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PCR Laboratory Set-up

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Abstract

As discussed in previous chapters, PCR is a powerful technique for amplifying very small amounts of nucleic acid templates, and also it is known for being a very sensitive technique. Thus, even a few molecules of template DNA can be amplified to billions of copies in a single reaction. Therefore, it is important that only the template we wish to amplify enters in the reaction. Unfortunately, the PCR chemistry has one drawback that is the susceptibility to contamination from its own product and also from external sources. That is why it is important to keep in mind a good laboratory scenario in which the necessary precautions and equipments are set and placed on the right position to avoid unnecessary delays in experiments, and undesirable or false results. This chapter will be dedicated to draw a picture on how a typical PCR laboratory should be handled and set up to obtain reliable and contamination-free results. Also, general guidelines for the establishment and the maintenance of a clean environment will be addressed. Courtesy is given to Viljoen et al, 2005, Molecular Diagnostics PCR Handbook., Springer, 2005

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Bibliography

  1. Cone, WR, Fairfax, MR. 1993. Protocol for ultraviolet irradiation of surfaces to reduce PCR contamination. PCR Methods Appl., 3, Supplement, S15–17.

    Google Scholar 

  2. Dieffenbach, CW, Dveksler, GS. 1993. Setting up a PCR laboratory. PCR Methods Appl., 3, Supplement, S2–7.

    PubMed  Google Scholar 

  3. Dieffenbach, CW, Dragon, EA, Dveksler, GS. 1995. Setting up a PCR laboratory. In PCR Primer. A Laboratory Manual. pp. 7–16. (Eds. Dieffenbach, CW, Dveksler, GS). Cold Spring Harbor Laboratory Press, New York.

    Google Scholar 

  4. Dragon, EA. 1993. Handling reagents in the PCR Laboratory. PCR Methods Appl., 3, Supplement: S8–9.

    Google Scholar 

  5. Dragon, EA, Spadoro, JP, Madej, R. 1993. Quality control of polymerase chain reaction. In Diagnostic Molecular Microbiology: Principles and Applications. pp. 160–8. (Eds. Persing, DH, Smith, TF, Tenover, FC, White, TJ). American Society for Microbiology, Washington D.C.

    Google Scholar 

  6. Hartley, JL, Rashtchian, A. 1993. Dealing with contamination: enzymatic control of carryover contamination in PCR. PCR Methods Appl., 3, Supplement, S10–14.

    Google Scholar 

  7. Lee, KW, Liu, BHY. 1982. Experimental study of aerosol filtration by fibrous filters. Aerosol Sci. Technol., 1, 35–46.

    CAS  Google Scholar 

  8. Lee, KW, Liu, BHY. 1982. Theoretical study of aerosol filtration by fibrous filters. Aerosol Sci. Technol., 1, 147–62.

    Article  Google Scholar 

  9. Madej, R, Scharf, S. 1990. Basic equipment and supplies. In PCR Protocols: A Guide to Methods and Applications. pp. 455–59. (Eds. Innis, MA, Gelfand, DH, Sninsky, JJ, White, TJ). Academic Press, London.

    Google Scholar 

  10. McCreedy, BJ, Callaway, TH. 1993. Laboratory design and work flow. In Diagnostic Molecular Microbiology: Principles and Applications. pp. 149–59. (Eds. Persing, DH, Smith, TF, Tenover, FC, White, TJ). American Society for Microbiology, Washington D.C.

    Google Scholar 

  11. Mifflin, TE. 2007. Setting up a PCR Laboratory. Cold Spring Harbour Protocol., 1, 5–14.

    Google Scholar 

  12. Orrego, C. 1990. Organizing a laboratory for PCR work. In PCR Protocols: A Guide to Methods and Applications. pp. 447–54. (Eds. Innis, MA, Gelfand, DH, Sninsky, JJ, White, TJ). Academic Press, London.

    Google Scholar 

  13. Renoux, A, Boulaud, D. The aerosols: physics and metrology (Lavoisier Technique et Documentation, Paris, 1998).

    Google Scholar 

  14. Tetzner, R, Dietrich, D, Distler, J. 2007. Control of carry-over contamination for PCR-based DNA methylation quantification using bisulfite treated DNA. Nucleic Acids Res., 35(1), 4.

    Article  Google Scholar 

  15. Viljoen, GJ, Nel, LH, Crowther, J. 2005. Molecular Diagnostics PCR Handbook., Springer.

    Google Scholar 

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Correspondence to Ericka A. Pestana .

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Pestana, E.A., Belak, S., Diallo, A., Crowther, J.R., Viljoen, G.J. (2009). PCR Laboratory Set-up. In: Early, rapid and sensitive veterinary molecular diagnostics - real time PCR applications. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-3132-7_6

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