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Sika Deer pp 27-41 | Cite as

Two Genetically Distinct Lineages of the Japanese Sika Deer Based on Mitochondrial Control Regions

  • Junco Nagata

To investigate genetic diversity among populations of sika deer, Cervus nippon, in Japan, nucleotide sequences (705–824 bases) of the mitochondrial control regions were determined in 61 animals from localities in the Japanese islands and 13 animals from three localities in China. A phylogenetic tree constructed by the sequences indicated that the Japanese sika deer are separated into two distinct lineages: the Northern Japan group (Hokkaido Island and most of the Honshu mainland) and the Southern Japan group (a part of the southern Honshu mainland, Kyushu Island and small islands around Kyushu Island). All sika deer examined in this study shared four to seven units of repetitive sequences (37–40 bases each) within the control region sequences. The number of tandem repeats was different between the two lineages. Six or seven repeats occurred in the northern group, while four or five repeats occurred in the southern group. Based on these control region data, separation of the two lineages was estimated to have occurred approximately 0.35 million years before present. The divergence of the two groups coincides with the last glacial period during the Pleistocene and suggests that there were at least two invasions from the continent to Japan possibly through the land bridges of the Korean Strait.

Keywords

Control Region Distinct Lineage Sika Deer Japanese Island Control Region Sequence 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Literature Cited

  1. Aquadro, C. F., and B. D. Greenberg. 1983. Human mitochondrial DNA variation and evolution: Analysis of nucleotide sequences from seven individuals. Genetics 103:287–312PubMedGoogle Scholar
  2. Brown, W. M., M. George, Jr., and A. C. Wilson. 1979. Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences USA 76:1967–1971CrossRefGoogle Scholar
  3. Brown, W. M., E. M. Prager, A. Wang, and A. C. Wilson. 1982. Mitochondrial sequences of primates: Tempo and mode of evolution. Journal of Molecular Evolution 18:225–239PubMedCrossRefGoogle Scholar
  4. Cook, C. E., Y. Wang, and G. Sensabaugh. 1999. A mitochondrial control region and cytochrome b phylogeny of sika deer (Cervus nippon) and report of tandem repeats in the control region. Molecular Phylogenetics and Evolution 12:47–56PubMedCrossRefGoogle Scholar
  5. Corbet, G. B. 1978. The mammals of the Palaearctic Region: A taxonomic view. British Museum, London, United KingdomGoogle Scholar
  6. Corbet, G. B., and J. E. Hill. 1991. A world list of mammalian species. Oxford University Press, Oxford, United KingdomGoogle Scholar
  7. Endo, A., and T. Doi. 1996. Home range of female sika deer Cervus nippon on Nozaki Island, the Goto Archipelago, Japan. Mammal Study 21:27–35CrossRefGoogle Scholar
  8. Endo, H. 1996. Scientific and Japanese names of Artiodactyls of Japan. Honyurui Kagaku (Mammalian Science) 35:203–209. (In Japanese with English abstract.)Google Scholar
  9. Excoffier, L., P. E. Smouse, and J. M. Quattro.1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131:479–491PubMedGoogle Scholar
  10. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–791CrossRefGoogle Scholar
  11. Hosoi, E., M. Yamada, H. Tado, and S. Ozawa. 2005. Geographic boundaries of the two distinct lineages of the sika deer, Cervus nippon, in Japan. The 9th international Mammalogical Congress, July-August, 2005, Sapporo, Hokkaido, JapanGoogle Scholar
  12. Igota, H., M. Sakuragi, H. Uno, K. Kaji, M. Kaneko, R. Akamatsu, and K. Maekawa. 2004. Seasonal migration patterns of female sika deer in eastern Hokkaido, Japan. Ecological Research 19:169–178CrossRefGoogle Scholar
  13. Imaizumi, Y. 1970. Description of a new species of Cervus from the Tsushima Island, Japan, with a revision of the subgenus sika based on clinal analysis. Bulletin of the National Science Museum, Tokyo 13:185–196Google Scholar
  14. Ito, T., and S. Takatsuki. 1987. Distribution and migration pattern of sika deer in Mt. Goyo. The Bulletin of Yamagata University11:411–430Google Scholar
  15. Kamei, S., Z. Kawamura, and H. Taruno. 1987. Mammals. Pages 86–89 in The Quantity Society of Japan, editor, Illustrated map of the quantity in Japan. Tokyo University Press, Tokyo, Japan. (In Japanese.)Google Scholar
  16. Kawamoto, Y. 2002. Population genetics on establishment of a species of Macaca fuscata. Asian Paleoprimatology 2:55–73Google Scholar
  17. Kawamoto, Y., T. Shotake, K. Nozawa, S. Kawamoto, K. Tomari, S. Kawai, K. Shirai, Y. Morimitsu, N. Takagi, H. Akaza, H. Fujii, K. Hagihara, K. Aizawa, S. Akachi, T. Oi, and S. Hayashi. 2007. Postglacial population expansion of Japanese macaques (Macaca fuscata) inferred from mitochondrial DNA phylogeography. Primates 48:27–40PubMedCrossRefGoogle Scholar
  18. Kawamura, Y. 1982. Biogeographical aspects of the Quaternary mammals of Japan. Honyurui Kagaku (Mammalian Science) 43–44:99–130. (In Japanese.)Google Scholar
  19. Kawamura, Y. 1991. Quaternary mammalian faunas in the Japanese islands. Quaternary Research 30:213–220Google Scholar
  20. Kawamura, Y., T. Kamei, and H. Taruno. 1989. Middle and Late Pleistocene mammalian faunas in Japan. Quaternary Research 28:317–326. (In Japanese with English abstract.)CrossRefGoogle Scholar
  21. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111–120PubMedCrossRefGoogle Scholar
  22. Kondo, N. 1982. Mammal fauna of Japan, with special reference to the ecological property of species, paleo-environment and the Tsugaru Strait. Honyurui Kagaku (Mammalian Science) 43–44:131–144. (In Japanese.)Google Scholar
  23. Loftus, R. T., D. E. MacHugh, D. G. Bradley, P. M. Sharp, and P. Cunningham. 1994. Evidence for two independent domestications of cattle. Proceedings of the National Academy of Sciences USA 91:2757–2761CrossRefGoogle Scholar
  24. Maruyama, N. 1981. A study about seasonal migration and gathering of sika deer, Cervus nippon TEMMINCK. Report of the Department of Agriculture, Tokyo University of Agriculture and Technology 23:85. (In Japanese with English summary.)Google Scholar
  25. Matsumoto, M., H. Nishinakagawa, and J. Otsuka. 1984. Morphometrical study on the skull of Cervus pulchellus, Cervus nippon mageshimae and Cervus nippon yakushimae. Journal of the Mammalogical Society of Japan 10:41–53. (In Japanese with English abstract.)Google Scholar
  26. Miura, S. 1974. Seasonal changes of sika deer habitats in Hinoebora, Tanzawa, Japan. Honyu Dobutugaku Zassi 6:51–66 (In Japanese)Google Scholar
  27. Nabata, D., R. Masuda, O. Takahashi, and J. Nagata. 2004. Bottleneck effects on the sika deer Cervus nippon population in Hokkaido, revealed by ancient DNA analysis. Zoological Science 21:473–481PubMedCrossRefGoogle Scholar
  28. Nagata, J., R. Masuda, and M. C. Yoshida. 1995. Nucleotide sequences of the cytochrome b and 12S rRNA genes in the Japanese sika deer Cervus nippon. Journal of the Mammalogical Society of Japan 20:1–8Google Scholar
  29. Nagata, J., R. Masuda, K. Kaji, M. Kaneko, and M. C. Yoshida. 1998. Genetic variation and population structure of Japanese sika deer (Cervus nippon) in Hokkaido Island, based on mitochon-drial D-loop sequences. Molecular Ecology7:871–877PubMedCrossRefGoogle Scholar
  30. Nagata, J., R. Masuda, H. B. Tamate, S. Hamasaki, K. Ochiai, M. Asada, S. Tatsuzawa, K. Suda, H. Tado, and M. C. Yoshida. 1999. Two genetically distinct lineages of the sika deer, Cervus nippon, in Japanese islands: Comparison of mitochondrial D-loop region sequences. Molecular Phylogenetics and Evolution 13:511–519PubMedCrossRefGoogle Scholar
  31. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, New York, USAGoogle Scholar
  32. Ohtaishi, N. 1986. Preliminary memorandum of classification, distribution and geographic variation on sika deer. Honyurui Kagaku (Mammalian Science) 53:13–17. (In Japanese.)Google Scholar
  33. Ohtaishi, N., and Y. T. Gao. 1990. A review of the distribution of all species of deer (Tragulidae, Moschidae and Cervidae) in China. Mammal Review 20:125–144CrossRefGoogle Scholar
  34. Okinawa Prefecture. 1996. A report of conservation and management of sika deer in Kerama Island. Board of Education, Okinawa Prefecture, Okinawa, Japan. (In Japanese.)Google Scholar
  35. Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406–425PubMedGoogle Scholar
  36. Takahashi, K., H. Matsuoka, H. Taru, K. Yasui, and Y. Hasegawa. 2003. Vertebrate fossils from the excavation site of the Naumann's elephant (Palaeoloxodon naumanni) at Sahama. Shizuoka Chigaku 87:15–21. (In Japanese.)Google Scholar
  37. Takatsuki, S. 1991. Feeding ecology of ungulates with reference to cervids. Pages 119–144 in Asahi M. and Kawamichi K., editors, Modern Mammalogy. Asakura Publishing, Tokyo, Japan. (In Japanese.)Google Scholar
  38. Takatsuki, S. 2000 Seasonal elevational movements of sika deer on Mt. Goyo, northern Japan. Mammal Study 25:107–114CrossRefGoogle Scholar
  39. Tamate, H. B., and T. Tsuchiya. 1995. Mitochondrial DNA polymorphism in subspecies of the Japanese sika deer, Cervus nippon. Journal of Heredity 86:211–215PubMedGoogle Scholar
  40. Tamate, H. B., S. Tatsuzawa, K. Suda, M. Izawa, T. Doi, K. Sunagawa, F. Miyahira, and H.Tado. 1998. Mitochondrial DNA variations in local populations of the Japanese sika deer, Cervus nippon. Journal of Mammalogy 78:1396–1403CrossRefGoogle Scholar
  41. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24:4876–4882CrossRefGoogle Scholar
  42. Tsukada, M. 1984. A vegetation map in the Japanese archipelago approximately 20,000 years B. P. Japanese Journal of Ecology 34:203–208. (In Japanese with English abstract.)Google Scholar
  43. Uno, H., and K. Kaji. 2000. Seasonal movements of female sika deer in eastern Hokkaido, Japan. Mammal Study 25:49–57CrossRefGoogle Scholar
  44. Yabe, T., T. Koizumi, A. Endo, S. Seki, and Y. Miura. 2001. Home range of sika deer in the central mountains in Kyushu. Kyushu Journal of Forest Research 54:131–132. (In Japanese.)Google Scholar
  45. Yamada, M., E. Hosoi, H. B. Tamate, J. Nagata, S. Tatsuzawa, H. Tado, and S. Ozawa. 2006. Distribution of two distinct lineages of sika deer (Cervus nippon) on Shikoku Island revealed by mitochondrial DNA analysis. Mammal Study 31:23–28CrossRefGoogle Scholar

Copyright information

© Springer 2009

Authors and Affiliations

  • Junco Nagata
    • 1
  1. 1.Forestry and Forest Products Research InstituteTsukubaJapan

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