Skip to main content

Modern Human Migrations: The First 200,000 Years

  • Chapter
  • First Online:
Migrations: Interdisciplinary Perspectives
  • 3074 Accesses

Abstract

In a way, the DNA sequences contained within each of our cells can be thought of as the text in microscopic book. This text is amazingly long, approximately one million pages if 6,000 letters fit on both sides of a page. This DNA contains the codes used to build RNA and proteins, which in turn assemble all the tissues in our bodies and direct the chemical reactions of life. We inherit copies of this DNA genome book from our parents and pass on copies to our children. However, in each generation, small changes are made, approximately 175 letters out of the genome, which are also passed on to our descendants. We can infer how closely people are related by comparing these types of inherited changes, which are shared between individuals or groups of individuals. Most of these changes are of no functional consequence, such as using either American or British spelling for color/colour; the meaning is still the same. However, occasionally, there is a functional change that can result in a phenotypic difference among individuals.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    Two lineages from this ancestor give a total of 40,000 generations between modern individuals, multiplying this by the per generation mutation rate, 2.5 × 10−8 (Nachman and Crowell 2000), gives 1 × 10−3 or one out of a thousand differences.

  2. 2.

    This greater amount of variation implies that chimpanzees and other great apes have had a larger average population size over time than humans. Humans lost genetic diversity due to population bottlenecks and/or the extinctions of genetically distinctive human populations such as the Neanderthals.

  3. 3.

    In populations that are separated to some degree, alleles may be at different frequencies. Say we have allele A and a at one gene and allele B and b at another gene. If A and B are at high frequency in one population and a and b are at a high frequency in another population, in a sample of individuals from both populations, A appears more often than expected with B and likewise for a and b. Few individuals contain A and b or a and B. This is a signal that the sampled individuals originate from more than one structured population.

  4. 4.

    Principal component analysis is a statistical method used to summarize aspects of complex datasets. In an imperfect analogy, imagine viewing a city from directly above. The positions of the buildings can be seen but not the heights of the buildings. Now, imagine the skyline of a city when viewed from the east. The heights of many of the larger buildings can be measured but not their precise positions. These two views represent simplified aspects of a complex object. Combining the two views allows a more complete overall picture to emerge, but many details are still missing.

References

  • Adeyemo AA, Chen G, Chen Y, Rotimi C (2005) Genetic structure in four West African population groups. BMC Genet 6:38

    Article  Google Scholar 

  • Barbujani G, Magagni A, Minch E, Cavalli-Sforza LL (1997) An apportionment of human DNA diversity. Proc Natl Acad Sci USA 94:4516–4519

    Article  Google Scholar 

  • Bellwood P (2000) The time depth of major language families: an archaeologist’s perspective. In: Renfew C, McMahon A, Trask L 1 (eds) Time depth in historical linguistics. McDonald Institute for Archaeological Research, Cambridge, pp 109–140

    Google Scholar 

  • Bersaglieri T, Sabeti PC, Patterson N, Vanderploeg T, Schaffner SF, Drake JA, Rhodes M, Reich DE, Hirschhorn JN (2004) Genetic signatures of strong recent positive selection at the lactase gene. Am J Hum Genet 74:1111–1120

    Article  Google Scholar 

  • Chen FC, Li WH (2001) Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am J Hum Genet 68:444–456

    Article  Google Scholar 

  • Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK (2006) A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet 38:1251–1260

    Article  Google Scholar 

  • Coop G, Pickrell JK, Novembre J, Kudaravalli S, Li J, Absher D, Myers RM, Cavalli-Sforza LL, Feldman MW, Pritchard JK (2009) The role of geography in human adaptation. PLoS Genet 5:e1000500

    Article  Google Scholar 

  • Flatz G, Rotthauwe HW (1973) Lactose nutrition and natural selection. Lancet 302:76–77

    Article  Google Scholar 

  • Foster MW, Sharp RR (2002) Race, ethnicity, and genomics: social classifications as proxies of biological heterogeneity. Genome Res 12:844–850

    Article  Google Scholar 

  • Friedlaender JS, Friedlaender FR, Reed FA, Kidd KK, Kidd JR, Chambers GK, Lea RA, Loo JH, Koki G, Hodgson JA, Merriwether DA, Weber JL (2008) The genetic structure of Pacific Islanders. PLoS Genet 4:e19

    Article  Google Scholar 

  • Gagneux P, Wills C, Gerioff U, Tautz D, Morin PA, Boesch C, Fruth B, Hohmann G, Ryder OA, Woodruff DS (1999) Mitochondrial sequences show diverse evolutionary histories of African hominids. Proc Natl Acad Sci USA 96:5077–5082

    Article  Google Scholar 

  • Garrigan D, Mobasher Z, Kingman SB, Wilder JA, Hammer MF (2005) Deep haplotype divergence and long-range linkage disequilibrium at Xp21.1 provide evidence that humans descended from a structured ancestral population. Genetics 170:1849–1856

    Article  Google Scholar 

  • Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MHZ et al (2010) A draft sequence of the Neandertal genome. Science 328:710–722

    Article  Google Scholar 

  • Hamblin MT, Di Rienzo A (2000) Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. Am J Hum Genet 66:1669–1679

    Article  Google Scholar 

  • Heath SC, Gut IG, Brennan P, McKay JD, Bencko V, Fabianova E, Foretova L, Georges M, Janout V, Kabesch M et al (2008) Investigation of the fine structure of European populations with applications to disease association studies. Eur J Hum Genet 16:1413–1429

    Article  Google Scholar 

  • Kaessmann H, Wiebe V, Weiss G, Pääbo S (2001) Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nat Genet 27:155–156

    Article  Google Scholar 

  • Kalinowski ST (2010) The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure. Heredity 106:625–632

    Article  Google Scholar 

  • Lao O, Lu TT, Nothnagel M, Junge O, Freitag-Wolf S, Caliebe A, Balascakova M, Bertranpetit J, Bindoff LA, Comas D et al (2008) Correlation between genetic and geographic structure in Europe. Curr Biol 18:1241–1248

    Article  Google Scholar 

  • Li WH, Sadler LA (1991) Low nucleotide diversity in man. Genetics 129:513–523

    Google Scholar 

  • Menozzi P, Piazza A, Cavalli-Sforza L (1978) Synthetic maps of human gene frequencies in Europeans. Science 201:786–792

    Article  Google Scholar 

  • Nachman MW, Crowell SL (2000) Estimation of the mutation rate per nucleotide in humans. Genetics 156:297–304

    Google Scholar 

  • Novembre J, Stephens M (2008) Interpreting principal component analyses of spatial population genetic variation. Nat Genet 40:646–649

    Article  Google Scholar 

  • Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergmann S, Nelson MR, Stephens M, Bustamante CD (2008) Genes mirror geography within Europe. Nature 456:98–101

    Article  Google Scholar 

  • Parra EJ (2007) Human pigmentation variation: evolution, genetic basis, and implications for public health. Yearb Phys Anthropol 50:85–105

    Article  Google Scholar 

  • Patterson N, Price AL, Reich D (2006) Population structure and eigenanalysis. PLoS Genet 2:e190

    Article  Google Scholar 

  • Piazza A, Rendine S, Minch E, Menozzi P, Mountain J, Cavalli-Sforza LL (1995) Genetics and the origin of European languages. Proc Natl Acad Sci USA 92:5836–5840

    Article  Google Scholar 

  • Plagnol V, Wall JD (2006) Possible ancestral structure in human populations. PLoS Genet 2:e105

    Article  Google Scholar 

  • Price AL, Helgason A, Palsson S, Stefansson H, St Clair D, Andreassen OA, Reich D, Kong A, Stefansson K (2009) The impact of divergence time on the nature of population structure: an example from Iceland. PLoS Genet 5:e1000505

    Article  Google Scholar 

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

    Google Scholar 

  • Reed FA, Tishkoff SA (2006) African human diversity, origins and migrations. Curr Opin Genet Dev 16:597–605

    Article  Google Scholar 

  • Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW (2002) Genetic structure of human populations. Science 298:2381–2385

    Article  Google Scholar 

  • Shriver MD, Smith MW, Jin L, Marcini A, Akey JM, Deka R, Ferrell RE (1997) Ethnic-affiliation estimation by use of population-specific DNA markers. Am J Hum Genet 60:957–964

    Google Scholar 

  • Sokal RR, Harding RM, Oden NL (1989) Spatial patterns of human gene frequencies in Europe. Am J Phys Anthropol 80:267–294

    Article  Google Scholar 

  • Tang H, Choudhry S, Mei R, Morgan M, Rodriguez-Cintron W, Burchard EG, Risch NJ (2007) Recent genetic selection in the ancestral admixture of Puerto Ricans. Am J Hum Genet 81:626–633

    Article  Google Scholar 

  • The 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature 467:1061–1073

    Article  Google Scholar 

  • Tian C, Plenge RM, Ransom M, Lee A, Villoslada P, Selmi C, Klareskog L, Pulver AE, Qi L, Gregersen PK, Seldin MF (2008) Analysis and application of European genetic substructure using 300 K SNP information. PLoS Genet 4:e4

    Article  Google Scholar 

  • Tishkoff SA, Reed FA, Ranciaro A, Voight BF, Babbitt CC, Silverman JS, Powell K, Mortensen HM, Hirbo JB, Osman M et al (2007) Convergent adaptation of human lactase persistence in Africa and Europe. Nat Genet 39:31–40

    Article  Google Scholar 

  • Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, Froment A, Hirbo JB, Awomoyi AA, Bodo JM, Doumbo O et al (2009) The genetic structure and history of Africans and African Americans. Science 324:1035–1044

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Floyd A. Reed Ph.D .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer-Verlag Wien

About this chapter

Cite this chapter

Reed, F.A. (2012). Modern Human Migrations: The First 200,000 Years. In: Messer, M., Schroeder, R., Wodak, R. (eds) Migrations: Interdisciplinary Perspectives. Springer, Vienna. https://doi.org/10.1007/978-3-7091-0950-2_29

Download citation

Publish with us

Policies and ethics