Abstract
We review the role of dynamics in enzyme catalysed H-tunnelling reactions with particular focus on the integration of computational methods with experimental and numerical modelling studies. We show that H-tunnelling requires compressive motion along the H-transfer coordinate and these reactions can be modelled successfully using vibrationally-coupled H-tunnelling models in which barrier compression is driven by fast motions within the enzyme–substrate complex.
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References
Lad C, Williams NH, Wolfenden R (2003) Proc Natl Acad Sci USA 100:5607
Wolfenden R, Snider MJ (2001) Acc Chem Res 34:938
Nagel ZD, Klinman JP (2006) Chem Rev 106:3095
Schwartz SD, Schramm VL (2009) Nat Chem Biol 5:551
Sutcliffe MJ, Scrutton NS (2006) Phys Chem Chem Phys 8:4510
Careri G (1974) In: Mintz S, Widmayer SM (eds) Quantum Statistical Mechanics in the Natural Sciences. New York, Plenum
Karplus M, McCammon JA (1983) Annu Rev Biochem 52:263
Cha Y, Murray CJ, Klinman JP (1989) Science 243:1325
Bruno WJ, Bialek W (1992) Biophys J 63:689
Antoniou D, Schwartz SD (1997) Proc Natl Acad Sci USA 94:12360
Kohen A, Klinman JP (1999) Chem Biol 6:R191
Sutcliffe MJ, Scrutton NS (2000) Phil Trans R Soc Ser A 358:367
Sutcliffe MJ, Scrutton NS (2000) Trends Biochem Sci 25:405
Ball P (2004) Nature 431:396
Pu J, Gao J, Truhlar DG (2006) Chem Rev 106:3140
Bell RP (1980) The tunnel effect in chemistry. Chapman & Hall, London
Grant KL, Klinman JP (1989) Biochemistry 28:6597
Soudackov AV, Hatcher ER, Hammes-Schiffer S (2004) Effects of proton donor-acceptor vibrational motion on proton-coupled electron transfer in solution and proteins. Abstracts of Papers of the American Chemical Society 228, U254
Soudackov AV, Hammes-Schiffer S (2005) Dynamical effects of proton donor-acceptor mode and solvent in nonadiabatic proton-coupled electron transfer. Abstracts of Papers of the American Chemical Society 229, U767
Antoniou D, Schwartz SD (2001) J Phys Chem B 105:5553
Kuznetsov AM, Ulstrup J (1999) Can J Chem 77:1085
Marcus RA, Sutin N (1985) Biochim Biophys Acta 811:265
Knapp MJ, Rickert K, Klinman JP (2002) J Am Chem Soc 124:3865
Knapp MJ, Klinman JP (2002) Eur J Biochem 269:3113
Meyer MP, Klinman JP (2005) Chem Phys 319:283
Johannissen LO, Hay S, Scrutton NS et al (2007) J Phys Chem B 111:2631
Hay S, Sutcliffe MJ, Scrutton NS (2007) Proc Natl Acad Sci USA 104:507
Hatcher E, Soudackov AV, Hammes-Schiffer S (2004) J Am Chem Soc 126:5763
Hatcher E, Soudackov AV, Hammes-Schiffer S (2007) J Am Chem Soc 129:187
Meyer MP, Tomchick DR, Klinman JP (2008) Proc Natl Acad Sci USA 105:1146
Basran J, Harris RJ, Sutcliffe MJ et al (2003) J Biol Chem 278:43973
Northrop DB (2002) Biochim Biophys Acta 1595:71
Isaacs NS (1984) In: Buncel E, Lee CC (eds) Isotope effects in organic chemistry. Elsevier, London
Hay S, Pudney CR, McGrory TA et al (2009) Angew Chem Int Ed Engl 48:1452
Pang J, Hay S, Scrutton NS et al (2008) J Am Chem Soc 130:7092
Alhambra C, Corchado J, Snchez ML et al (2001) J Phys Chem B 105:11326
Truhlar DG, Isaacson AD, Garret BC (1985) In: Baer M (ed) Theory of Chemical Reaction Dynamics. CRC Press, Boca Raton, FL
Gao J, Truhlar DG (2002) Annu Rev Phys Chem 53:467
Truhlar DG, Gao JL, Garcia-Viloca M et al (2004) Int J Quant Chem 100:1136
Fernandez-Ramos A, Ellingson BA, Garrett BC, Truhlar DG (2007) Rev Comput Chem 23:125
Caratzoulas S, Schwartz SD (2001) J Chem Phys 114:2910
Caratzoulas S, Mincer JS, Schwartz SD (2002) J Am Chem Soc 124:3270
Bahnson BJ, Colby TD, Chin JK et al (1997) Proc Natl Acad Sci USA 94:12797
Masgrau L, Roujeinikova A, Johannissen LO et al (2006) Science 312:237
Johannissen LO, Hay S, Scrutton NS et al (2007) J Phys Chem B 111:2631
Sessions RB, Dauber-Osguthorpe P, Osguthorpe DJ (1989) J Mol Biol 210:617
Johannissen LO, Scrutton NS, Sutcliffe MJ (2008) J R Soc Interface 5(Suppl 3):S225
Hothi P, Lee M, Cullis PM et al (2008) Biochemistry 47:183
Farnum MF, Magde D, Howell EE et al (1991) Biochemistry 30:11567
Radkiewicz JL, Brooks CL (2000) J Am Chem Soc 122:225
Agarwal PK, Billeter SR, Rajagopalan PT et al (2002) Proc Natl Acad Sci USA 99:2794
Agrawal PK, Billeter SR, Hammes-Schiffer S (2002) J Phys Chem B 106:3283
Mincer JS, Schwartz SD (2003) J Phys Chem B 107:366
Mincer JS, Schwartz SD (2003) J Prot Res 2:437
Olsson MH, Parson WW, Warshel A (2006) Chem Rev 106:1737
Olsson MH, Mavri J, Warshel A (2006) Philos Trans R Soc Lond B Biol Sci 361:1417
Acknowledgements
Work in the authors’ laboratories is funded by the UK Biotechnology and Biological Sciences Research Council. NSS is a BBSRC Professorial Research Fellow.
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Johannissen, L.O., Hay, S., Pang, J., Sutcliffe, M.J., Scrutton, N.S. (2010). Integrating Computational Methods with Experiment Uncovers the Role of Dynamics in Enzyme-Catalysed H-Tunnelling Reactions. In: Paneth, P., Dybala-Defratyka, A. (eds) Kinetics and Dynamics. Challenges and Advances in Computational Chemistry and Physics, vol 12. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-3034-4_19
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