Comparative phylogeography: The use of parasites for insights into host history

  • Caroline M. Nieberding
  • Serge Morand


Phylogeographical Structure Phylogeographical Pattern Parasite Lineage Pocket Gopher Syst Biol 


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  1. Agostini HT, Ryschkewitsch CF, Stoner GL (1996) Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals. J Clin Microbiol 34:159–164PubMedGoogle Scholar
  2. Althoff DM, Thompson JN (1999) Comparative phylogeographical structure of two parasitoid-host interactions. Evolution 53:818–825CrossRefGoogle Scholar
  3. Anderson RM, Jackson HC, May RM, Smith AM (1981) Population dynamics of fox rabies in Europe. Nature 289:765–771PubMedCrossRefGoogle Scholar
  4. Anderson TJ, Blouin MS, Beech RN (1998) Population biology of parasitic nematodes: Applications of genetic markers. Adv Parasitol 41:219–283PubMedCrossRefGoogle Scholar
  5. Anderson B, Olivieri I, Lourmas M, Stewart BA (2004) Comparative population genetic structures and local adaptation of two mutualists. Evolution 58:1730–1747PubMedCrossRefGoogle Scholar
  6. Asikainen K, Hanninen T, Henttonen H, Niemimaa J, Laakkonen J, Andersen HK, Bille N, Leirs H, Vaheri A, Plyusnin A (2000) Molecular evolution of Puumala hantavirus in Fennoscandia: Phylogenetic analysis of strains from two recolonization routes, Karelia and Denmark. J Gen Virol 81:2833–2841PubMedGoogle Scholar
  7. Avise JC (2000) Phylogeography. The history and formation of species. Harvard Univ Press, CambridgeGoogle Scholar
  8. Baer CF, Tripp DW, Bjorksten TA, Antolin MF (2004) Phylogeography of a parasitoid wasp (Diaeretiella rapae): No evidence of host-associated lineages. Mol Ecol 13:1859–1869PubMedCrossRefGoogle Scholar
  9. Beaumont MA (2005) Adaptation and speciation: What can F st tell us? Trends Ecol Evol 20:435–440PubMedCrossRefGoogle Scholar
  10. Blouin MS (1998) Mitochondrial DNA diversity in nematodes. J Helminthol 72:285–289PubMedCrossRefGoogle Scholar
  11. Blouin MS, Yowell CA, Courtney CH, Dame JB (1995) Host movement and the genetic structure of populations of parasitic nematodes. Genetics 141:1007–1014PubMedGoogle Scholar
  12. Blouin MS, Liu J, Berry RE (1999) Life cycle variation and the genetic structure of nematode populations. Heredity 83:253–259PubMedCrossRefGoogle Scholar
  13. Bohonak AJ (1999) Dispersal, gene flow, and population structure. Q Rev Biol 74:21–45PubMedCrossRefGoogle Scholar
  14. Bouillon DR, Dempson JB (1989) Metazoan parasite infections in landlocked and anadromous Arctic charr (Salvelinus alpinus, Linnaeus), and their use as indicators of movement to sea in young anadromous charr. Can J Zool 67:2478–2485CrossRefGoogle Scholar
  15. Bourhy H Kissi B, Audry L, Smreczak M, Sadkowska-Todys M, Kulonen K, Tordo N, Zmudzinski JF, Holmes EC (1999) Ecology and evolution of rabies virus in Europe. J Gen Virol 80:2545–2558PubMedGoogle Scholar
  16. Brown JM, Leebens-Mack JH, Thompson JN, Pellmyr O, Harrison RG (1997) Phylogeography and host association in a pollinating seed parasite Greya politella (Lepidoptera: Prodoxidae). Mol Ecol 6:215–224PubMedCrossRefGoogle Scholar
  17. Bucheli E, Gautschi B, Shykoff JA (2001) Differences in population structure of the anther smut fungus Microbotryum violaceum on two closely related host species, Silene latifolia and S. Dioica. Mol Ecol 10:285–294PubMedCrossRefGoogle Scholar
  18. Burban C, Petit RJ (2003) Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance. Mol Ecol 12:1487–1495PubMedCrossRefGoogle Scholar
  19. Burban C, Petit RJ, Carcreff E, Jactel H (1999) Range-wide variation of the maritime pine bast scale Matsucoccus feytaudi Duc. (Homoptera: Matsucoccidae) in relation to the genetic structure of its host. Mol Ecol 8:1593–1602PubMedCrossRefGoogle Scholar
  20. Clayton DH, Al-Tamimi S, Johnson KP (2003) The ecological basis of coevolutionary History. In: Page RDM (ed) Tangled trees: Phylogeny, cospeciation, and coevolution. Univ Chicago Press, Chicago, pp 330–350Google Scholar
  21. Clayton DH, Bush SE, Johnson KP (2004) Ecology of congruence: Past meets Present. Syst Biol 53:165–173PubMedCrossRefGoogle Scholar
  22. Cloutman DG (1988) Ancyrocephalids (Monogenea) of redbreast sunfish, bluegill, and their hybrids from Lake Norman, North Carolina: Remarks on monogeneans as indicators of parent species of hybrids. Proc Helminthol Soc Wash 55:108–110Google Scholar
  23. Dekonenko A, Yakimenko V, Ivanov A, Morozov V, Nikitin P, Khasanova S, Dzagurova T, Tkachenko E, Schmaljohn C (2003) Genetic similarity of Puumala viruses found in Finland and western Siberia and of the mitochondrial DNA of their rodent hosts suggests a common evolutionary origin. Infect Genet Evol 3:245–257PubMedCrossRefGoogle Scholar
  24. De Meeûs T, Renaud F (2003) Parasites within the new phylogeny of eukaryotes. Trends Parasitol 18:247–251CrossRefGoogle Scholar
  25. Derothe JM, Le Brun N, Loubes C, Perriat-Sanguinet M, Moulia C (2001) Susceptibility of natural hybrids between house mouse subspecies to Sarcocystis muris. Int J Parasitol 31:15–19PubMedCrossRefGoogle Scholar
  26. Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M, Blaser MJ, Graham DH, Vacher S, Perez-Perez GI, Yamaoka Y, Megraud F, Otto K, Reichard U, Katzowitsch E, Wang X, Achtman M, Suerbaum S (2003) Traces of human migrations in Helicobacter pylori populations. Science 299:1582–1585PubMedCrossRefGoogle Scholar
  27. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge Univ Press, CambridgeGoogle Scholar
  28. Gow JL, Noble LR, Rollinson D, Mimpfoundi R, Jones CS (2004) Breeding system and demography shape population genetic structure across ecological and climatic zones in the African freshwater snail, Bulinus forskalii (Gastropoda, Pulmonata), intermediate host for schistosomes. Mol Ecol 13:3561–3573PubMedCrossRefGoogle Scholar
  29. Hafner MS, Sudman PD, Villablanca FX, Spradling TA, Desmates JW, Nadler SA (1994) Disparate rates of molecular evolution in cospeciating hosts and parasites. Science 265:1087–1090PubMedCrossRefGoogle Scholar
  30. Hafner MS, Demastes JW, Hafner DJ, Spradling TA, Sudman PD, Nadler SA (1998) Age and movement of a hybrid zone: Implications for dispersal distance in pocket gophers and their chewing lice. Evolution 52:278–282CrossRefGoogle Scholar
  31. Haukisalmi V, Wickström LM, Hantula J, Henttonen H (2001) Taxonomy, genetic differentiation and Holarctic biogeography of Paranoplocephala spp. (Cestoda: Anoplocephalidae) in collared lemmings (Dicrostonyx; Arvicolinae). Biol J Linn Soc 74:171–196CrossRefGoogle Scholar
  32. Holmes EC (2004) The phylogeography of human viruses. Mol Ecol 13:745–756PubMedCrossRefGoogle Scholar
  33. Jerome CA, Ford BA (2002a) Comparative population structure and genetic diversity of Arceuthobium americanum (Viscaceae) and its Pinus host species: Insight into the host-parasite evolution in parastic angiosperms. Mol Ecol 11:407–420PubMedCrossRefGoogle Scholar
  34. Jerome CA, Ford BA (2002b) The discovery of three genetic races of dwarf mistletoe Arceuthobium americanum (Viscaceae) provides insight into the evolution of parasitic angiosperms. Mol Ecol 11:387–405PubMedCrossRefGoogle Scholar
  35. Johnson KP, Williams BL, Drown DM, Adams RJ, Clayton DH (2002) The population genetics of host specificity: Genetic differentiation in dove lice (Insecta: Phthiraptera). Mol Ecol 11:25–38PubMedCrossRefGoogle Scholar
  36. Johnson KP, Adams RJ, Page RD, Clayton DH (2003) When do parasites fail to speciate in response to host speciation? Syst Biol 52:37–47PubMedCrossRefGoogle Scholar
  37. Joseph L, Wilke T, Alpers D (2002) Reconciling genetic expectations from host specificity with historical population dynamics in an avian brood parasite, Horsfield’s Bronze-Cuckoo Chalcites basalis of Australia. Mol Ecol 11:829–837PubMedCrossRefGoogle Scholar
  38. Korber B, Muldoon M, Theiler J, Gao F, Gupta R, Lapedes A, Hahn BH, Wolinsky S, Bhattacharya T (2000) Timing the ancestor of the HIV-1 pandemic strains. Science 288:1789–1796PubMedCrossRefGoogle Scholar
  39. Legendre P, Makarenkov V (2002) Reconstruction of biogeographic and evolutionary networks using reticulograms. Syst Biol 51:199–216.PubMedCrossRefGoogle Scholar
  40. Lemey P, Pybus OG, Wang B, Saksena NK, Salemi M, Vandamme AM (2003) Tracing the origin and history of the HIV-2 epidemic. Proc Natl Acad Sci USA 100:6588–6592PubMedCrossRefGoogle Scholar
  41. MacKenzie K (2002) Parasites as biological tags in population studies of marine organisms: An update. Parasitology 124:S153–S163PubMedCrossRefGoogle Scholar
  42. McCoy KD, Boulinier T, Tirard C, Michalakis Y (2003) Host-dependent genetic structure of parasite populations: Differential dispersal of seabird tick host races. Evolution 57:288–296PubMedCrossRefGoogle Scholar
  43. Moulia C, Le Brun N, Dallas J, Orth A, Renaud F (1993) Experimental evidence of genetic determinism in high susceptibility to intestinal pinworm infection in mice: A hybrid zone model. Parasitology 106:387–393PubMedCrossRefGoogle Scholar
  44. Mulvey M, Aho JM, Lydeard C (1991) Comparative population genetic structure of a parasite (Fascioloides magna) and its definitive host. Evolution 45:1628–1640CrossRefGoogle Scholar
  45. Nadler SA (1995) Microevolution and the genetic structure of parasite populations. J Parasitol 81:395–403PubMedCrossRefGoogle Scholar
  46. Nichols R (2001) Gene trees and species trees are not the same. Trends Ecol Evol 16:358–364PubMedCrossRefGoogle Scholar
  47. Nieberding C, Morand S, Libois R, Michaux J (2004) A parasite reveals cryptic phylogeographical history of its host. Proc R Soc Lond B 271:2559–68CrossRefGoogle Scholar
  48. Nieberding C, Morand S, Douady CJ, Libois R, Michaux J (2005) Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palearctic region: Persistence of northern cryptic populations during ice ages? Mol Ecol 14:765–779PubMedCrossRefGoogle Scholar
  49. Nieberding C, Morand S, Libois R, Michaux J (2006) Parasites and the insular syndrome: The colonisation of the western Mediterranean islands by Heligmosomoides polygyrus (Dujardin, 1845). J Biogeogr (in press)Google Scholar
  50. Olson RE, Pratt I (1973) Parasites as indicators of English sole (Parophrys vetulus) nursery grounds. Trans Am Fish Soc 2:405–411CrossRefGoogle Scholar
  51. Page RDM (1994) Parallel phylogenies: Reconstructing the history of hostparasite Assemblages. Cladistics 10:155–173CrossRefGoogle Scholar
  52. ei]Page RDM (ed) (2003) Tangled trees: Phylogeny, cospeciation, and coevolution. Univ Chicago Press, ChicagoGoogle Scholar
  53. Page RDM, Lee PL, Becher SA, Griffiths R, Clayton DH (1998) A different tempo of mitochondrial DNA evolution in birds and their parasitic lice. Mol Phyl Evol 9:276–293CrossRefGoogle Scholar
  54. Paterson AM, Wallis GP, Wallis LJ, Gray RD (2000) Seabird and louse coevolution: Complex histories revealed by 12S rRNA sequences and reconciliation Analyses. Syst Biol 49:383–399PubMedCrossRefGoogle Scholar
  55. Pellmyr O, Leebens-Mack J, Thompson JN (1998) Herbivores and molecular clocks as tools in plant biogeography. Biol J Linn Soc 63:367–378CrossRefGoogle Scholar
  56. Poulin R, Morand S (2004) Parasite biodiversity. Smithsonian Inst Press, WashingtonGoogle Scholar
  57. Pybus OG, Holmes EC, Harvey PH (1999) The mid-depth method and HIV-1: A practical approach to testing hypotheses of viral epidemic history. Mol Biol Evol 186:953–959Google Scholar
  58. Reed DL, Hafner MS (1997) Host specificity of chewing lice on pocket gophers: A potential mechanism of cospeciation. J Mammal 78:655–660CrossRefGoogle Scholar
  59. Reed DL, Hafner MS (2002) Phylogenetic analysis of bacterial communities associated with ectoparasitic chewing lice of pocket gophers: A cultureindependent approach. Microb Ecol 44:78–93PubMedCrossRefGoogle Scholar
  60. Reed DL, Smith VS, Hammond SL, Rogers AR, Clayton DH (2004) Genetic analysis of lice supports direct contact between modern and archaic Humans. PLOS Biol 2:1972–1983CrossRefGoogle Scholar
  61. RicoHesse R, Harrison LM, Salas RA, Tovar D, Nisalak A, Ramos C, Boshell J, deMesa MTR, Nogueira RMR, daRosa AT (1997) Origins of dengue type 2 viruses associated with increased pathogenicity in the Americas. Virology 230:244–251CrossRefGoogle Scholar
  62. Rousset F (1997) Genetic differentiation and estimation of gene flow from Fstatistics under isolation by distance. Genetics 145:1219–1228PubMedGoogle Scholar
  63. Saruwatari L, Sugimoto C, Kitamura T, Ohno N, Sakai E, Shresta P, Hoa BK, Phi PTP, An HPH, Tuyet NTA, Honjo T, Kobayashi N, Zheng HY, Takasaka T, Yogo Y (2002) Asian domains of four major genotypes of JC virus, Af2, B1-b, CY and SC. Arch Virol 147:1–10PubMedCrossRefGoogle Scholar
  64. Sugimoto C, Hasegawa M, Kato A, Zheng HY, Ebihara H, Taguchi F, Kitamura T, Yogo Y (2002) Evolution of human polyomavirus JC. Implications for the population history of humans. J Mol Evol 54:285–297PubMedGoogle Scholar
  65. Sures B (2004) Environmental parasitology: Relevancy of parasites in monitoring environmental pollution. Trends Parasitol 20:170–177PubMedCrossRefGoogle Scholar
  66. Thomas F, Verneau O, De Meeûs T, Rena ud F (1996) Parasites as host evolutionary prints: Insights into host evolution from parasitological data. Int J Parasitol 26:677–686PubMedCrossRefGoogle Scholar
  67. Twiddy SS, Farrar JJ, Chau NV, Wills B, Gould EA, Gritsun T, Lloyd G, Holmes EC (2002) Phylogenetic relationships and differential selection pressures among genotypes of denge-2 virus. Virology 298:63–72PubMedCrossRefGoogle Scholar
  68. Whiteman NK, Parker PG (2005) Using parasites to infer host population history: A new rationale for parasite conservation. Anim Conserv 8:175–181CrossRefGoogle Scholar
  69. Wickström LM, Haukisalmi V, Varis S, Hantula J, Fedorov VB, Henttonen H (2003) Phylogeography of the circumpolar Paranoplocephala arctica species complex (Cestoda: Anoplocephalidae) parasitizing collared lemmings (Dicrostonyx spp.). Mol Ecol 12:3359–3371PubMedCrossRefGoogle Scholar

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© Springer-Verlag Tokyo 2006

Authors and Affiliations

  • Caroline M. Nieberding
  • Serge Morand

There are no affiliations available

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