Skip to main content

Medical-GiD: From Medical Images to Simulations, 4D MRI Flow Analysis

  • Chapter
  • First Online:
Computational Vision and Medical Image Processing

Part of the book series: Computational Methods in Applied Sciences ((COMPUTMETHODS,volume 19))

Abstract

Medical imaging techniques, such as MRI and CT scanning, are valuable tools for getting a lot of information non-invasively and it is useful for reconstructing the geometry of complex objects about the patients. Medical-GiD is a medical image platform that incorporates a module to read directly the blood velocity profile from the MR scan, in particular for deformable registration of 4D MRI images, Electrocardiography (ECG)-synchronized and respiration controlled 3D magnetic resonance (MR) velocity mapping (flow-sensitive 4D MRI), 3D morphologic and three-directional blood flow data. Furthermore, Medical-GiD is focus in the medical image processing in the biomechanical research field to generating meshes from the medical images, to apply in Computational Fluid Dynamics (CFD) or structural mechanics (stress analysis). To date, these techniques have largely been applied to compute meshes for numerical simulations, but with Medical-GiD, we will have the integration between the real data and numerical simulations.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Chorin, A.J.: Numerical solution of the Navier Stokes Equations. Math. Comput. 22, 745–762 (1968)

    Article  MATH  MathSciNet  Google Scholar 

  2. COMPASS Ingeniera y Sistemas SA.Tdyn. Environment for Fluid Dynamics (Navier Stokes equations), Turbulence, Heat Transfer, Advection of Species and Free surface simulation. Theoretical background and Tdyn 3D tutorial, March 2002

    Google Scholar 

  3. Formaggia, L., Nobile, F., Quarteroni, A., Veneziani, A.: Multiscale modelling of the circulatory system: a preliminary analysis. Comput. Visual. Sci. 2, 75–83 (1999)

    Article  MATH  Google Scholar 

  4. GiD Reference Manual. The personal pre and postprocessor. Ribó, R., de Riera Pasenau, M.A., Escolano, E., Suit, J., Colls, A., May 2010, CIMNE. ( ftp://www.gidhome.com/pub/GiD_Documentation/Docs/GiD_Reference_Manual.pdf)

  5. Girault, V., Raviart, P.-A.: Finite Element Methods for Navier-Stokes Equations, p. 374 Springer, Berlin/Heidelberg/New York/Tokyo: (1986)

    Google Scholar 

  6. The ITK Software Guide Second Edition. Ibáñez, L., Schroeder, W., Ng, L., Cates, J., and the Insight Software Consortium, August 30, 2005, Kitware Inc.

    Google Scholar 

  7. Labelle, F., Shewchuk, J.R.: Isosurface Stuffing: fast tetrahedral meshes with good dihedral angles. ACM Transactions on Graphics, 26(3), Article 57, July 2007

    Google Scholar 

  8. Lohner, R., Parikh, P.: Three dimensional grid generation by the advancing-front method. Int. J. Numer. Meth. Fluid. 8, 1135–1149 (1988)

    Article  Google Scholar 

  9. Lorensen, W.E., Cline, H.E.: Marching cubes: A high resolution 3D surface construction algorithm. ACM SIGGRAPH Computer Graphic, 21(4), 163–169, July 1987

    Article  Google Scholar 

  10. Markl, M., Harloff, A., Bley, T.A., Frydrychiwicz, A., et al.: Time-resolved 3D MR velocity mapping at 3T: improved navigator-gated assessment of vascular anatomy and blood flow. J. Magn. Reson. Imag. Art: 06-0195, 25:000–000 (2007)

    Google Scholar 

  11. Markl, M., Draney, M.T., Hope, M.D., et al.: Time-resolved 3D velocity mapping in the thoracic aorta: visualization of three-directional blood flow patterns in healthy volunteers and patients. J. Comput. Assist. Tomogr. 28, 459–468 (2004)

    Article  Google Scholar 

  12. Markl, M., Chan, F.P., Alley, M.T., et al.: Time-resolved 3D phase-contrast MRI. J. Magn. Reson. Imag. 17, 499–506 (2003)

    Article  Google Scholar 

  13. Oñate, E., García, J., Idelsohn, S.R., del Pin, F.: Finite calculus formulation for finite element analysis of incompressible flows. Eulerian, ALE and Lagrangian approaches. Comput. Meth. Appl. Mech. Eng. Elsevier, Laussane (Switzerland) (2006). ISSN 0045-7825

    Google Scholar 

  14. Oñate, E., Valls, A., García, J.: FIC/FEM formulation with matrix stabilizing terms for incompressible flows at low and high Reynolds numbers. Comput. Mech. Springer, Berlin (2006). ISSN: 0178-7675 (Paper) 1432-0924 (Online)

    Google Scholar 

  15. Oñate, E., Valls, A., García, J.: Computation of turbulent flows using a Finite calculus – finite element formulation. Int. J. Numer. Meth. Fluid. Wiley, London (GB) (2007). ISSN 0271-2091

    Google Scholar 

  16. Oñate, E., Valls, A., García, J.: Modeling incompressible flow at low and high reynolds numbers via a Finite calculus–Finite element approach. J. Comput. Phys. Elsevier, New York (USA) (2007). ISSN 0021-9991

    Google Scholar 

  17. Perktold, K., et al.: Pulsatile non-Newtonian blood flow in three-dimensional carotid bifurcation models: a numerical study of flow phenomena under different bifurcation angles. J. Biomed. Eng. 13, 507–515 (1991)

    Article  Google Scholar 

  18. Perktold, K., Rappitsch, G.: Mathematical modeling of local arterial flow and vessel mechanics. In: Crolet, J., Ohayon, R. (eds.) Computational Methods for Fluid Structure Interaction, pp. 230–245. Wiley, New York (1994)

    Google Scholar 

  19. Schroeder, W., Martin, K., Lorensen, B.: Visualization toolkit. An Object-Oriented approach to 3D graphics, 4th edn. Kitware Inc. (2006)

    Google Scholar 

  20. Quartapelle, L.: Numerical solution of the incompressible Navier–Stokes equations. Birkhäuser Verlag, Basel (1993)

    MATH  Google Scholar 

  21. Taylor, C.A.: A Computation Framework for Investigating Hemodynamic Factors in Vascular Adaptation and Disease, Thesis. Stanford University, California, USA (1996)

    Google Scholar 

  22. Welch, B., Jones, K., Hobbs, J.: Practical programming in Tcl and Tk, 4th edn. Published by Prentice Hall, PTR (2003)

    Google Scholar 

  23. Schroeder, W., Martin, K., Lorensen, B.: The visualization toolkit. An Object-Oriented approach to 3D graphics, 4th edn. Kitware Inc. (2006)

    Google Scholar 

  24. van Steenhoven, A.A., van de Vossea, F.N., Rindt, C.C.M., Janssenu, J.D., Renemanb, R.S.: Experimental and numerical analysis of carotid arterv blood flow. Liepsch, D.W. (ed.) Blood Flow in Large Arteries: Applications to Atherogenesis and Clinical Medicine. Monogr Atheroscler, vol. 15, pp. 250–260. Basel, Karger (1990)

    Google Scholar 

  25. VTK User’s Guide, Install, use and extent the visualization toolkit. Version 5, Kitware Inc. March 2010

    Google Scholar 

Download references

Acknowledgements

The authors would like to acknowledge Dr. Frances Carreras (from Hospital de la Santa Creu i Sant Pau) and Michael Markl (from the Departments of Diagnostic Radiology and Medical Physics, Freiburg, Germany) for their contributions and the support give us to do this work. The medical images used during this work are from the Departments of Diagnostic Radiology, Medical Physics; Neurology and Clinical Neurophysiology; and Cardiovascular Surgery, University Hospital Freiburg, Freiburg, Germany.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Eduardo Soudah .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media B.V.

About this chapter

Cite this chapter

Soudah, E., Pennecot, J., Pérez, J.S., Bordone, M., Oñate, E. (2011). Medical-GiD: From Medical Images to Simulations, 4D MRI Flow Analysis. In: Tavares, J., Jorge, R. (eds) Computational Vision and Medical Image Processing. Computational Methods in Applied Sciences, vol 19. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-0011-6_8

Download citation

  • DOI: https://doi.org/10.1007/978-94-007-0011-6_8

  • Published:

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-007-0010-9

  • Online ISBN: 978-94-007-0011-6

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics