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Development of rotavirus molecular epidemiology: electropherotyping

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Viral Gastroenteritis

Part of the book series: Archives of Virology ((ARCHIVES SUPPL,volume 12))

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Summary

Early in the era of rotavirology it was realized that the characteristic patterns of bands produced in polyacrylamide gels following electrophoresis of genomic dsRNA were useful for checking the identity of rotavirus isolates. However it was Romilio Espejo who first proposed the use of this technique for epidemiology, although most others did not take the suggestion seriously because the technique was then rather specialized and RNA staining methods were not very sensitive. Using samples collected by Ruth Bishop in Melbourne following the original identification of human rotaviruses, Sue Rodger recorded the “electropherotypes” of all samples available to 1979 and painstakingly compared them, side by side (since minor variations in conditions, especially temperature, alter the relative migration distances of dsRNA bands). These efforts produced the first longitudinal, extensive study of human rotavirus strain variation. Since then, technical improvements have greatly increased the sensitivity of the procedures, and electropherotyping has been recognized as a powerful and economical method for epidemiological studies of rotaviruses.

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References

  1. Buitenwerf J, Nuilwijk-van-Alphen M, Schapp GJ (1983) Characterization of rotaviral RNA isolated from children with gastroenteritis in two hospitals in Rotterdam. J Med Virol 12: 71–78

    Article  PubMed  CAS  Google Scholar 

  2. Eiden J, Vonderfecht S, Yolken RH (1985) Evidence that a novel rotavirus-like agent of rats can cause gastroenteritis in man. Lancet 2: 8–11

    Article  PubMed  CAS  Google Scholar 

  3. Espejo R, Romero P, Calderon E, Gonzalez N (1978) Diagnosis of rotavirus using viral RNA electrophoresis. Bol Med Hosp Infant Mex 35: 323–331

    PubMed  CAS  Google Scholar 

  4. Espejo RT, Calderon E, Gonzalez N (1977) Distinct reovirus-like agents associated with acute infantile gastroenteritis. J Clin Microbiol 6: 502–506

    PubMed  CAS  Google Scholar 

  5. Espejo RT, Calderon E, Gonzalez N, Salomon A, Martuscelli A, Romero P (1979) Presence of two distinct types of rotavirus in infant and young children hospitalized with acute gastroenteritis in Mexico City, 1977. J Infect Dis 139: 474–477

    Article  PubMed  CAS  Google Scholar 

  6. Espejo RT, Munoz O, Serafin F, Romero P (1980) Shift in the prevalent human rotavirus detected by ribonucleic acid segment differences. Infect Immun 27: 293–354

    Google Scholar 

  7. Espejo RT, Puerto F (1984) Shifts in the electrophoretic pattern on the RNA genome of rotaviruses under different electrophoretic conditions. J Virol Methods 8: 293–299

    Article  PubMed  CAS  Google Scholar 

  8. Estes MK, Graham DY, Dimitrov DH (1984) The molecular epidemiology of rotavirus gastroenteritis. Prog Med Virol 29: 1–22

    PubMed  CAS  Google Scholar 

  9. Hasegawa A, Inouye S, Matsuno S, Yamaoka K, Eko R, Suharyono W (1984) Isolation of human rotaviruses with a distinct RNA electrophoretic pattern from Indonesia. Microbiol Immunol 28: 719–722

    PubMed  CAS  Google Scholar 

  10. Herring AJ, Inglis NF, Ojeh CK, Snodgrass DR, Menzies JD (1982) Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels. J Clin Microbiol 16: 473–477

    PubMed  CAS  Google Scholar 

  11. Holmes IH (1985) Epidemiology of rotavirus infections based on analysis of genome RNA. In: Tzipori S (ed) Infectious Diarrhoea in the Young. Elsevier, Amsterdam, pp 195–200

    Google Scholar 

  12. Hung T, Chen GM, Wang CG, Yao HL, Fang ZY, Chao TX, Chou Zy, Ye W, Chang XJ, Den SS, Liong XQ, Chang WC (1984) Waterborne outbreak of rotavirus diarrhoea in adults in China caused by a novel rotavirus. Lancet 1: 1139–1142

    PubMed  CAS  Google Scholar 

  13. Kalica AR, Sereno MM, Wyatt RG, Mebus CA, Chanock RM, Kapikian AZ (1978) Comparison of human and animal rotavirus strains by gel electrophoresis of viral RNA. Virology 87: 247–255

    Article  PubMed  CAS  Google Scholar 

  14. Kasempimolporn S, Louisirirotchanakul S, Sinarachatanant P, Wasi C (1988) Polyacrylamide gel electrophoresis and silver staining for detection of rotavirus in stools from diarrheic patients in Thailand. J Clin Microbiol 26: 158–160

    PubMed  CAS  Google Scholar 

  15. Konno T, Sato T, Suzuki H, Kitaoka S, Katsushima N, Sakamoto M, Yazaki N, Ishida N (1984) Changing RNA patterns in rotaviruses of human origin: demonstration of a single dominant pattern at the start of an epidemic and various patterns thereafter. J Infect Dis 149: 683–687

    Article  PubMed  CAS  Google Scholar 

  16. Lourenco MH, Nicolas JC, Cohen J, Scherrer R, Bricout F (1981) Study of human rotavirus genome by electrophoresis: attempt of classification among strains isolated in France. Ann Virol Inst Pasteur 132E: 161–173

    Article  Google Scholar 

  17. Matsuno S, Hasegawa A, Mukoyama A, Inouye S (1985) A candidate for a new serotype of human rotavirus. J Virol 54: 623–624

    PubMed  CAS  Google Scholar 

  18. McNulty MS, Todd D, Allan GM, McFerran JB, Greene JA (1984) Epidemiology of rotavirus infection in broiler chickens: recognition of four serogroups. Arch Virol 81: 113–121

    Article  PubMed  CAS  Google Scholar 

  19. Nakagomi T, Akatani K, Ikegami N, Katsushima N, Nakagomi O (1988) Occurrence of changes in human rotavirus serotypes with concurrent changes in genomic RNA electropherotypes. J Clin Microbiol 26: 2586–2592

    PubMed  CAS  Google Scholar 

  20. Nicolas JC, Pothier P, Cohen J, Lourenco MH, Thompson R, Guimbaud P, Chenon A, Dauvergne M, Bricout F (1984) Survey of human rotavirus propagation as studied by electrophoresis of genomic RNA. J Infect Dis 149: 688–693

    Article  PubMed  CAS  Google Scholar 

  21. Nuttall SD, Hum CP, Holmes IH, Dyall-Smith ML (1989) Sequences of VP9 genes from short and supershort rotavirus strains. Virology 171: 453–457

    Article  PubMed  CAS  Google Scholar 

  22. Pereira HG, Azeredo RS, Leite JP, Barth OM, Sutmoller F, de-Farias V, Vidal MN (1983) Comparison of polyacrylamide gel electrophoresis (PAGE), immuno-electron microscopy (IEM) and enzyme immunoassay (EIA) for the rapid diagnosis of rotavirus infection in children. Mem Inst Oswaldo Cruz 78: 483–490

    Article  PubMed  CAS  Google Scholar 

  23. Pereira HG, Leite JP, Azeredo RS, de-Faria V, Sutmoller F (1983) An atypical rotavirus detected in a child with gastroenteritis in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz 78: 245–250

    PubMed  CAS  Google Scholar 

  24. Rodger SM, Bishop RF, Birch C, McLean B, Holmes IH (1981) Molecular epidemiology of human rotaviruses in Melbourne, Australia, from 1973 to 1979, as determined by electrophoresis of genome ribonucleic acid. J. Clin Microbiol 13: 272–278

    PubMed  CAS  Google Scholar 

  25. Rodger SM, Bishop RF, Holmes IH (1982) Detection of a rota virus-like agent associated with diarrhea in an infant. J Clin Microbiol 16: 724–726

    PubMed  CAS  Google Scholar 

  26. Rodger SM, Holmes IH (1979) Comparison of the genomes of simian, bovine, and human rotaviruses by gel electrophoresis and detection of genomic variation among bovine isolates. J Virol 30: 839–846

    PubMed  CAS  Google Scholar 

  27. Rodriguez WJ, Kim HW, Brandt CD, Gradner MK, Parrott RH (1983) Use of electrophoresis of RNA from human rotavirus to establish the identity of strains involved in outbreaks in a tertiary care nursery. J Infect Dis 148: 34–40

    Article  PubMed  CAS  Google Scholar 

  28. Shinozaki T, Ushijima H, Tajima T, Kim B, Araki K, Fujii R (1985) Evaluation of four tests for detecting human rotavirus in feces [letter]. Eur J Pediatr 143: 238

    Article  PubMed  CAS  Google Scholar 

  29. Spencer EG, Avendano LF, Garcia BI (1983) Analysis of human rotavirus mixed electropherotypes. Infect Immun 39: 569–574

    PubMed  CAS  Google Scholar 

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© 1996 Springer-Verlag Wien

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Holmes, I.H. (1996). Development of rotavirus molecular epidemiology: electropherotyping. In: Chiba, S., Estes, M.K., Nakata, S., Calisher, C.H. (eds) Viral Gastroenteritis. Archives of Virology, vol 12. Springer, Vienna. https://doi.org/10.1007/978-3-7091-6553-9_10

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  • DOI: https://doi.org/10.1007/978-3-7091-6553-9_10

  • Publisher Name: Springer, Vienna

  • Print ISBN: 978-3-211-82875-5

  • Online ISBN: 978-3-7091-6553-9

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