Abstract
When performing genome wide transcriptomic s analysis life scientists quite often face problems with interpretation of huge amounts of data obtained. MapMan is a tool developed to help plant scientists in this aspect. Microarray data (or other omics data) are plotted onto diagrams representing metabolic and signaling pathways or alternatively large protein families. Application is flexible thus specificities of grapevine metabolism could have been implemented when adopting the system for this species. Overview of different analytical approaches using MapMan and few examples of analytical results are presented within this chapter.
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Abbreviations
- ATP:
-
Adenosine-5'-triphosphate
- CDD:
-
Conserved Domain Database
- CHO:
-
Carbohydrate
- DNA:
-
Deoxyribonucleic acid
- GO:
-
Gene Ontology
- PPAP:
-
Plant Proteome Annotation Program
- RNA:
-
Ribonucleic acid
- TC:
-
Tentative contig
- TCA:
-
Tricarboxylic acid
- TIGR:
-
The Institute for Genomic Research
- VvGI:
-
Vitis vinifera Gene Index
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Rotter, A., Hren, M., Usadel, B., Gruden, K. (2010). Visualisation of Transcriptomic s Data in Metabolic Pathways. In: Delrot, S., Medrano, H., Or, E., Bavaresco, L., Grando, S. (eds) Methodologies and Results in Grapevine Research. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-9283-0_23
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DOI: https://doi.org/10.1007/978-90-481-9283-0_23
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