Skip to main content

The Distribution of the Hordoindoline Genes and Identification of Puroindoline b-2 Variant Gene Homologs in the Genus Hordeum

  • Conference paper
  • First Online:
Book cover Advance in Barley Sciences

Abstract

Barley hordoindoline genes (Hina and Hinb) are homologous to wheat puroindoline genes (Pina and Pinb). These genes are involved in grain hardness, which is an important quality characteristic for barley processing. However, the interspecific variation in the Hin genes in the genus Hordeum has not been studied in detail. We examined the variation in Hin genes and used it to infer the phylogenetic relationships between the genes found in two H. vulgare species and 10 wild relatives. Our results suggest that the Hinb gene duplicated during the early stages of speciation in Hordeum. We also identified novel variant forms of Hina and Hinb genes in the wild Hordeum species and preliminarily named them Hinc. The phylogenetic tree of Gsp-1, Hin, and Pin genes shown demonstrates that Hinc and Pinb-2v genes formed one cluster. Therefore, we considered that Hinc and Pinb-2v genes shared a common ancestral gene and were homologous to each other. We also studied the evolutional process of Gsp-1, Hin, and Pin genes. Our results suggested that Gsp-1 genes might be the most closely related to an ancestral gene on Ha locus.

*Presenting author, Yohei Terasawa

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    These lines were kindly provided by Dr. S. Taketa, Okayama University, Japan.

References

  • Blattner, F. R. (2004). Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences. Molecular Phylogenetics and Evolution, 33, 289–299.

    Article  PubMed  CAS  Google Scholar 

  • Blochet, J. E., Chevalier, C., Forest, E., Pebay, P. E., Gautier, M. F., Joudrier, J., Pézolet, M., & Marion, D. (1993). Complete amino acid sequence of puroindoline, a new basic and cystine-rich protein with a unique trytophan-rich domain, isolated from wheat endosperm by Triton X-114 phase partitioning. FEBS Letters, 329, 336–340.

    Article  PubMed  CAS  Google Scholar 

  • Caldwell, K. S., Langridge, P., & Powell, W. (2004). Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice. Plant Physiology, 136, 3177–3190.

    Article  PubMed  CAS  Google Scholar 

  • Caldwell, K. S., Russell, J., Langridge, P., & Powell, W. (2006). Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics, 172, 557–567.

    Article  PubMed  CAS  Google Scholar 

  • Chantret, N., Cenci, A., Sabot, F., Anderson, O. D., & Dubcovsky, J. (2004). Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice. Molecular Genetics and Genomics, 271, 377–386.

    Article  PubMed  CAS  Google Scholar 

  • Chantret, N., Salse, J., Sabot, F., Rahman, S., Bellec, A., Laubin, B., Dubois, I., Dossat, C., Sourdille, P., Joudrier, P., Gautier, M. F., Cattolico, L., Beckert, M., Aubourg, S., Weissenbach, J., Caboche, M., Bernard, M., Leroy, P., & Chalhoub, B. (2005). Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). The Plant Cell, 17, 1033–1045.

    Article  PubMed  CAS  Google Scholar 

  • Charles, M., Tang, H., Belcram, H., Paterson, A., & Gornicki, P. (2009). Sixty million years in evolution of soft grain trait in grasses: emergence of the softness locus in the common ancestor of Pooideae and Ehrhartoideae, after their divergence from Panicoideae. Molecular Biology and Evolution, 26, 1651–1661.

    Article  PubMed  CAS  Google Scholar 

  • Chen, F., Beecher, B., & Morris, C. F. (2010a). Physical mapping and a new variant of Puroindoline b-2 genes in wheat. Theoretical and Applied Genetics, 120, 745–751.

    Article  PubMed  Google Scholar 

  • Chen, F., Zhang, F. Y., Cheng, X. Y., Morris, C. F., Xu, H. X., Dong, Z. D., Zhan, K. H., He, Z. H., Xia, X. C., & Cui, D. Q. (2010b). Association of Puroindoline b-B2 variants with grain traits, yield components and flag leaf size in bread wheat (Triticum aestivum L.) varieties of the Yellow and Huai Valleys of China. Journal of Cereal Science, 52, 247–253.

    Article  CAS  Google Scholar 

  • Chen, F., Xu, H. X., Zhang, F. Y., Xia, X. C., He, Z. H., Wang, D. W., Dong, Z. D., Zhan, K. H., Cheng, X. Y., & Cui, D. Q. (2011). Physical mapping of puroindoline b-2 genes and molecular characterization of a novel variant in durum wheat (Triticum turgidum L.). Molecular Breeding, 28, 153–161.

    Article  Google Scholar 

  • Darlington, H. F., Rouster, J., Hoffmann, L., Halford, N. G., Shewry, P. R., & Simpson, D. J. (2001). Identification and molecular characterisations of hordoindolines from barley grain. Plant Molecular Biology, 47, 785–794.

    Article  PubMed  CAS  Google Scholar 

  • Gautier, M. F., Cosson, P., Guirao, A., Alary, R., & Joudrier, P. (2000). Puroindoline genes are highly conserved in diploid ancestor wheats and related species but absent in tetraploid Triticum species. Plant Science, 153, 81–91.

    Article  CAS  Google Scholar 

  • Giroux, M. J., & Morris, C. F. (1998). Wheat grain hardness results from highly conserved mutations in the friabilin components puroindoline a and b. Proceedings of the National Academy of Sciences of the United States of America, 95, 6262–6266.

    Article  PubMed  CAS  Google Scholar 

  • Kakeda, K., Taketa, S., & Komatsuda, T. (2009). Molecular phylogeny of the genus Hordeum using thioredoxin-like gene sequences. Breeding Science, 59, 595–601.

    Article  CAS  Google Scholar 

  • Krishnamurthy, K., & Giroux, M. (2001). Expression of wheat puroindoline genes in transgenic rice confers grain softness. Nature Biotechnology, 19, 162–166.

    Article  PubMed  CAS  Google Scholar 

  • Law, C. N., Young, C. F., Brown, J. W. S., Snape, J. W., & Worland, A. J. (1978). The study of grain protein control in wheat using whole chromosome substitution lines. In Seed protein improvement by nuclear techniques (pp. 483–502). Vienna: IAEA.

    Google Scholar 

  • Massa, A. N., Morris, C. F. (2006). Molecular evolution of puroindoline-a, puroindoline-b and grain softness protein-1 genes in the tribe triticeae. Journal of Molecular Evolution, 63, 526–536.

    Article  PubMed  CAS  Google Scholar 

  • Mattern, P. J., Morris, R., Schmidt, J. W., & Johnson, V. A. (1973). Location of genes for kernel properties in wheat variety ‘Cheyenne’ using chromosome substitution lines. In S. R. Sears & L. M. S. Sears (Eds.), Proceedings of the 4th International Wheat Genetics Symposium, Columbus, MO (pp. 703–707). Agricultural Experiment Station, College of Agriculture, University of Missouri.

    Google Scholar 

  • Morris, C. F. (2002). Puroindolines: The molecular genetic basis of wheat hardness. Plant Molecular Biology, 48, 633–647.

    Article  PubMed  CAS  Google Scholar 

  • Nagamine, T., Sekiwa, T., Yamaguchi, E., Oozeki, M., & Kato, T. (2009). Relationship between quality parameters and SKCS hardness index in malting barley. Journal of the Institute of Brewing, 109, 129–134.

    Google Scholar 

  • Phillips, R. L., Palombo, R. L., Panozzo, J. F., & Bhave, M. (2005). Puroindolines, Pin alleles, hordoindolines and grain softness proteins are sources of bactericidal and fungicidal peptides. Journal of Cereal Science, 53, 112–117.

    Article  Google Scholar 

  • Rouvés, S., Boef, C., Zwickert-Menteur, S., Gautier, M. F., JoudrierP, Bernard M., & Jestin, L. (1996). Locating supplementary RFLP markers on barley chromosome 7 and synteny with homeologous wheat group 5. Plant Breed, 115, 511–513.

    Article  Google Scholar 

  • Saitou, N., & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406–425.

    PubMed  CAS  Google Scholar 

  • Takahashi, A., Ikeda, T. M., Takayama, T., & Yanagisawa, T. (2010). A barley hordoindoline mutation resulted in an increase in grain hardness. Theoretical and Applied Genetics, 120, 519–526.

    Article  PubMed  CAS  Google Scholar 

  • Terasawa, Y., Rahman, S. M., Takata, K., & Ikeda, T. M. (2012). Distribution of Hordoindoline genes in the genus Hordeum. Theoretical and Applied Genetics, 124, 143–151.

    Article  PubMed  CAS  Google Scholar 

  • Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680.

    Article  PubMed  CAS  Google Scholar 

  • Turuspekov, Y., Beecher, B., Darlington, Y., Bowman, J., Blake, T. K., & Giroux, M. J. (2008). Hardness locus sequence variation and endosperm texture in spring barley. Crop Science, 48, 1007–1019.

    Article  CAS  Google Scholar 

  • Wilkinson, M., Wan, Y., Tosi, P., Leverington, M., Snape, J., Mitchel, R. A. C., & Shewry, P. R. (2008). Identification and genetic mapping of variant forms of puroindoline b expressed in developing wheat grain. Journal of Cereal Science, 48, 722–728.

    Article  CAS  Google Scholar 

  • Yanaka, M., Takata, K., Terasawa, Y., & Ikeda, T. M. (2011). Chromosome 5H of Hordeum species involved in reduction in grain hardness in wheat genetic background. Theoretical and Applied Genetics, 123, 1013–1018.

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the Bio-oriented Technology Research Advancement Institution. We express our sincere gratitude to Dr. Shin Taketa for providing material support.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tatsuya M. Ikeda .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Zhejiang University Press and Springer Science+Business Media Dordrecht

About this paper

Cite this paper

Terasawa, Y., Takata, K., Ikeda, T.M. (2013). The Distribution of the Hordoindoline Genes and Identification of Puroindoline b-2 Variant Gene Homologs in the Genus Hordeum . In: Zhang, G., Li, C., Liu, X. (eds) Advance in Barley Sciences. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-4682-4_7

Download citation

Publish with us

Policies and ethics