Abstract
It is proposed that the application of computational methods provides an attractive route towards structures, whose accuracy is well-comparable to that typical for single crystal standards. Although theoretical calculations and powder diffraction seemingly represent completely disjunctive sets, it is demonstrated that they could meet at three stages of structure analysis from powders – initial model building, structure refinement and crystal chemical analysis.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Notes
- 1.
Because it is not the role of this contribution to provide a comprehensive list of all the approaches and of the relevant computer codes, a reader is asked to visit e.g. http://www.psi-k.org/codes.shtml
References
Cramer CJ (2002) Essentials of computational chemistry. Wiley, Chichester
Szabo A, Ostlund NS (1989) Modern quantum chemistry: introduction to advanced electronic structure theory. McGraw-Hill, New York
Immirzi A (2009) Constraints and restraints in crystal structure analysis. J Appl Crystallogr 42:362–364
Afonine PV, Grosse-Kunstleve RW, Urzhumtsev A, Adams PD (2009) Automatic multiple-zone rigid-body refinement with a large convergence radius. J Appl Crystallogr 42:607–615
Dinnebier RE, Ding L, Kuangbiao M, Neumann MA, Tanpipat N, Leusen FJL, Stephens PW, Wagner M (2001) Crystal structure of a rigid ferrocene-based macrocycle from high-resolution X-ray powder diffraction. Organometallics 20:5642–5647
Neumann MA, Tedesco C, Destri S, Ferro DR, Porzio W (2002) Bridging the gap – structure determination of the red polymorph of tetrahexylsexithiophene by Monte Carlo simulated annealing, first-principles DFT calculations and Rietveld refinement. J Appl Crystallogr 35:296–303
Bhattacharya A, Kankanala K, Pal S, Mukherjee AK (2010) A nimesulide derivative with potential anti-inflammatory activity: synthesis, X-ray powder structure analysis and DFT study. J Mol Struct 975:40–46
Brodski V, Peschar R, Schenk H, Brinkmann A, Van Eck ERH, Kentgens APM, Coussens B, Braam A (2004) Structure of melaminium dihydrogenpyrophosphate and its formation from melaminium dihydrogenphosphate studied with powder diffraction data, solid-state NMR, and theoretical calculations. J Phys Chem B108:15069–15076
Das U, Chattopadhyay B, Mukherjee M, Mukherjee AK (2011) Crystal structure and electronic properties of three phenylpropionic acid derivatives: a combined X-ray powder diffraction and quantum mechanical study. Chem Phys Lett 501:351–357
Kaduk JA (2002) Terephthalate salts of dipositive cations. Acta Crystallogr B58:815–822
Kaduk JA (2002) Aromatic carboxylate salts terephthalates. Trans Am Crystallogr Assoc 37:63–84
Kaduk JA, Toft MA, Golab JT (2010) Crystal structure of antimony oxalate hydroxide, Sb(C2O4)OH. Powder Diffr 25:19–24
Whitfield PS, Le Page Y, Davidson IJ (2009) Ab initio structure determination of the low temperature phase of succinonitrile from X-ray powder diffraction data – coping with potential poor quality using DFT ab initio methods. Powder Diffr 23:292–299
Whitfield PS, Mitchell LD, Lepage Y, Margeson J, Roberts AC (2010) Crystal structure of the mineral strontiodresserite from laboratory powder diffraction data. Powder Diffr 25:322–328
Florence AJ, Bardin J, Johnston B, Shankland N, Griffin TAN, Shankland K (2009) Structure determination from powder data: Mogul and CASTEP. Z Krist Suppl 30:215–220
Jorík V, Scholtzová E, Segl’a P (2008) Combined powder diffraction and solid-state DFT study of [Cu(2,6-dimethoxynicotinate)(2)(muronicol)(2)](n) complex. Z Krist 223:524–529
Smrčok L, Jorík V, Scholtzová E, Milata V (2007) Ab initio structure determination of 5-anilinomethylene-2,2-dimethyl-1,3-dioxane-4,6-dione from laboratory powder data – a combined use of X-ray, molecular and solid-state DFT study. Acta Crystallogr B63:477–484
Smrčok L, Brunelli M, Boča M, Kucharík M (2008) Structure of K2TaF7 at 993 K: the combined use of synchrotron powder data and solid-state DFT calculations. J Appl Crystallogr 41:634–636
Smrčok L, Bitschnau B, Filinchuk Y (2008) Low temperature powder diffraction and DFT solid state computational study of hydrogen bonding in NH4VO3. Cryst Res Technol 44:978–984
Smrčok L, Kucharík M, Tovar M, Žižak I (2009) High temperature powder diffraction and solid state DFT study of beta-cryolite (Na3AlF6). Cryst Res Technol 44:834–840
Smrčok L, Černý R, Boča M, Macková I, Kubíková B (2010) K3TaF8 from laboratory X-ray powder data. Acta Crystallogr C66:I16–I18
van de Streek J, Neumann MA (2010) Validation of experimental molecular crystal structures with dispersion-corrected density functional theory of calculations. Acta Crystallogr B66:544–558
Milman V, Refson K, Clark SJ, Pickard CJ, Yates JR, Gao S-P, Hasnip PJ, Probert MIJ, Perlov A, Segall MD (2010) Electron and vibrational spectroscopies using DFT, plane waves and pseudopotentials CASTEP implementation. J Mol Struct (THEOCHEM) 954:22–35
Hafner J (2000) Atomic-scale computational materials science. Acta Mater 48:71–92
Gillan MJ (1997) The virtual matter laboratory. Contemp Phys 38:115–130
Reed AE, Curtiss LA, Weinhold F (1988) Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chem Rev 88:899–926
Weinhold F, Landis C (2005) Valency and bonding: a natural bond orbital donor-acceptor perspective. Cambridge University Press, Cambridge
Langer V, Mach P, Smrčok L, Milata V (2009) (E)-Methyl 2-[(2-flourophenyl)aminomethylene]-3-oxobutanoate: X-ray and density functional (DFT) study. Acta Crystallogr C65:o183–o185
Bent HA (1961) An appraisal of valence-bond structures and hybridization in compounds of the first-row elements. Chem Rev 61:276–311
Ahlrichs R, Eichhőfer A, Fenske D, Hampe O, Kappes MM, Nava P, Olkowska-Oetzel J (2004) Synthesis and structure of [Ag26In18S36Cl6(dppm)10(thf)4] [InCl4(thf)]2 – a combined approach of theory and experiment. Angew Chem Int Ed 43:3823–3827
Skorczyk R (1976) The calculation of crystal energies as an aid in structural chemistry 1: a semi-empirical potential field model with atomic constants as parameters. Acta Crystallogr A32:447–452
Acknowledgement
This contribution was partially supported by Slovak Grant Agency VEGA under the contract 2/0150/09. My thanks are to P. Mach for his critical reading of a draft of the text and also to R. Skorczyk, whom I have never met, but whose paper [31] has many years ago triggered my interest in the field of solid-state calculations.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer Science+Business Media Dordrecht
About this paper
Cite this paper
Smrčok, L. (2012). Powder Diffraction+Computational Methods. In: Kolb, U., Shankland, K., Meshi, L., Avilov, A., David, W. (eds) Uniting Electron Crystallography and Powder Diffraction. NATO Science for Peace and Security Series B: Physics and Biophysics. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-5580-2_15
Download citation
DOI: https://doi.org/10.1007/978-94-007-5580-2_15
Published:
Publisher Name: Springer, Dordrecht
Print ISBN: 978-94-007-5579-6
Online ISBN: 978-94-007-5580-2
eBook Packages: Physics and AstronomyPhysics and Astronomy (R0)