Skip to main content

Physical and Comparative Gene Maps in Marsupials

  • Chapter
  • First Online:
Marsupial Genetics and Genomics

Abstract

Comparative gene mapping in marsupials is responsible for many advances in our understanding of the events occurring during mammalian genome evolution. Over the past few years, the ease and speed at which genes can be physically mapped in marsupials has resulted in moderately dense physical maps for the South American opossum and the tammar wallaby. These maps have enabled genome sequence assemblies to be anchored to chromosomes and facilitated detailed comparative studies into genome evolution. The physical assignment of genes to marsupial chromosomes has resulted in many interesting and unexpected findings, including the discovery of novel genes and the absence of others, as well as providing insight into the evolution of epigenetic phenomena of genomic imprinting and X chromosome inactivation. Expanding comparative maps to include other distantly related marsupials is now possible and will be important for an accurate reconstruction of the ancestral marsupial karyotype.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Baker ML, Indiviglio S, Nyberg AM, et al. (2007) Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum. BMC Genomics 8:50.

    Article  PubMed  Google Scholar 

  • Baker ML, Osterman AK, Brumburgh S (2005) Divergent T-cell receptor delta chains from marsupials. Immunogenetics 57:665–673.

    Article  PubMed  Google Scholar 

  • Belov K, Deakin JE, Papenfuss AT, et al. (2006) Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. PLoS Biol 4:e46.

    Article  PubMed  Google Scholar 

  • Bennett JH, Breed WG, Hayman DL, Hope RM (1989) Reproductive and genetic-studies with a laboratory colony of the dasyurid marsupial Sminthopsis crassicaudata. Aust J Zool 37:207–222.

    Article  Google Scholar 

  • Davidow LS, Breen M, Duke SE, et al. (2007) The search for a marsupial XIC reveals a break with vertebrate synteny. Chromosome Res 15:137–146.

    Article  PubMed  CAS  Google Scholar 

  • Dawson GW, Graves JAM (1984) Gene mapping in marsupials and monotremes. I. The chromosomes of rodent-marsupial (Macropus) cell hybrids, and gene assignments to the X chromosome of the grey kangaroo. Chromosoma 91:20–27.

    Article  PubMed  CAS  Google Scholar 

  • Deakin JE, Koina E, Waters PD, et al. (2008) Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals. Chromosome Res 16:1159–1175.

    Article  PubMed  CAS  Google Scholar 

  • Deakin JE, Parra ZE, Graves JAM, Miller RD (2006) Physical mapping of T cell receptor loci (TRA@, TRB@, TRD@ and TRG@) in the opossum (Monodelphis domestica). Cytogenet Genome Res 112:342 K.

    Article  Google Scholar 

  • Deakin JE, Siddle HV, Belov K, Graves JAM (2007) Class I genes have split from the MHC in the tammar wallaby. Cytogenet Genome Res 116:205–211.

    Article  PubMed  CAS  Google Scholar 

  • Delbridge ML, Graves JAM (2004) Assignment of the eukaryotic translation initiation factor (EIF2S3) to tammar wallaby chromosome 5p by in situ hybridization. Cytogenet Genome Res 107:139.

    Article  PubMed  CAS  Google Scholar 

  • Donald JA, Hope RM (1981) Mapping a marsupial X chromosome using kangaroo-mouse somatic cell hybrids. Cytogenet Cell Genet 29:127–137.

    Article  PubMed  CAS  Google Scholar 

  • Duke SE, Samollow PB, Mauceli E, Lindblad-Toh K, Breen M (2007) Integrated cytogenetic BAC map of the genome of the gray, short-tailed opossum, Monodelphis domestica. Chromosome Res 15:361–370.

    PubMed  CAS  Google Scholar 

  • Edwards CA, Rens W, Clarke O, et al. (2007) The evolution of imprinting: chromosomal mapping of orthologues of mammalian imprinted domains in monotreme and marsupial mammals. BMC Evol Biol 7:157.

    Article  PubMed  Google Scholar 

  • Fitzgerald J, Wilcox SA, Graves JA, Dahl HH (1993) A eutherian X-linked gene, PDHA1, is autosomal in marsupials: a model for the evolution of a second, testis-specific variant in eutherian mammals. Genomics 18:636–642.

    Article  PubMed  CAS  Google Scholar 

  • Foster JW, Brennan FE, Hampikian GK, et al. (1992) Evolution of sex determination and the Y chromosome: SRY-related sequences in marsupials. Nature 359:531–533.

    Article  PubMed  CAS  Google Scholar 

  • Foster JW, Graves JAM (1994) An SRY-related sequence on the marsupial X chromosome: implications for the evolution of the mammalian testis-determining gene. Proc Natl Acad Sci USA 91:1927–1931.

    Article  PubMed  CAS  Google Scholar 

  • Glas R, Marshall Graves JAM, Toder R, Ferguson-Smith M, O’Brien PC (1999) Cross-species chromosome painting between human and marsupial directly demonstrates the ancient region of the mammalian X. Mamm Genome 10:1115–1116.

    Article  PubMed  CAS  Google Scholar 

  • Graves JAM (1995) The evolution of mammalian sex chromosomes and the origin of sex determining genes. Philos Trans R Soc Lond B Biol Sci 350:305–311.

    Article  PubMed  CAS  Google Scholar 

  • Graves JA, Chew GK, Cooper DW, Johnston PG (1979) Marsupial – mouse cell hybrids containing fragments of the marsupial X chromosome. Somatic Cell Genet 5:481–489.

    Article  PubMed  CAS  Google Scholar 

  • Graves JAM, Sinclair AH, Spencer JA (1989) Marsupial gene mapping and the evolution of mammalian sex chromosome form and function. Aust J Zool 37:365–383.

    Article  Google Scholar 

  • Green P (2007) 2x genomes – does depth matter? Genome Res 17:1547–1549.

    Article  PubMed  CAS  Google Scholar 

  • Hayman DL (1990) Marsupial cytogenetics. Aust J Zool 37:331–349.

    Google Scholar 

  • Hinds LA, Poole WE, Tyndale-Biscoe CH, van Oorschot RAH, Cooper DW (1989) Reproductive biology and the potential for genetic studies in the tammar wallaby, Macropus eugenii. Aust J Zool 37:223–234.

    Article  Google Scholar 

  • Hope RM, Cooper DW (1989) Marsupial and monotreme breeding in wild and captive populations: towards a laboratory marsupial. Aust J Zool 37:157–160.

    Article  Google Scholar 

  • Hore TA, Koina E, Wakefield MJ, Graves JAM (2007) The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals. Chromosome Res 15:147–161.

    Article  PubMed  CAS  Google Scholar 

  • Kemkemer C, Kohn M, Cooper DN, et al. (2009) Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution. BMC Evol Biol 9:84.

    Article  PubMed  Google Scholar 

  • Koopman P, Gubbay J, Vivian N, Goodfellow P, Lovell-Badge R (1991) Male development of chromosomally female mice transgenic for Sry. Nature 351:117–121.

    Article  PubMed  CAS  Google Scholar 

  • Lawton BR, Obergfell C, O’Neill RJ, O’Neill MJ (2007) Physical mapping of the IGF2 locus in the South American opossum Monodelphis domestica. Cytogenet Genome Res 116:130–131.

    Article  PubMed  CAS  Google Scholar 

  • Lewin HA, Larkin DM, Pontius J, O’Brien SJ (2009) Every genome sequence needs a good map. Genome Res 10.1101/gr.094557.109

    Google Scholar 

  • Mikkelsen TS, Wakefield MJ, Aken B, et al. (2007) Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447:167–177.

    Article  PubMed  CAS  Google Scholar 

  • Mohammadi A, Delbridge ML, Waters PD, Graves JAM (2009) Conservation of a chromosome arm in two distantly related marsupial species. Cytogenet Genome Res 124:147–150.

    Article  PubMed  CAS  Google Scholar 

  • O’Neill MJ, Ingram RS, Vrana PB, Tilghman SM (2000) Allelic expression of IGF2 in marsupials and birds. Dev Genes Evol 210:18–20.

    Article  PubMed  Google Scholar 

  • Parra ZE, Baker ML, Schwarz RS, et al. (2007) A unique T cell receptor discovered in marsupials. Proc Natl Acad Sci USA 104:9776–9781.

    Article  PubMed  CAS  Google Scholar 

  • Pask A, Toder R, Wilcox SA, Camerino G, Graves JAM (1997) The candidate sex-reversing DAX1 gene is autosomal in marsupials: implications for the evolution of sex determination in mammals. Genomics 41:422–426.

    Article  PubMed  CAS  Google Scholar 

  • Rapkins RW, Hore T, Smithwick M, et al. (2006) Recent assembly of an imprinted domain from non-imprinted components. PLoS Genet 2:e182.

    Article  PubMed  Google Scholar 

  • Rens W, O’Brien PC, Fairclough H, et al. (2003) Reversal and convergence in marsupial chromosome evolution. Cytogenet Genome Res 102:282–290.

    Article  PubMed  CAS  Google Scholar 

  • Samollow PB, Gouin N, Miethke P, et al. (2007) A microsatellite-based, physically anchored linkage map for the gray, short-tailed opossum (Monodelphis domestica). Chromosome Res 15:269–281.

    PubMed  CAS  Google Scholar 

  • Samollow PB, Graves JAM (1998) Gene Maps of Marsupials. ILAR J 39:203–224.

    PubMed  Google Scholar 

  • Sankovic N, Bawden W, Martyn J, Graves JAM, Zuelke K (2005) Construction of a marsupial bacterial artificial chromosome library from the model Australian marsupial, the tammar wallaby (Macropus eugenii). Aust J Zool 53:389–393.

    Article  CAS  Google Scholar 

  • Shevchenko AI, Zakharova IS, Elisaphenko EA, et al. (2007) Genes flanking Xist in mouse and human are separated on the X chromosome in American marsupials. Chromosome Res 15: 127–136.

    Article  PubMed  CAS  Google Scholar 

  • Siddle HV, Deakin JE, Coggill P, et al. (2009) Genomic structure and function of MHC-linked and un-linked Class I genes in the wallaby. BMC Genomics 10:310.

    Article  PubMed  Google Scholar 

  • Sinclair AH, Berta P, Palmer MS, et al. (1990) A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif. Nature 346:240–244.

    Article  PubMed  CAS  Google Scholar 

  • Sinclair AH, Foster JW, Spencer JA, et al. (1988) Sequences homologous to ZFY, a candidate human sex-determining gene, are autosomal in marsupials. Nature 336:780–783.

    Article  PubMed  CAS  Google Scholar 

  • Springer MS, Westerman M, Kavanagh JR (1998) The origin of the Australasian marsupial fauna and the phylogenetic affinities of the enigmatic monito del monte and marsupial mole. P Roy Soc Lond B Bio 265:2381–2386.

    Article  CAS  Google Scholar 

  • Sullivan RT, Morehouse CB, Comparative Sequencing NISC, Program TJW (2008) Uprobe 2008: an online resource for universal overgo hybridisation-based probe retrieval and design. Nucleic Acids Res 36:W149–W153.

    Article  PubMed  CAS  Google Scholar 

  • Toder R, Graves JAM (1998) CSF2RA, ANT3, and STS are autosomal in marsupials: implications for the origin of the pseudoautosomal region of mammalian sex chromosomes. Mamm Genome 9:373–376.

    Article  PubMed  CAS  Google Scholar 

  • VandeBerg JL (1989) The gray short-tailed opossum (Monodelphis domestica) as a model didelphid species for genetic research. Aust J Zool 37:235–247.

    Article  Google Scholar 

  • Vergnaud G, Page DC, Simmler MC, et al. (1986) A deletion map of the human Y chromosome based on DNA hybridization. Am J Hum Genet 38:109–124.

    PubMed  CAS  Google Scholar 

  • Wainwright B, Hope R (1985) Cloning and chromosomal location of the alpha- and beta-globin genes from a marsupial. Proc Natl Acad Sci USA 82:8105–8108.

    Article  PubMed  CAS  Google Scholar 

  • Waters PD, Sankovic N, Kirby PJ, Delbridge ML, Graves JAM (2003) Assignment of the thymosin beta 4 X/Y chromosome (TMSB4X/Y) gene to tammar wallaby chromosome 5p by fluorescence in situ hybridisation. Cytogenet Genome Res 103:203F.

    Article  PubMed  CAS  Google Scholar 

  • Watson JM, Spencer JA, Graves JAM, Snead ML, Lau EC (1992) Autosomal localization of the amelogenin gene in monotremes and marsupials: implications for mammalian sex chromosome evolution. Genomics 14:785–789.

    Article  PubMed  CAS  Google Scholar 

  • Wilcox SA, Watson JM, Spencer JA, Graves JAM (1996) Comparative mapping identifies the fusion point of an ancient mammalian X-autosomal rearrangement. Genomics 35:66–70.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Janine E. Deakin .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer Science+Business Media B.V.

About this chapter

Cite this chapter

Deakin, J.E. (2010). Physical and Comparative Gene Maps in Marsupials. In: Deakin, J., Waters, P., Marshall Graves, J. (eds) Marsupial Genetics and Genomics. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-9023-2_5

Download citation

Publish with us

Policies and ethics