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Twofold Helical Molecular Assemblies in Organic Crystals: Chirality Generation and Handedness Determination

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Advances in Organic Crystal Chemistry

Abstract

Conventionally, twofold helical molecular assemblies in organic crystals have been considered from space groups but not from space geometry, leading to an obscure understanding of their chirality generation. The reason is that identical twofold helical assemblies are obtained by twofold screw operations with clockwise or anticlockwise rotations by 180°, while enantiomeric twofold helical assemblies are observed even from achiral molecules. On the basis of three-dimensional space geometry, we succeeded in exposing chirality which has been hidden for a long time. The key for the success consists of the following two methods: one is multipoint approximation with lines and faces for representing materials and the other is tilt alignments along a helical axis for discriminating chirality and handedness. These methods proved generation of real chirality in twofold helical assemblies of organic molecules and further led us to the fact that the twofold helices exhibit three-axial chirality toward right-to-left, up-to-down, and in-to-out directions. Such helices are bundled together in various ways to provide crystals with the corresponding space groups. The bundling of only one-handed preferred helices affords one-handed crystals, explaining chiral crystallization of achiral molecules from a geometrical viewpoint.

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References

  1. M. Gardner, The New Ambidextrous Universe (W. H. Freeman and Company, New York, 1999)

    Google Scholar 

  2. R.A. Hegstrom, D.K. Kondepudi, The handedness of the universe. Sci. Am. 262, 108 (1990)

    Article  Google Scholar 

  3. J.-M. Lehn, Supramolecular Chemistry: Concepts and Perspectives (VCH, Weinheim, 1995)

    Book  Google Scholar 

  4. G.R. Desiraju, The Crystal as a Supramolecular Entity (Wiley, Chichester, 1995)

    Google Scholar 

  5. J.P. Glusker, K.N. Trueblood, Crystal Structure Analysis: A Primer, 3rd edn. (Oxford University Press, Oxford, 2010)

    Google Scholar 

  6. T. Hahn, Edited. International Tables for Crystallography, vol A, Space-Group Symmetry (Kluwer Academic Publishers, London, 1983 (1st Ed), 2002 (5th Ed)).

    Google Scholar 

  7. D.W. Bennett, Understanding Single-Crystal X-Ray Crystallography (Wiley-VCH, Weinheim, 2010)

    Google Scholar 

  8. R.S. Cahn, C.K. Ingold, V. Prelog, Angew. Chem. Int. Ed. 5, 385 (1966)

    Article  CAS  Google Scholar 

  9. A. Tanaka, I. Hisaki, N. Tohnai, M. Miyata, Chem. Asian. J. 2, 230 (2007)

    Article  CAS  Google Scholar 

  10. I. Hisaki, T. Sasaki, K. Sakaguchi, W.T. Liu, N. Tohnai, M. Miyata, Chem. Commun. 48, 2219 (2012)

    Article  CAS  Google Scholar 

  11. A.I. Kitaigorodskii, Molecular Crystals and Molecules (Academic, New York, 1973)

    Google Scholar 

  12. Cambridge Structural Database, http://www.ccdc.cam.ac.uk/products/csd/statistics/

  13. J. Jacques, A. Collet, S.H. Wilen, Enantiomers, Racemates, and Resolutions (Krieger, Malabar, 1991)

    Google Scholar 

  14. T. Matsuura, H. Koshima, J. Synth. Org. Chem. Jpn. 56, 268/466 (1998)

    Article  Google Scholar 

  15. T. Matsuura, H. Koshima, J. Photochem. Photobiol. C, Photo. Rev. 6, 7 (2005)

    Article  CAS  Google Scholar 

  16. K. Miki, A. Masui, N. Kasai, M. Miyata, M. Shibakami, K. Takemoto, J. Am. Chem. Soc. 110, 6594 (1988)

    Article  CAS  Google Scholar 

  17. M. Miyata, M. Shibakami, S. Chirachanchai, K. Takemoto, N. Kasai, K. Miki, Nature 343, 446 (1990)

    Article  CAS  Google Scholar 

  18. M. Miyata, K. Sada, “Comprehensive Supramolecular Chemistry”, vol 6, “Solid State Supramolecular Chemistry: Crystal Engineering”, ed. by J.-M. Lehn (Pergamon, Oxford, 1996), p. 147

    Google Scholar 

  19. M. Miyata, K. Sada, N. Yoswathananont, in Encyclopedia of Supramolecular Chemistry, ed. by J.L. Atwood, J.W. Steed, vol. 1 (Marcel Dekker, New York, 2004), p. 441

    Google Scholar 

  20. M. Miyata, N. Tohnai, I. Hisaki, Molecules 12, 1973 (2007)

    Article  CAS  Google Scholar 

  21. K. Nakano, K. Aburaya, I. Hisaki, N. Tohnai, M. Miyata, Chem. Rec. 9, 124 (2009)

    Article  CAS  Google Scholar 

  22. M. Miyata, K. Sada, K. Nakano, N. Tohnai, in Bottom-Up Nanofabrication, Chapter 79, eds. by H.S. Nalwa, K. Ariga, vol 3, Chapter 6 (American Scientific Publication, Stevenson Ranch, 2009), p. 147

    Google Scholar 

  23. T. Watabe, I. Hisaki, N. Tohnai, M. Miyata, Chem. Lett. 36, 234 (2007)

    Article  CAS  Google Scholar 

  24. T. Watabe, K. Kobayashi, I. Hisaki, N. Tohnai, M. Miyata, Bull. Chem. Soc. Jpn. 80, 464 (2007)

    Article  CAS  Google Scholar 

  25. T. Watabe, D. Yoshikawa, I. Hisaki, N. Tohnai, M. Miyata, Chem. Lett. 35, 806 (2006)

    Article  CAS  Google Scholar 

  26. I. Hisaki, T. Watabe, Y. Kogami, N. Tohnai, M. Miyata, Chem. Lett. 35, 1274 (2006)

    Article  CAS  Google Scholar 

  27. I. Hisaki, N. Shizuki, K. Aburaya, M. Katsuta, N. Tohnai, M. Miyata, Cryst. Growth Des. 9, 1280 (2009)

    Article  CAS  Google Scholar 

  28. I. Hisaki, N. Shizuki, T. Sasaki, Y. Ito, N. Tohnai, M. Miyata, Cryst. Growth Des. 10, 5262 (2010)

    Article  CAS  Google Scholar 

  29. T. Sasaki, N. Shizuki, E. Hiraishi, N. Tohnai, M. Miyata, Org. Biomol. Chem. 10, 5985 (2012)

    Article  CAS  Google Scholar 

  30. A. Tanaka, K. Inoue, I. Hisaki, N. Tohnai, M. Miyata, A. Matsumoto, Angew. Chem. Int. Ed. 45, 4142 (2006)

    Article  CAS  Google Scholar 

  31. M. Miyata, N. Tohnai, I. Hisaki, Acc. Chem. Res. 40, 694 (2007)

    Article  CAS  Google Scholar 

  32. I. Hisaki, N. Tohnai, M. Miyata, Chirality 20, 330 (2008)

    Article  CAS  Google Scholar 

  33. I. Hisaki, T. Sasaki, N. Tohnai, M. Miyata, Chem. Eur. J. (Concept) 18, 10066 (2012)

    Article  CAS  Google Scholar 

  34. I. Hisaki, T. Sasaki, N. Tohnai, M. Miyata, J. Synth. Org. Chem. Jpn. 70, 908 (2012)

    Article  CAS  Google Scholar 

  35. T. Sasaki, I. Hisaki, N. Miyano, N. Tohnai, K. Morimoto, H. Sato, S. Tsuzuki, M. Miyata, Nat. Commun. 4, 1787/1–7 (2013). doi:10.1038/ncomms2756

    Article  Google Scholar 

  36. T. Sasaki, Y. Ida, I. Hisaki, T. Yuge, Y. Uchida, N. Tohnai, M. Miyata, Chem. Eur. J. 20, 2478 (2014)

    Article  CAS  Google Scholar 

  37. G.R. Desiraju, Angew. Chem. Int. Ed. 34, 2311 (1995)

    Article  CAS  Google Scholar 

  38. P. Ganguly, G.R. Desiraju, CrystEngComm 12, 817 (2010)

    Article  CAS  Google Scholar 

  39. G.R. Desiraju, T. Steiner, The Weak Hydrogen Bond (Oxford University Press, Oxford, 1999)

    Google Scholar 

  40. G. Gilla, P. Gilli, The Nature of the Hydrogen Bond (Oxford University Press, Oxford, 2009)

    Book  Google Scholar 

  41. M. Nishio, M. Hirota, Y. Umezawa, The CH/π Interaction – Evidence, Nature, and Consequences (Wiley-VCH, New York, 1998)

    Google Scholar 

  42. E.R.T. Tiekink, J. Zukerman, The Importance of Pi-Interactions in Crystal Engineering (Wiley, Schpector, 2012)

    Book  Google Scholar 

  43. G.R. Desiraju, Crystal Engineering (Elsevier, Amsterdam, 1989)

    Google Scholar 

  44. B. Moulton, M.J. Zaworotko, Chem. Rev. 101, 1629 (2001)

    Google Scholar 

  45. D.B. Amabilino (ed.), Chirality at the Nanoscale: Nanoparticles, Surfaces, Materials and More (Wiley-VCH, Weinheim, 2009)

    Google Scholar 

  46. T. Sasaki, Y. Ida, A. Tanaka, I. Hisaki, N. Tohnai, M. Miyata, CrystEngComm 15, 8237 (2013)

    Article  CAS  Google Scholar 

  47. T. Sasaki, I. Hisaki, S. Tsuzuki, N. Tohnai, M. Miyata, CrystEngComm 14, 5749 (2012)

    Article  CAS  Google Scholar 

  48. M.C. Etter, Acc. Chem. Res. 23, 120 (1990)

    Article  CAS  Google Scholar 

  49. J. Bernstein, R.E. Davis, L. Shimoni, N.L. Chang, Angew. Chem. 1995, 107 (1689), Angew. Chem. Int. Ed. 1995, 34, 1555

    Google Scholar 

  50. J. Grell, J. Bernstein, G. Tinhofer, Acta Crystallogr. Sect. B 55, 1030 (1999)

    Article  Google Scholar 

  51. K. Sada, T. Tani, S. Shinkai, Synlett 15, 2364 (2006)

    Article  Google Scholar 

  52. T. Yuge, N. Tohnai, T. Fukuda, I. Hisaki, M. Miyata, Chem. Eur. J. 13, 4163 (2007)

    Article  CAS  Google Scholar 

  53. T. Yuge, T. Sakai, N. Kai, I. Hisaki, M. Miyata, N. Tohnai, Chem. Eur. J. 14, 2984 (2008)

    Article  CAS  Google Scholar 

  54. C.W. Bunn, Proc. R. Soc. A180, 67 (1942)

    Article  Google Scholar 

Download references

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Correspondence to Mikiji Miyata .

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Miyata, M., Hisaki, I. (2015). Twofold Helical Molecular Assemblies in Organic Crystals: Chirality Generation and Handedness Determination. In: Tamura, R., Miyata, M. (eds) Advances in Organic Crystal Chemistry. Springer, Tokyo. https://doi.org/10.1007/978-4-431-55555-1_19

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