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Generalities on Graphs

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Topological Crystallography

Part of the book series: Surveys and Tutorials in the Applied Mathematical Sciences ((STAMS,volume 6))

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Abstract

A graph is an abstract concept describing a set of objects where some pairs of objects are connected by links.As mentioned in Notes in the previous chapter, the notion of graphs was implicitly used by Leonhard Euler (1707–1783). Practically, we represent a graph by a diagram in a plane or space consisting of points (vertices) and lines (edges). Lines are allowed to intersect each other. In some applications, say communication networks and electric circuits, a diagram may be associated in a direct way with the objects considered. A crystal structure also provides us with a visible diagram in space when we represent atoms and chemical bonds by points and lines,Strictly speaking, the line representing a bond is virtual. See the beginning part of Chap. 7. respectively. In many other cases, however, a graph structure is not explicitly visible at first hand.

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Notes

  1. 1.

    As mentioned in Notes in the previous chapter, the notion of graphs was implicitly used by Leonhard Euler (1707–1783).

  2. 2.

    Strictly speaking, the line representing a bond is virtual. See the beginning part of Chap. 7.

  3. 3.

    Uber die Grundlagen der Geometrie, 1899.

  4. 4.

    In Euclid’s Elements, we find the following definitions. “A point is that which has no part”. “A line is breadthless length”. “A straight line is a line which lies evenly with the point on itself”.

  5. 5.

    I am, of course, not denying the significance of intuition in ongoing studies. Without intuitive thinking, theorems in geometry could not have been formulated. Also we must emphasize the importance of pictures in understanding any “formal” proof.

  6. 6.

    When a molecule is formed by atoms, the electron cloud of one atom and the electron cloud of another atom interact to form a new electron cloud. This formation, depending on the orbitals overlapping, is known as hybridisation, and is classified as sp, sp 2 and sp 3, etc.

  7. 7.

    In the case that X is an infinite graph, it is often natural to think of Aut(X) as a topological group with “compact-open topology” (see Sect. 9.6).

  8. 8.

    For instance, the honeycomb lattice depicted in Fig. 3.7 appears as the crystal structure of graphene, an allotrope of carbon. The term graphene was coined by Hanns-Peter Boehm (1962). The Nobel Prize in Physics for 2010 was awarded to Andre Geim and Konstantin Novoselov “for groundbreaking experiments regarding the two-dimensional material graphene”.

  9. 9.

    This is also called a tortoise shell pattern.

  10. 10.

    Such a lattice is called a period lattice of the honeycomb lattice.

  11. 11.

    Graphite as a mineral is one of the allotropes of carbon, and the most stable form under standard conditions. It has a layered, planar structure. In each layer, the carbon atoms are arranged in a honeycomb lattice.

  12. 12.

    When X is infinite, we need Zorn’s lemma to deduce the existence. Zorn’s lemma is known to be equivalent to Axiom of Choice.

  13. 13.

    The even or odd quality of an integer.

  14. 14.

    See Example 6.5 in Sect. 6.2 and Fig. 8.1 in Sect. 8.3.

References

  1. Artamkin IV (2006) Discrete Torelli theorem. Sbornik: Math 197:1109–1120

    Article  MathSciNet  MATH  Google Scholar 

  2. Auslander L, Kuranishi M (1957) On the holonomy group of locally Euclidean spaces. Ann Math 65:411–415

    Article  MathSciNet  MATH  Google Scholar 

  3. Bacher R, De La Harpe P, Nagnibeda T (1997) The lattice of integral flows and the lattice of integral cuts on a finite graph. Bull Soc Math Fr 125:167–198

    MATH  Google Scholar 

  4. Bader M, Klee WE, Thimm G (1997) The 3-regular nets with four and six vertices per unit cell. Z Kristallogr 212:553–558

    Article  Google Scholar 

  5. Baker M, Norine S (2007) Riemann-Roch and Abel-Jacobi theory on a finite graph. Adv Math 215:766–788

    Article  MathSciNet  MATH  Google Scholar 

  6. Baker M, Norine S (2009) Harmonic morphisms and hyperelliptic graphs. Int Math Res Notices (15):2914–2955

    MathSciNet  Google Scholar 

  7. Baker M, Faber X (2011) Metric properties of the tropical Abel-Jacobi map. J Algebraic Combin 33:349–381

    Article  MathSciNet  MATH  Google Scholar 

  8. Bass H (1992) The Ihara-Selberg zeta function of a tree lattice. Int J Math 3:717–797

    Article  MathSciNet  MATH  Google Scholar 

  9. Beukemann A, Klee WE (1992) Minimal nets. Z Kristallogr 201:37–51

    Article  MathSciNet  MATH  Google Scholar 

  10. Biggs NL, Lloyd EK, Wilson RJ (1999) Graph theory 1736–1936. Oxford University Press, Oxford

    Google Scholar 

  11. Biggs NL (1993) Algebraic graph theory. Cambridge University Press, Cambridge

    Google Scholar 

  12. Biggs NL (1997) Algebraic potential theory on graphs. Bull Lond Math Soc 29:641–682

    Article  MathSciNet  Google Scholar 

  13. Blatov V (2000) Search for isotypism in crystal structures by means of the graph theory. Acta Crystallogr A 56:178–188

    Article  Google Scholar 

  14. Bollmann W (1972) The basic concepts of the O-lattice theory. Surf Sci 31:1–11

    Article  Google Scholar 

  15. Bollobas B (1998) Modern graph theory. Springer, New York

    Book  MATH  Google Scholar 

  16. Brown KS (1972) Cohomology of groups. Springer, New York

    Google Scholar 

  17. Bryant PR (1967) Graph theory applied to electrical networks. In: Harary F (ed) Graph theory and theoretical physics. Academic, New York, pp 111–137

    Google Scholar 

  18. Caporaso L, Viviani F (2010) Torelli theorem for graphs and tropical curves. Duke Math J 153:129–171

    Article  MathSciNet  MATH  Google Scholar 

  19. Charlap LS (1986) Bieberbach groups and flat manifolds. Springer, New York

    Book  MATH  Google Scholar 

  20. Chung SJ, Hahn T, Klee WE (1984) Nomenclature and generation of three-periodic nets: the vector method. Acta Crystallogr A 40:42–50

    Article  MathSciNet  MATH  Google Scholar 

  21. Conway JH, Burgiel H, Goodman-Strauss C (2008) The symmetries of things. A K Peters Ltd, Wellesley

    MATH  Google Scholar 

  22. Coxeter HSM (1955) On Laves’ graph of girth ten. Can J Math 7:18–23

    Article  MathSciNet  MATH  Google Scholar 

  23. Coxeter HSM (1973) Regular polytopes. Dover, New York

    Google Scholar 

  24. Coxeter HSM (1974) Regular complex polytopes. Cambridge University Press, Cambridge

    MATH  Google Scholar 

  25. Cromwell P (1999) Polyhedra. Cambridge University Press, Cambridge

    MATH  Google Scholar 

  26. Curtarolo S, Morgan D, Persson K, Rodgers J, Ceder G (2003) Predicting crystal structures with data mining of quantum calculations. Phys Rev Lett 91:135503

    Article  Google Scholar 

  27. Dai J, Li Z, Yang J (2010) Boron K 4 crystal: a stable chiral three-dimensional sp2 network. Phys Chem Chem Phys 12:12420–12422

    Article  Google Scholar 

  28. Danzer L. Something about [10, 3] a . Unpublished

    Google Scholar 

  29. Delgado-Friedrichs O, Dress A, Huson D, Klinowski J, Mackay A (1999) Systematic enumeration of crystalline networks. Nature 400:644–647

    Article  Google Scholar 

  30. Delgado-Friedrichs O, O’Keeffe M (2003) Identification of and symmetry computation for crystal nets. Acta Crystallogr A 59:351–360

    Article  MathSciNet  Google Scholar 

  31. Delgado-Friedrichs O, O’Keeffe M, Yaghin OM (2003) Three-periodic nets and tilings: regular and quasiregular nets. Acta Crystallogr A 59:22–27

    Article  Google Scholar 

  32. Delgado-Friedrichs O (2004) Barycentric drawings of periodic graphs. Lect Notes Comput Sci 2912:178–189

    Article  MathSciNet  Google Scholar 

  33. Delgado-Friedrichs O, Foster MD, O’Keeffe M, Proserpio DM, Treacy MMJ, Yaghi OM (2005) What do we know about three-periodic nets? J Solid State Chem 178:2533–2554

    Article  Google Scholar 

  34. Delgado-Friedrichs O, O’Keeffe M (2007) Three-periodic tilings and nets: face-transitive tilings and edge-transitive nets revisited. Acta Crystallogr A 63:344–347

    Article  MathSciNet  Google Scholar 

  35. Delgado-Friedrichs O, O’Keeffe M (2009) Edge-transitive lattice nets. Acta Crystallogr A 65:360–363

    Article  MathSciNet  Google Scholar 

  36. Diestel R (2006) Graph theory. Springer, New York

    Google Scholar 

  37. Dixmier J (1981) Von Neumann algebras. North-Holland, Amsterdam

    MATH  Google Scholar 

  38. Ebeling W (1994) Lattices and codes. Vieweg, Wiesbaden

    Book  MATH  Google Scholar 

  39. Eells J, Sampson JH (1964) Harmonic mappings of Riemannian manifolds. Am J Math 86:109–160

    Article  MathSciNet  MATH  Google Scholar 

  40. Eells J, Fuglede B (2001) Harmonic maps between Riemannian polyhedra. Cambridge University Press, Cambridge

    MATH  Google Scholar 

  41. Eon J-G (1998) Geometrical relationships between nets mapped on isomorphic quotient graphs: examples. J Solid State Chem 138:55–65

    Article  Google Scholar 

  42. Eon J-G (1999) Archetypes and other embeddings of periodic nets generated by orthogonal projection. J Solid State Chem 147:429–437

    Article  Google Scholar 

  43. Eon J-G (2011) Euclidean embeddings of periodic nets: definition of a topologically induced complete set of geometric descriptors for crystal structures. Acta Crystallogr A 67:68–86

    Article  MathSciNet  Google Scholar 

  44. Eon J-G, Klee WE, Souvignier B, Rutherford JS (2012) Graph-theory in crystallography and crystal chemistry. Oxford University Press with IUCr (to be published)

    Google Scholar 

  45. Greenberg M (1971) Lectures on algebraic topology. Benjamin, Menlo Park

    Google Scholar 

  46. Gromov M (1999) Metric structures for Riemannian and non-Riemannian spaces. Birkhäuser, Basel

    MATH  Google Scholar 

  47. Harper PG (1955) Single band motion of conduction electrons in a uniform magnetic field. Proc Phys Soc Lond A 68:874–878

    Article  MATH  Google Scholar 

  48. Hashimoto K (1990) On zeta and L-functions of finite graphs. Int J Math 1:381–396

    Article  MATH  Google Scholar 

  49. Hörmander L (1983) The analysis of linear partial differential operators I. Springer, New York

    Google Scholar 

  50. Hyde ST, O’Keeffe M, Proserpio DM (2008) A short history of an elusive yet ubiquitous structure in chemistry, materials, and mathematics. Angew Chem Int Ed 47:7996–8000

    Article  Google Scholar 

  51. Ihara Y (1966) On discrete subgroups of the two by two projective linear group over p-adic fields. J Math Soc Jpn 18:219–235

    Article  MathSciNet  MATH  Google Scholar 

  52. Itoh M, Kotani M, Naito H, Kawazoe Y, Adschiri T (2009) New metallic carbon crystal. Phys Rev Lett 102:055703

    Article  Google Scholar 

  53. Jost J (1996) Generalized harmonic maps between metric spaces. In: Geometric analysis and calculus of variations. International Press, Cambridge, pp 143–174

    Google Scholar 

  54. Katsuda A, Sunada T (1990) Closed orbits in homology classes. Publ Math IHES 71:5–32

    MathSciNet  MATH  Google Scholar 

  55. Klein H-J (1996) Systematic generation of models for crystal structures. Math Model Sci Comput 6:325–330

    Google Scholar 

  56. Koch E, Fischer W (1995) Sphere packings with three contacts per sphere and the problem of the least dense sphere packing. Z Kristallogr 210:407–414

    Article  Google Scholar 

  57. Kotani M, Sunada T (2000) Zeta functions of finite graphs. J Math Sci Univ Tokyo 7:7–25

    MathSciNet  MATH  Google Scholar 

  58. Kotani M, Sunada T (2000) Standard realizations of crystal lattices via harmonic maps. Trans Am Math Soc 353:1–20

    Article  MathSciNet  Google Scholar 

  59. Kotani M, Sunada T (2000) Jacobian tori associated with a finite graph and its abelian covering graphs. Adv Appl Math 24:89–110

    Article  MathSciNet  MATH  Google Scholar 

  60. Kotani M, Sunada T (2000) Albanese maps and off diagonal long time asymptotics for the heat kernel. Commun Math Phys 209:633–670

    Article  MathSciNet  MATH  Google Scholar 

  61. Kotani M, Sunada T (2003) Spectral geometry of crystal lattices. Contemporary Math 338:271–305

    Article  MathSciNet  Google Scholar 

  62. Kotani M, Sunada T (2006) Large deviation and the tangent cone at infinity of a crystal lattice. Math Z 254:837–870

    Article  MathSciNet  MATH  Google Scholar 

  63. Krámli A, Szász D (1983) Random walks with internal degree of freedom, I. Local limit theorem. Z. Wahrscheinlichkeittheorie 63:85–95

    Article  MATH  Google Scholar 

  64. Kuchment P (1993) Floquet theory for partial differential operators. Birkhäuser, Basel

    Book  Google Scholar 

  65. Lang S (1987) Linear algebra. Springer, Berlin

    MATH  Google Scholar 

  66. Magnus W, Karrass A, Solitar D (1976) Combinatorial group theory. Dover, New York

    MATH  Google Scholar 

  67. Mikhalkin G, Zharkov I (2008) Tropical curves, their Jacobians and theta functions. In: Alexeev V et al (eds) Curves and abelian varieties. International conference, 2007. Contemporary Math 465:203–230

    Article  MathSciNet  Google Scholar 

  68. Milnor J (1969) Morse theory. Princeton University Press, Princeton

    Google Scholar 

  69. Nagano T, Smith B (1975) Minimal varieties and harmonic maps in tori. Commun Math Helv 50:249–265

    Article  MATH  Google Scholar 

  70. Nagnibeda T (1997) The Jacobian of a finite graph. Contemporary Math 206:149–151

    Article  MathSciNet  Google Scholar 

  71. Neukirch J (1999) Algebraic number theory. Springer, Berlin

    Book  MATH  Google Scholar 

  72. Newman P, Stoy G, Thompson E (1994) Groups and geometry. Oxford University Press, Oxford

    Google Scholar 

  73. Oganov A (ed) (2010) Modern methods of crystal structure prediction. Wiley-VCH, Berlin

    Google Scholar 

  74. Oda T, Seshadri CS (1979) Compactifications of the generalized Jacobian variety. Trans Am Math Soc 253:1–90

    Article  MathSciNet  MATH  Google Scholar 

  75. Oda T (2011) Voronoi tilings hidden in crystals—the case of maximal abelian coverings arXiv:1204.6555 [math.CO]

    Google Scholar 

  76. O’Keeffe M (1991) N-dimensional diamond, sodalite and rare sphere packings. Acta Crystallogr A 47:748–753

    Article  Google Scholar 

  77. O’Keeffe M, Peskov MA, Ramsden SJ, Yaghi OM (2008) The reticular chemistry structure resource (RCSR) database of, and symbols for, crystal nets. Acc Chem Res 41:1782–1789

    Article  Google Scholar 

  78. Peresypkina E, Blatov V (2000) Molecular coordination numbers in crystal structures of organic compounds. Acta Crystallogr B 56:501–511

    Article  Google Scholar 

  79. Radin C (1987) Low temperature and the origin of crystalline symmetry. Int J Mod Phys B 1:1157–1191

    Article  MathSciNet  Google Scholar 

  80. Radin C (1991) Global order from local sources. Bull AMS 25:335–364

    Article  MathSciNet  MATH  Google Scholar 

  81. Rangnathan S (1966) On the geometry of coincidence-site lattices. Acta Crystallogr 21: 197–199

    Article  Google Scholar 

  82. Resnikoff H, Wells Jr R (1998) Wavelet analysis. Springer, Heidelberg

    Book  MATH  Google Scholar 

  83. Scott L (2012) A primer on ice (in preparation)

    Google Scholar 

  84. Serre JP (1980) Trees. Springer, Berlin

    Google Scholar 

  85. Shubin M, Sunada T (2006) Mathematical theory of lattice vibrations and specific heat. Pure Appl Math Q 2:745–777

    MathSciNet  MATH  Google Scholar 

  86. Strong R, Packard CJ (2004) Systematic prediction of crystal structures: an application to sp 3-hybridized carbon polymorphs. Phys Rev B 70:045101

    Article  Google Scholar 

  87. Sunada T (1984) Geodesic flows and geodesic random walks. In: Geometry of geodesics and related topics (Tokyo, 1982). Advanced Studies in Pure Mathematics, vol 3. North-Holland, Amsterdam, pp 47–85

    Google Scholar 

  88. Sunada T (1985) Riemannian coverings and isospectral manifolds. Ann Math 121:169–186

    Article  MathSciNet  MATH  Google Scholar 

  89. Sunada T (1986) L-functions in geometry and some applications. In: K. Shiohama, T Sakai, T. Sunada (ed) Proceedings of the 17th International Taniguchi symposium, 1985. Curvature and topology of Riemannian manifolds. Lecturer notes in mathematics, vol 1201. Springer, Berlin, pp 266–284

    Google Scholar 

  90. Sunada T (1988) Fundamental groups and Laplacians. In: T. Sunada (ed) Proceedings of the Taniguchi symposium, 1987. Geometry and analysis on manifolds. Lecture notes in mathematics, vol 1339. Springer, Berlin, pp 248–277

    Google Scholar 

  91. Sunada T (1989) Unitary representations of fundamental groups and the spectrum of twisted Laplacians. Topology 28:125–132

    Article  MathSciNet  MATH  Google Scholar 

  92. Sunada T (1994) A discrete analogue of periodic magnetic Schrödinger operators. Contemporary Math 173:283–299

    Article  MathSciNet  Google Scholar 

  93. Sunada T (2006) Why do diamonds look so beautiful? Springer, Tokyo (in Japanese)

    Google Scholar 

  94. Sunada T (2008) Crystals that nature might miss creating. Notices Am Math Soc 55:208–215

    MathSciNet  MATH  Google Scholar 

  95. Sunada T (2008) Discrete geometric analysis. In: Exner P, Keating JP, Kuchment P, Sunada T, Teplyaev A (eds) Geometry on Graphs and Its Applications, Proceedings of symposia in pure mathematics, vol 77, pp 51–86

    Google Scholar 

  96. Sunada T (2012) Lecture on topological crystallography. Jpn J Math 7:1–39

    Article  MathSciNet  MATH  Google Scholar 

  97. Sunada T (2012) Commensurable Euclidean lattices (in preparation)

    Google Scholar 

  98. Tanaka R (2011) Large deviation on a covering graph with group of polynomial growth. Math Z 267:803–833

    Article  MathSciNet  MATH  Google Scholar 

  99. Tanaka R (2011) Hydrodynamic limit for weakly asymmetric exclusion processes in crystal lattices. arXiv:1105.6220v1 [math.PR]

    Google Scholar 

  100. Tate T, Sunada T (2012) Asymptotic behavior of quantum walks on the line. J Funct Anal 262:2608–2645

    Article  MathSciNet  MATH  Google Scholar 

  101. Terras A (2010) Zeta functions of graphs: a stroll through the garden. Cambridge Studies in Advanced Mathematics, Cambridge

    Google Scholar 

  102. Tutte WT (1960) Convex representations of graphs. Proc Lond Math Soc 10:304–320

    Article  MathSciNet  MATH  Google Scholar 

  103. Tutte WT (1963) How to draw a graph. Proc Lond Math Soc 13:743–767

    Article  MathSciNet  MATH  Google Scholar 

  104. Uralawa H (2000) A discrete analogue of the harmonic morphism and Green kernel comparison theorems. Glasgow Math J 42:319–334

    Article  Google Scholar 

  105. van Lint JH, Wilson RM (1992) A course in combinatorics. Cambridge University Press, Cambridge

    MATH  Google Scholar 

  106. van der Schoot A (2001) Kepler’s search for forms and proportion. Renaissance Stud 15: 59–78

    Article  Google Scholar 

  107. Vick JW (1994) Homology theory, 2nd edn. Springer, New York

    Book  MATH  Google Scholar 

  108. Wells AF (1954) The geometrical basis of crystal chemistry. Acta Crystallogr 7:535

    Article  Google Scholar 

  109. Wells AF (1977) Three dimensional nets and polyhedra. Wiley, New York

    Google Scholar 

  110. Weyl H (1983) Symmetry. Princeton University Press, Princeton

    Google Scholar 

  111. Wolf JA (1967) Spaces of constant curvature. McGraw-Hill, New York

    MATH  Google Scholar 

  112. Woess W (2000) Random walks on infinite graphs and groups. Cambridge University Press, Cambridge

    Book  MATH  Google Scholar 

  113. Wood EA (1977) Crystals and light, an introduction to optical crystallography, 2nd revised edn. Dover, New York

    Google Scholar 

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Sunada, T. (2013). Generalities on Graphs. In: Topological Crystallography. Surveys and Tutorials in the Applied Mathematical Sciences, vol 6. Springer, Tokyo. https://doi.org/10.1007/978-4-431-54177-6_3

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