Abstract
The emerging roles for post-translational modifications in the regulation of cellular function have turned the spotlight on glycosylation. Given the prevalence of protein and lipid glycosylation, it has become imperative to create and utilize new tools to study these critical biopolymers. In particular, there has been an emphasis on the development of high-throughput methodologies to study the structural and functional aspects of glycan-protein interactions. The use of carbohydrate binding proteins (i.e. lectins) in a microarray format has greatly enhanced our ability to de-convolute the structural aspects of the glycome. This simple and unique technology provides a rapid method for glycomic analysis, which opens up the field of glycobiology to more systems-based approaches towards function.
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Abbreviations
- CHO:
-
Chinese hamster ovary
- DC-SIGN:
-
dendritic cell-specific intercellular adhesion molecule-3-grabbing non-integrin
- Fuc:
-
fucose
- Gal:
-
galactose
- GlcNAc:
-
N-acetylglucosamine
- HIV:
-
human immunodeficiency virus
- LacNAc:
-
N-acetyllactosamine
- NHS:
-
N-hydroxysuccinimidyl
References
Huet G, Gouyer V, Delacour D, Richet C, Zanetta JP, Delannoy P, Degand P (2003) Involvement of glycosylation in the intracellular trafficking of glycoproteins in polarized epithelial cells. Biochimie 85:323–330
Helenius A, Aebi M (2001) Intracellular functions of N-linked glycans. Science 291:2364–2369
Varki A, Cummings RD, Esko JE, Freeze HH, Stanley P, Bertozzi CR, Hart GW, Etzler ME (2008) Essentials of glycobiology. Cold Spring Harbor Laboratory Press, New York
Ohtsubo K, Marth JD (2006) Glycosylation in cellular mechanisms of health and disease. Cell 126:855–867
Haltiwanger RS, Lowe JB (2004) Role of glycosylation in development. Annu Rev Biochem 73:491–537
Sharon N (2006) Carbohydrates as future anti-adhesion drugs for infectious diseases. Biochim Biophys Acta 1760:527–537
Mahal LK (2008) Glycomics: towards bioinformatic approaches to understanding glycosylation. Anticancer Agents Med Chem 8:37–51
Cummings RD (2009) The repertoire of glycan determinants in the human glycome. Mol Biosyst 5:1087–1104
Rudiger H, Gabius HJ (2001) Plant lectins: occurrence, biochemistry, functions and applications. Glycoconj J 18:589–613
Gemeiner P, Mislovicova D, Tkac J, Svitel J, Patoprsty V, Hrabarova E, Kogan G, Kozar T (2009) Lectinomics II. A highway to biomedical/clinical diagnostics. Biotechnol Adv 27:1–15
Sharon N (2007) Lectins: carbohydrate-specific reagents and biological recognition molecules. J Biol Chem 282:2753–2764
Mislovičová D, Gemeiner P, Kozarova A, Kozar T (2009) Lectinomics I. Relevance of exogenous plant lectins in biomedical diagnostics. Biologia 64:1–19
Wu AM, Lisowska E, Duk M, Yang Z (2008) Lectins as tools in glycoconjugate research. Glycoconj J 26:899–913
Hirabayashi J (2008) Concept, strategy and realization of lectin-based glycan profiling. J Biochem 144:139–147
Geyer H, Geyer R (2006) Strategies for analysis of glycoprotein glycosylation. Biochim Biophys Acta 1764:1853–1869
Angeloni S, Ridet JL, Kusy N, Gao H, Crevoisier F, Guinchard S, Kochhar S, Sigrist H, Sprenger N (2005) Glycoprofiling with micro-arrays of glycoconjugates and lectins. Glycobiology 15:31–41
Pilobello KT, Krishnamoorthy L, Slawek D, Mahal LK (2005) Development of a lectin microarray for the rapid analysis of protein glycopatterns. Chembiochem 6:985–989
Pilobello KT, Mahal LK (2007) Lectin microarrays for glycoprotein analysis. Methods Mol Biol 385:193–203
Kuno A, Uchiyama N, Koseki-Kuno S, Ebe Y, Takashima S, Yamada M, Hirabayashi J (2005) Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling. Nat Methods 2:851–856
Uchiyama N, Kuno A, Tateno H, Kubo Y, Mizuno M, Noguchi M, Hirabayashi J (2008) Optimization of evanescent-field fluorescence-assisted lectin microarray for high-sensitivity detection of monovalent oligosaccharides and glycoproteins. Proteomics 8:3042–3050
Nagaraj VJ, Eaton S, Thirstrup D, Wiktor P (2008) Piezoelectric printing and probing of Lectin NanoProbeArrays for glycosylation analysis. Biochem Biophys Res Commun 375:526–530
Rosenfeld R, Bangio H, Gerwig GJ, Rosenberg R, Aloni R, Cohen Y, Amor Y, Plaschkes I, Kamerling JP, Maya RB (2007) A lectin array-based methodology for the analysis of protein glycosylation. J Biochem Biophys Methods 70:415–426
Zheng T, Peelen D, Smith LM (2005) Lectin arrays for profiling cell surface carbohydrate expression. J Am Chem Soc 127:9982–9983
Tateno H, Uchiyama N, Kuno A, Togayachi A, Sato T, Narimatsu H, Hirabayashi J (2007) A novel strategy for mammalian cell surface glycome profiling using lectin microarray. Glycobiology 17:1138–1146
Tao SC, Li Y, Zhou J, Qian J, Schnaar RL, Zhang Y, Goldstein IJ, Zhu H, Schneck JP (2008) Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers. Glycobiology 18:761–769
Hsu KL, Pilobello KT, Mahal LK (2006) Analyzing the dynamic bacterial glycome with a lectin microarray approach. Nat Chem Biol 2:153–157
Hsu KL, Mahal LK (2006) A lectin microarray approach for the rapid analysis of bacterial glycans. Nat Protoc 1:543–549
Takekawa H, Ina C, Sato R, Toma K, Ogawa H (2006) Novel carbohydrate-binding activity of pancreatic trypsins to N-linked glycans of glycoproteins. J Biol Chem 281:8528–8538
Nimrichter L, Gargir A, Gortler M, Altstock RT, Shtevi A, Weisshaus O, Fire E, Dotan N, Schnaar RL (2004) Intact cell adhesion to glycan microarrays. Glycobiology 14:197–203
Adams RB, Voelker WH, Gregg EC (1967) Electrical counting and sizing of mammalian cells in suspension: an experimental evaluation. Phys Med Biol 12:79–92
Pilobello KT, Slawek DE, Mahal LK (2007) A ratiometric lectin microarray approach to analysis of the dynamic mammalian glycome. Proc Natl Acad Sci U S A 104:11534–11539
Ebe Y, Kuno A, Uchiyama N, Koseki-Kuno S, Yamada M, Sato T, Narimatsu H, Hirabayashi J (2006) Application of lectin microarray to crude samples: differential glycan profiling of lec mutants. J Biochem 139:323–327
Matsuda A, Kuno A, Ishida H, Kawamoto T, Shoda J and Hirabayashi J (2008) Development of an all-in-one technology for glycan profiling targeting formalin-embedded tissue sections. Biochem Biophys Res Commun 370:259–263
Hamelinck D, Zhou H, Li L, Verweij C, Dillon D, Feng Z, Costa J, Haab BB (2005) Optimized normalization for antibody microarrays and application to serum-protein profiling. Mol Cell Proteomics 4:773–784
Chen S, LaRoche T, Hamelinck D, Bergsma D, Brenner D, Simeone D, Brand RE, Haab BB (2007) Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays. Nat Methods 4:437–444
Kuno A, Kato Y, Matsuda A, Kaneko MK, Ito H, Amano K, Chiba Y, Narimatsu H, Hirabayashi J (2009) Focused differential glycan analysis with the platform antibody-assisted lectin profiling for glycan-related biomarker verification. Mol Cell Proteomics 8:99–108
Wu L, KewalRamani VN (2006) Dendritic-cell interactions with HIV: infection and viral dissemination. Nat Rev Immunol 6:859–868
Krishnamoorthy L, Bess JW, Jr., Preston AB, Nagashima K, Mahal LK (2009) HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin. Nat Chem Biol
Booth AM, Fang Y, Fallon JK, Yang JM, Hildreth JE, Gould SJ (2006) Exosomes and HIV Gag bud from endosome-like domains of the T cell plasma membrane. J Cell Biol 172:923–935
Chan R, Uchil PD, Jin J, Shui G, Ott DE, Mothes W, Wenk MR (2008) Retroviruses human immunodeficiency virus and murine leukemia virus are enriched in phosphoinositides. J Virol 82:11228–11238
Scanlan CN, Offer J, Zitzmann N, Dwek RA (2007) Exploiting the defensive sugars of HIV-1 for drug and vaccine design. Nature 446:1038–1045
Raman R, Venkataraman M, Ramakrishnan S, Lang W, Raguram S, Sasisekharan R (2006) Advancing glycomics: implementation strategies at the consortium for functional glycomics. Glycobiology 16:82R–90R
Yabe R, Suzuki R, Kuno A, Fujimoto Z, Jigami Y, Hirabayashi J (2007) Tailoring a novel sialic acid-binding lectin from a ricin-B chain-like galactose-binding protein by natural evolution-mimicry. J Biochem 141:389–399
Hsu KL, Gildersleeve JC, Mahal LK (2008) A simple strategy for the creation of a recombinant lectin microarray. Mol Biosyst 4:654–662
Jeong S, Eom T, Kim S, Lee S, Yu J (2001) In vitro selection of the RNA aptamer against the Sialyl Lewis X and its inhibition of the cell adhesion. Biochem Biophys Res Commun 281:237–243
Li M, Lin N, Huang Z, Du L, Altier C, Fang H, Wang B (2008) Selecting aptamers for a glycoprotein through the incorporation of the boronic acid moiety. J Am Chem Soc 130:12636–12638
Zou Y, Broughton DL, Bicker KL, Thompson PR, Lavigne JJ (2007) Peptide borono lectins (PBLs): a new tool for glycomics and cancer diagnostics. Chembiochem 8:2048–2051
Acknowledgements
L.K.M would like to acknowledge the Alfred P. Sloan foundation for funding.
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Krishnamoorthy, L., Mahal, L.K. (2010). Lectin Microarrays: Simple Tools for the Analysis of Complex Glycans. In: Owens, R., Nettleship, J. (eds) Functional and Structural Proteomics of Glycoproteins. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-9355-4_4
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DOI: https://doi.org/10.1007/978-90-481-9355-4_4
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