. Dean. 2006. Local migration promotes competitive restraint in a host–pathogen ‘tragedy of the commons’. Nature 442: 75–78.

    Article  Google Scholar 

  • King, N. 2004. The unicellular ancestry of animal development. Developmental Cell 7: 313–325.

    Article  Google Scholar 

  • Lederberg, J. 1987. Genetic recombination in bacteria: A discovery account. Annual Review of Genetics 21: 23–46.

    Article  Google Scholar 

  • Lwoff, A. 1967. Principles of classification and nomenclature of viruses. Nature 215(5096): 13–14.

    Article  Google Scholar 

  • Madigan, M.T., J.M. Martinko, P.V. Dunlap, and D.P. Clark. 2008. Brock biology of microorganisms, 12th ed. San Francisco: Pearson/Benjamin Cummings.

    Google Scholar 

  • Margulis, L. 1970. Origin of eukaryotic cells. Yale: Yale University Press.

    Google Scholar 

  • Maynard Smith, J. 1982. Evolution and the theory of games. New York: Cambridge University Press.

    Book  Google Scholar 

  • Maynard Smith, J., and E. Szathmáry. 1995. The major transitions in evolution. New York: Freeman.

    Google Scholar 

  • Michod, R.E., and D. Roze. 2001. Cooperation and conflict in the evolution of multicellularity. Heredity 86: 1–7.

    Article  Google Scholar 

  • Mitchell, S.D. 2009. Unsimple truths: Science, complexity, and policy. Chicago: University of Chicago Press.

    Book  Google Scholar 

  • Moreira, D., and P. López-García. 2009. Ten reasons to exclude viruses form the tree of life. Nature Reviews Microbiology 7: 306–311.

    Google Scholar 

  • Moya, A., J. Peretó, R. Gil, and A. Latorre. 2008. Learning how to live together: Genomic insights into prokaryote-animal symbioses. Nature Reviews Genetics 9: 218–229.

    Article  Google Scholar 

  • Nee, S. 2004. More than meets the eye. Nature 429: 804–5.

    Article  Google Scholar 

  • Newman, D.K., and J.F. Banfield. 2002. Geomicrobiology: How molecular scale interactions underpin biogeochemical systems. Science 296: 1071–1077.

    Article  Google Scholar 

  • Nowak, M.A., C.E. Tarnita, and E.O. Wilson. 2010. The evolution of eusociality. Nature 466: 1057–1062.

    Article  Google Scholar 

  • Okasha, S. 2006. Evolution and the levels of selection. New York: Oxford University Press.

    Book  Google Scholar 

  • O’Malley, M.A., and J. Dupré. 2009. Philosophical themes in metagenomics. In Metagenomics: Theory, methods and applications, ed. D. Marco. Norwich: Horizon.

    Google Scholar 

  • O’Malley, M.A., and K. Stotz. 2011. Intervention, integration and translation in obesity research: Genetic, developmental and metaorganismal approaches. Philosophy, Ethics, and Humanities in Medicine 6: 2. doi:10.1186/1747-5341-6-2.

  • Osteryoung, K.W., and J. Nunnari. 2003. The division of endosymbiotic organelles. Science 302: 1698–1704.

    Article  Google Scholar 

  • Owen, J. 2008. Virus-infecting virus fuels definition of life debate. National Geographic News. http://news.nationalgeographic.com/news/2008/08/080822-giant-virus-html. Accessed 19 Dec 2011.

  • Pearson, H. 2008. ‘Virophage’ suggests viruses are alive. Nature 454: 677.

    Article  Google Scholar 

  • Pedersen, K. 2000. Exploration of deep intraterrestrial microbial life: Current perspectives. FEMS Microbiology Letters 185: 9–16.

    Article  Google Scholar 

  • Queller, D.C., and J.E. Strassmann. 2009. Beyond society: The evolution of organismality. Philosophical Transaction of the Royal Society of London. Series B: Biological Sciences 364: 3143–3155.

    Article  Google Scholar 

  • Rainey, P.B., and B. Kerr. 2010. Cheats as first propagules: A new hypothesis for the evolution of individuality during the transition from single cells to multicellularity. Bioessays 32(10): 872–880.

    Article  Google Scholar 

  • Rainey, P.B., and K. Rainey. 2003. Evolution of cooperation and conflict in experimental bacterial populations. Nature 425: 72–74.

    Article  Google Scholar 

  • Raoult, D. 2005. The journey from Rickettsia to Mimivirus. ASM News 71: 278–284.

    Google Scholar 

  • Raoult, D., and P. Forterre. 2008. Redefining viruses: Lessons from mimivirus. Nature Reviews Microbiology 6(4): 315–319.

    Article  Google Scholar 

  • Ratcliff, M.J. 2009. The quest for the invisible: Microscopy in the enlightenment. Farnham: Ashgate.

    Google Scholar 

  • Ruiz-Saenz, J., and J.D. Rodas. 2010. Viruses, virophages, and their living nature. Acta Virologica 54: 85–90.

    Article  Google Scholar 

  • Sagan, L. 1967. On the origin of mitosing cells. Journal of Theoretical Biology 14(3): 225–274.

    Article  Google Scholar 

  • Santelices, B. 1999. How many kinds of individual are there? Trends in Ecology & Evolution 14: 152–155.

    Article  Google Scholar 

  • Savage, D.C. 1977. Microbial ecology of the gastrointestinal tract. Annual Review of Microbiology 31: 107–133.

    Article  Google Scholar 

  • Shapiro, J. 1998. Thinking about bacterial populations as multicellular organisms. Annual Review of Microbiology 52: 81–104.

    Article  Google Scholar 

  • Shimkets, L.J. 1990. Social and developmental biology of the myxobacteria. Microbiology and Molecular Biology Reviews 54: 473–501.

    Google Scholar 

  • Singh, B.K., R.D. Bardgett, P. Smith, and D.S. Reay. 2010. Microorganisms and climate change: Terrestrial feedbacks and mitigation options. Nature Reviews Microbiology 8: 779–790.

    Article  Google Scholar 

  • Southam, G., L.J. Rothschild, and F. Westall. 2007. The geology and habitability of terrestrial planets: Fundamental requirements for life. Space Science Review 129: 7–34.

    Article  Google Scholar 

  • Sterelny, K., and P.E. Griffiths. 1999. Sex and death: An introduction to philosophy of biology. Chicago: University of Chicago Press.

    Google Scholar 

  • Strassmann, E., and D.C. Queller. 2010. The social organism: Congresses, parties, and committees. Evolution 64(3): 605–616.

    Article  Google Scholar 

  • Strom, S.L. 2008. Microbial ecology of ocean biogeochemistry: A community perspective. Science 320: 1043–1045.

    Article  Google Scholar 

  • Summers, W.C. 1991. From culture as organism to organism as cell: Historical origins of bacterial genetics. Journal of the History of Biology 24: 171–190.

    Article  Google Scholar 

  • Suttle, C.A. 2007. Marine viruses – Major players in the global ecosystem. Nature Reviews Microbiology 5: 801–812.

    Article  Google Scholar 

  • Theunissen, B. 1996. The beginnings of the ‘Delft tradition’ revisited: Martinus W. Beijerinck and the genetics of microorganisms. Journal of the History of Biology 29: 197–228.

    Article  Google Scholar 

  • Thurber, A.R., W.J. Jones, and K. Schnabel. 2011. Dancing for food in the deep sea: Bacterial farming by a new species of yeti crab. PLoS One 6(11): e26243.

    Article  Google Scholar 

  • van der Giezen, M. 2011. Mitochondria and the rise of eukaryotes. BioScience 61: 594–601.

    Article  Google Scholar 

  • van Leeuwenhoek [Leuwenhock], A. 1694. Containing the history of the generation of an insect, by him called, the wolf. With observations on insects bred in rain-water, in apples, cheese, etc. Philosophical Transactions of the Royal Society of London 18 :194–200.

    Google Scholar 

  • van Veelen, M., J. Garcia, M.W. Sabelis, and M. Egas. 2011. Group selection and inclusive fitness are not equivalent; The Price equation vs. models and statistics. Journal of Theoretical Biology. doi:10.1016/j.jtbi.2011.07.025.

  • Velicer, G.J. 2003. Social strife in the microbial world. Trends in Microbiology 11(7): 330–337.

    Article  Google Scholar 

  • Wainwright, M., N.C. Wickramasinghe, J.V. Narlikar, P. Rajaratnam, and J. Perkins. 2004. Confirmation of the presence of viable but non-culturable bacteria in the stratosphere. International Journal of Astrobiology 3: 13–15.

    Article  Google Scholar 

  • Werren, J.H., L. Baldo, and M.E. Clark. 2008. Wolbachia: Master manipulators of invertebrate biology. Nature Reviews Microbiology 6(10): 741–751.

    Article  Google Scholar 

  • West, S., A. Griffin, and A. Gardner. 2007. Social semantics: Altruism, cooperation, mutualism, strong reciprocity and group selection. Journal of Evolutionary Biology 20(2): 415–432.

    Article  Google Scholar 

  • Whitman, W.B., D.C. Coleman, and W.J. Wiebe. 1998. Prokaryotes: The unseen majority. Proceedings of the National Academy of Sciences USA 95: 6578–6583.

    Article  Google Scholar 

  • Williams, G.C. 1966. Adaptation and natural selection: A critique of some current evolutionary thought. Princeton: Princeton University Press.

    Google Scholar 

  • Willner, D., M.R. Haynes, M. Furlan, N. Hanson, B. Kirby, Y.W. Lim, P.B. Rainey, R. Schmieder, M. Youle, D. Conrad, and F. Rohwer. 2011. Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology. doi:10.1165/rcmb.2011-0253OC.

  • Wilson, J. 1999. Biological individuality: The identity and persistence of living entities. Cambridge, MA: Cambridge University Press.

    Book  Google Scholar 

  • Wilson, D.S., and E. Sober. 1989. Reviving the superorganism. Journal of Theoretical Biology 136: 337–356.

    Article  Google Scholar 

  • Wilson, D.S., and E.O. Wilson. 2007. Rethinking the theoretical foundation of sociobiology. The Quarterly Review of Biology 82(4): 327–348.

    Article  Google Scholar 

  • Wu, D., S.C. Daugherty, S.E. van Aken, G.H. Pai, K.L. Watkins, H. Khouri, et al. 2006. Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. PLoS Biology 4(6): 1079–1092.

    Article  Google Scholar 

  • Zehr, J.P., J. Robidart, and C. Chris Scholin. 2011. Marine microoganisms, biogeochemical cycles, and global climate change. Microbe. http://www.microbemagazine.org/index.php/04-­2011-home/3280-marine-microorganisms-biogeochemical-cycles-and-global-climate-change. Accessed 19 Dec 2011.

Download references

Acknowledgements

MJD is supported by an Australian Postgraduate Award. PB acknowledges the support of the Australian Research Council (DP0878650) and an International Postgraduate Research Scholarship from the University of Sydney. JDB is supported by the Australian-American Fulbright Commission. MAO’s research is funded by an ARC Future Fellowship.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Maureen A. O’Malley .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Duncan, M.J., Bourrat, P., DeBerardinis, J., O’Malley, M.A. (2013). Small Things, Big Consequences: Microbiological Perspectives on Biology. In: Kampourakis, K. (eds) The Philosophy of Biology. History, Philosophy and Theory of the Life Sciences, vol 1. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-6537-5_18

Download citation

Publish with us

Policies and ethics