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Comparison of Glycosyltransferase Families Using the Profile Hidden Markov Model

  • Norihiro Kikuchi

Abstract

Several research groups have attempted to classify glycosyltransferases using sequence similarities, e.g., the CAZy (Carbohydrate-Active enZYmes) database (Coutinho et al. 2003). However, the structural, functional, and evolutionary relationships of glycosyltransferases are still unknown. We classified 47 of the 60 families from the CAZy database into four superfamilies using the profile hidden Markov model (HMM) method to reveal relationships between structure and function in glycosyltransferases.

Keywords

Hide Markov Model Nucleotide Sugar Profile Hide Markov Model Glycosylation Pathway CAZy Family 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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References

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Copyright information

© Springer 2008

Authors and Affiliations

  • Norihiro Kikuchi
    • 1
  1. 1.Mitsui Knowledge Industry Co., Ltd.Bioscience GroupTokyoJapan

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