Abstract
India is rich in biodiversity. One-third of fungal diversity of the globe exists in India. The early fossil record of the fungi is poor, as unlike other organisms, fungal structures do not fossilize well. Thus, theories on phylogeny of fungi are based on the morphological features of the extant fungi. From the beginning of the 20th century fungi were proposed to be monophyletic, assuming that all the fungi were derived from an algal ancestor that lost its ability to photosynthesize. This gave rise to the flagellate fungi, from which rest of the fungi evolved. The loss of flagella and the evolution of zygospore gave rise to the Zygomycotina. The uninucleate zygospores of the Edogonales gave rise to the Ascomycota. The link between them being a fungus resembling Dipodascopsis (Ascomycota). The unicellular yeasts and complex filamentous Ascomycota members having extended dikaryotic stage evolved from it, believed to be similar to modern day Taphrina. This Taphrina-like ancestor was believed to have given rise to the ancestral Basidiomycota.
Monophyletic origin of fungi was followed by most of the mycologists till 1960s. But, some mycologists proposed polyphyletic origin, with red algae as origin of Ascomycota. In late 1960s Oomycota was separated from the fungi. Slime molds were also separated into a different kingdom as well. Fungi were separated into two kingdoms: All the flagellate fungi were placed in kingdom Protista (including Chytridiomycota and slime molds) and the remainder in kingdom Myceteae.
Hypothesis of phylogeny of fungi has changed radically with the advent of molecular techniques, ultrastructural and biochemical studies. On the basis of these studies in the late 1980s chytridiomycetes, zygomycetes, ascomycetes and basidiomycetes were included in kingdom Fungi. Oomycota, hyphochytrids, labyrinthulids, thraustochytrids and slime molds were accommodated in pseudo fungi. In 2007 a new classification of kingdom fungi-based on recent molecular phylogenetic analysis and morphotaxonomy was proposed, having one subkingdom — Dikarya and seven phyla. Recently in the 10th edition of Dictionary of the Fungi (2008) three kingdoms are accepted viz. Chromista, Fungi and Protozoa. True fungi belong to kingdom fungi having six phyla —Ascomycota, Basidiomycota, Chytridiomycota, Glomeromycota, Microsporidia and Zygomycota. The review contributes to the understanding of phylogenetic hypotheses, evolutionary relationships and circumscription of the fungi.
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References
Manoharachary C, Sridhar K, Singh R, Adholeya A, Suryanarayana, TS, Rawat S, Johri BN (2005) Fungal biodiversity: Distribution, conservation and prospecting of fungi from India. Curr Sci 89(1):58–71
Hawksworth DL (1991) The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycol Res 95:641–655
Domoto A, Iwatsuki K (1997) Threats of global warming to biological diversity. Tshukiji Shokan, Tokyo (In Japanese)
Hawksworth DL (1994) Fungal diversity and its implications for genetic resource collections. Stud Mycol 50:9–18
Kirk PM, Cannon PF, Minter DW, Stalpers JA (Eds.) (2008) In: Dictionary of the Fungi. 10th edition, CABI
Bilgrami KS, Jamaluddin S, Rizwi MA (1991) Fungi of India — List and References. Today and Tomorrow’s Print and Publ., New Delhi
Sarbhoy AK, Varshney JL, Agarwal DK(1996) Fungi of India (1982–92). CBS Publ and Distributors, New Delhi
Jamaluddin, Goswami MG, Ojha BM (2004) Fungi of India — 1989–2001. Scientific Publ., Jodhpur, India
Darwin CR (1859) On the origin of species by means of natural selection. John Murray Albemarle Street, London
Darwin CR (1871) The descent of man and selection in relation to sex. Vol. I, II. John Murray Albemarle Street, London
Bruns TD, White TJ, Taylor JW (1991) Fungal molecular systematics. Ann Rev Ecol Syst 22:525–564
Bartnicki-Garcia S (1987) The cell wall: a crucial structure in fungal evolution. In: Evolutionary biology of the fungi. Rayner ADM, Brasier CM, Moore D (Eds.), Cambridge University Press, Cambridge
Bessey EA (1942) Some problems in fungus phylogeny. Mycologia 34:355–379
Cain RF (1972) Evolution of the fungi. Mycologia 64:1–14
Demoulin V (1974) The origin of Ascomycetes and Basidiomycetes, the case for a red algal ancestry. Bot Rev 40:315–345
Gäumann EA (1952) The fungi, a description of their morphological features and evolutionary development. Hafner Publ., New York
LéJohn HB (1971) Enzyme regulation, lysine pathways, and cell wall structures as indicators of major lines of evolution in fungi. Nature 231:164–168
LéJohn HB (1974) Biochemical parameters of fungal phylogenetics. Evol Biol 7:79–125
Ragan MA, Chapman DJ (1978) A biochemical phylogeny of the protists. Academic Press, New York
Savile DBO (1968) Possible interrelationships between fungal groups. In: The fungi, an advanced treatise. Ainsworth GC, Susmann AS (Eds.), Academic Press, New York
Vogel HJ (1964) Distribution of lysine pathways among fungi: evolutionary implication. Am Naturalist 98:435–446
Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
Sugiyama J (1998) Relatedness, phylogeny, and evolution of the fungi. Mycoscience 39:487–511
Sugiyama J, Nishida H (1995) The higher fungi: their evolutionary relationships and implications for fungal systematics. In: Biodiversity and evolution. Arai R, Kato M, Doi Y (Eds.), The National Science Museum Foundation, Tokyo
Sugiyama J, Nagahama T, Nishida H (1996) Fungal diversity and phylogeny with emphasis on 18S ribosomal DNA sequence divergence. In: Microbial diversity in time and space. Colwell RR, Simidu U, Ohwada K (Eds.), Plenum Press, New York
Atkinson GF (1915) Phylogeny and relationships in the ascomycetes. Ann Missouri Botan Gardens 2:315–376
Gäumann EA, Dodge CW (1928) Comparative morphology of fungi. McGraw Hill, New York
Luttrell ES (1955) The ascostromatic ascomycetes. Mycologia 46:511–532
Bessey EA (1950) Morphology and Taxonomy of Fungi. The Blakiston Co., Philadelphia
Sachs J (1874) Lehrbuch der Botanik. 4th edition, Engelmann, Leipizig
Denison WC, Carroll GC (1966) The Primitive Ascomycete: ANew Look at an Old Problem. Mycologia 58:249–269
Kohlmeyer J (1973) Fungi from marine algae. Botanica Marina 16:201–215
Kohlmeyer J, Kohlmeyer E (1979) Marine Mycology, the Higher Fungi. Academic Press, San Francisco
Pringsheim N (1858) Beiträge zur Morphologie und Systematik der Algen. II. Die Saprolegnieen. Jahrb Wiss Bot 1:284–304
Kreisel H (1969) Grundzüge eines natürlichen systems der pilze. Cramer Lehre, Germany
Cavalier-Smith T (1987) The origin of fungi and pseudofungi. In: Evolutionary biology of the fungi. ADM Rayner, CM Brasier, D Moore (Eds.), Cambridge Univ Press, Cambridge
Vogel HJ (1965) Lysine biosynthesis and evolution: fungi, gymnosperms and angiosperms. In: Evolving genes and proteins. Bryson V, Vogel HJ (Eds.), Academic Press, New York
Cavalier-Smith T (1993) Kingdom Protozoa and its 18 phyla. Microbiol Rev 57:953–994
Bruns TD, Vilgalys R, Barns SM, Gonzalez D, Hibbett DS, Lane DJ, Simon L, Stickel S, Szaro TM, Weisburg WG, Sogin ML (1992) Evolutionary relationships within the Fungi: Analyses of nuclear small subunit rRNA sequences. Mol Phylogenet Evol 1:231–241 (1996) In: Introductory Mycology. 4th edition, John Wiley and Sons, New York
Van der Auwere G, deBaere R, Van der Peer Y, de Rijk P Van der Broeck I, de Wachter R (1995) The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides. Mol Biol Evol 12:671–678
Leipe DD, Wainright PO, Gunderson JH, Porter D, Patterson DJ, Valois F, Himmerich S, Sogin ML (1994) The stramenopiles from a molecular perspective: 16S-likerRNAsequences from Labyrinthuloides minuta and Cafeteria roenbergenis. Phycologia 33:369–377
Castlebury LA, Domier LL (1998) Small subunit ribosomal RNA gene phylogeny of Plasmodiophora brassicae. Mycologia 90:102–107
Baldauf SL, Palmer JD (1993) Animals and fungi are each other’s closest relatives: Congruent evidence from multiple proteins. Proc Nat Acad USA 90:11558–11562
Sogin ML, EIwood HJ, Gunderson JH (1989) Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science 243:75–77
Wainright PO, Hinkle G, Sogin ML, Stickel SK (1993) Monophyletic origins of the Metazoa: an evolutionary link with fungi. Science 260:340–342
Nikoh N, Hayase N, Iwabe N, Kuma K, Miyata T (1994) Phylogenetic relationships of the kingdoms Animalia, Plantae, and Fungi inferred from 23 different protein species. Mol Biol Evol 11:762–768
Veuthey AL, Bittar G (1998) Phylogenetic relationships of Fungi, Plantae, and Animalia inferred from homologous comparison of ribosomal proteins. J Mol Evol 47:81–92
Walker WF(1984) 5S ribosomal RNA sequences from Zygomycotina and evolutionary implications. Syst Appl Microbiol 5:448–456
Moss ST, Young TWK (1978) Phyletic considerations of the Harpellales and Asellariales (Trichomycetes, Zygomycotina) and the Kickxellales (Zygomycetes, Zygomycotina). Mycologia 70:944–963
Gunderson JH, Elwood H, Ingold A, Kindle K, Sogin ML (1987) Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes. Proc Natl Acad Sci USA 84: 5823–5827
Forster H, Coffey MD, Elwood H, Sogin ML (1990) Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution. Mycologia 82:306–312
Bowman BH, Taylor JW, Brownlee AG, Lee J, Lu SD, White TJ (1992) Molecular evolution of the fungi: Relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes. Mol Biol Evol 9:285–296
Kramer CL (1987) The Taphrinales. In: The expanding realm of yeast-like fungi. de Hoog GS, Smith MT, Weijman ACM (Eds.), Elsevier, Amsterdam
Tehler A (1988) A cladistic outline of the Eumycota. Cladistics 4:227–277
Gargas A, Taylor JW (1995) Phylogeny of discomycetes, and early radiations of apothecial Ascomycotina inferred from SSU rDNA sequence data. Exp Mycol 19:7–15
Nishida H, Sugiyama J (1993) Phylogenetic relationships among Taphrina, Saitoella, and other higher fungi. Mol Biol Evol 10:431–436
Nishida H, Sugiyama J (1994) Archiascomycetes: detection of a major new lineage within the Ascomycota. Mycoscience 35:361–366
Nishida H, Blanz PA, Sugiyama J (1993) The higher fungus Protomyces inouyei has two group I introns in the 18S rRNA gene. J Mol Evol 37:25–28
Blackwell M, Hibbett DS, Taylor JW, Spatafora JW (2006) Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha). Mycologia 98(6):829–837
Hibbett DS, Grimaldi D, Donoghue MJ (1995) Cretaceous mushrooms in amber. Nature 377:487
Hibbett DS, Grimaldi D, Donoghue MJ (1991) Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of homobasidiomycetes. Am J Bot 84:981
Hillis DM, Moritz C, Mable C (Eds.) (1996) In: Molecular Systematics. 2nd edition, Sinauer Associates, Sunderland, Massachusetts
Paquin B, Laforest MJ, Forget L, Roewer I., Wang Z, Longcore J, Lang BF (1997) The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr Genet 31:380–395
Ridley M (1996) In: Evolution. 2nd edition, Blackwell Science, Cambridge, Massachusetts
Taylor JW (1998) Molecular systematics and evolution. (Abstract) 6th Intern Mycol Congr (IMC6), Jerusalem, Israel
Barr DJ (1992) Evolution and kingdoms of organisms from the perspective of a mycologist. Mycologia 84:1–11
Redecker D, Raab P (2006) Phylogeny of the Glomeromycota (arbuscular mycorrhizal fungi): recent developments and new gene markers. Mycologia 98:885–895
Whittaker RH (1969) New concepts of kingdoms of organisms. Science 163:150–160
Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 74(11):5088–5090
Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87(12): 4576–4579
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, et al. (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547
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Manoharachary, C., Kunwar, I.K., Reddy, S.V. (2010). Biodiversity, phylogeny and evolution of fungi. In: Sharma, V.P. (eds) Nature at Work: Ongoing Saga of Evolution. Springer, New Delhi. https://doi.org/10.1007/978-81-8489-992-4_10
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DOI: https://doi.org/10.1007/978-81-8489-992-4_10
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