Abstract
The cultivated tomato, Solanum lycopersicum L., is a member of the small section Lycopersicon along with its 12 wild relatives. An additional four species from sections Juglandifolia and Lycopersicoides are traditionally considered as tomato wild relatives. These species are all endemic to South America, but the cultivated tomato itself has achieved worldwide distribution with the help of human populations. Tomato and its wild relatives are part of a larger monophyletic group (the Potato clade) that also contains the potatoes and their wild relatives. Here we review the taxonomic and phylogenetic history, relationships and species-level taxonomy of the cultivated tomato and its wild relatives, and highlight important studies of diversity that remain to be undertaken in the group, especially in light of global environmental and climatic change.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Alvarez AE, van de Wiel CCM, Smulders MJM, Vosman B (2001) Use of microsatellites to evaluate genetic diversity and species relationships in the genus Lycopersicon. Theor Appl Genet 103:1283–1292
APG III (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161:105–121
Asprelli PD, Sance M, Insani M, Asis R, Valle EM, Carrari F, Galmarini CR, Peralta IE (2016) Agronomic performance and fruit nutritional quality of an Andean tomato collection. Acta Horticulturae (in press)
Barboza GE, Knapp S, Särkinen TE (2013) Grupo VII. Moreloide. In: Anton AM, Zuloaga FO (eds), Barboza GE (coord) Flora Argentina vol 13, Solanaceae. IOBDA- IMBIV, CONICET, Buenos Aires, pp 231–264
Baum DA, Smith SD (2012) Tree thinking: an introduction to phylogenetic biology. Roberts and Co., Greenwood
Bell CD, Soltis DE, Soltis PS (2010) The age and diversification of the angiosperms re-visited. Am J Bot 97:1296–1303
Bentham G, Hooker JD (1873) Solanaceae. Genera Plant 2:882–913
Besler B (1613) Hortus eystettensis. Published by the author, Nuremberg
Blanca J, Cañizares J, Cordero L, Pascual L, Diez MJ, Nuez F (2013) Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato. PLoS ONE 7(10):e48198
Bohs L (1995) Transfer of Cyphomandra (Solanaceae) and its species to Solanum. Taxon 44:583–587
Bohs L (2005) Major clades in Solanum based on ndhF sequences. In: Keating RC, Hollowell VC, Croat TB (eds) A Festschrift for William G. D’Arcy: the legacy of a taxonomist. Monographs in Systematic Botany from the Missouri Botanical Garden, vol 104. Missouri Botanical Garden Press, St. Louis, pp 27–49
Bohs L, Olmstead RG (1997) Phylogenetic relationships in Solanum (Solanaceae) based on ndhF sequences. Syst Bot 22:5–17
Bohs L, Olmstead RG (1999) Solanum phylogeny inferred from chloroplast DNA sequence data. In: Nee M, Symon DE, Lester RN, Jessop JP (eds) Solanaceae IV: advances in biology and utilization. Royal Botanic Gardens, Kew, pp 97–110
Bohs L, Olmstead RG (2001) A reassessment of Normania and Triguera (Solanaceae). Plant Syst Evol 228:33–48
Bretó MP, Asins MJ, Carbonell EA (1993) Genetic variability in Lycopersicon species and their genetic relationships. Theor Appl Genet 86:113–120
Brickell CD, Alexander C, David JC, Hetterscheid WLA, Leslie AC, Malecot V, Jin XB, Cubey JJ (2009) International code of nomenclature for cultivated plants (ICNCP or Cultivated Plant Code) incorporating the rules and recommendations for naming plants in cultivation, 8th edn. Adopted by the International Union of Biological Sciences International Commission for the Nomenclature of Cultivated Plants. Regnum Vegetabile 151; Scripta Horticulturae 10. International Society for Horticultural Science, Leuven, Belgium
Caicedo AL, Schaal BA (2004) Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene. Mol Ecol 13:1871–1882
Canady MA, Ji Y, Chetelat RT (2006) Homeologous recombination in Solanum lycopersicodes introgression lines of cultivated tomato. Genetics 174:1775–1778
Causse M, Desplat N, Pascual L, Le Paslier M-C, Sauvage C, Bauchet G, Bérard A, Bounon R, Tchoumakov M, Brunel D, Bouchet J-P (2013) Whole genome resequencing in tomato reveals variation associated with introgression and breeding events. BMC Genom 14:791
Chetelat RT, Ji Y (2007) Cytogenetics and evolution. In: Razdan MK, Mattoo AK (eds) Genetic improvement of solanaceous crops, vol 2, Tomato. Science, Enfield, pp 77–112
Chetelat RT, Meglic Y (2000) Molecular mapping of chromosome segments introgressed from Solanum lycopersicoides into cultivated tomato (Lycopersicon esculentum). Theor Appl Genet 100:232–241
Chetelat RT, Rick CM, Cisneros P, Alpert KB, DeVerna JW (1998) Identification, transmission, and cytological behavior of Solanum lycopersicoides Dun. monosomic alien addition lines in tomato (Lycopersicon esculentum Mill.). Genome 41:40–50
Child A (1990) A synopsis of Solanum subgenus Potatoe (G. Don) D’Arcy section Tuberarium (Dunal) Bitter (s.l.). Feddes Rep 101:209–235
Clausen AM, Ferrer ME, Formica ME (2008) Situación de los recursos Fitogenéticos en la Argentina. II Informe Nacional 1996–2006. Publicaciones Regionales. Ediciones INTA
Correll DS (1958) A new species and some nomenclatural changes in Solanum section Tuberarium. Madroño 14:232–236
Correll DS (1962) The potato and its wild relatives. Contr Texas Res Found Bot Studies 4:1–606
Cortina PR, Asis R, Peralta IE, Asprelli PD, Santiago AN (2016) Determination of volatile organic compounds in Andean tomato landraces by headspace solid phase microextraction-gas chromatography-mass spectrometry. J Braz Chem Soc 1–12. http://jbcs.sbq.org.br/imagebank/pdf/160126AR.pdf
D’Arcy WG (1972) Solanaceae studies II: typification of subdivisions of Solanum. Ann Mo Bot Gard 59:262–278
D’Arcy WG (1987) The circumscription of Lycopersicon. Solanaceae Newsl 2:60–61
D’Arcy WG (1991) The Solanaceae since 1976, with a review of its biogeography. In: Hawkes JG, Lester RN, Nee M, Estrada N (eds) Solanaceae III: taxonomy, chemistry, evolution. Royal Botanic Gardens, Kew, pp 75–137
Darwin SC, Knapp S, Peralta IE (2003) Taxonomy of tomatoes in the Galapagos Islands: native and introduced species of Solanum section Lycopersicon (Solanaceae). Syst Biodivers 12:29–53
Davis J, Yu D, Evans W, Gokirmak T, Chetelat RT, Stotz HU (2009) Mapping of loci from Solanum lycopersicoides conferring resistance or susceptibility to Botrytis cinerea in tomato. Theor Appl Genet 119:305–314
de Candolle ALPP (1886) Origin of cultivated plants, 2nd ed. D. Appleton, New York (1959 reprint; Hafner Publishing Company, New York)
de Tournefort JP (1694) Éléments de Botanique. Imprimerie Royale, Paris
Di Paola Naranjo RD, Otaiza S, Saragusti A2, Baroni V, Carranza Adel V, Peralta IE, Valle EM, Carrari F, Asis R (2016a) Hydrophilic antioxidants from Andean tomato landraces assessed by their bioactivities in vitro and in vivo. Food Chem 206:146–155. doi:10.1016/j.foodchem.2016.03.027
Di Paola Naranjo RD, Otaiza S, Saragusti AC, Baroni V, Carranza AV, Peralta IE, Valle EM, Carrari F, Asis R (2016b) Data on polyphenols and biological activity analyses of an Andean tomato collection and their relationships with tomato traits and geographical origin. Data Brief 7:1258–1268. doi:10.1016/j.dib.2016.04.005
Dunal MF (1813) Histoire naturelle, médicale et économique des Solanum et des genres qui ont été confundus avec eux. France, Montpellier
Dunal MF (1852) Solanaceae. In: De Candolle AP (ed) Prodromus systematis naturalis regni vegetabilis, vol 13, pp 1–450
Fosberg FR (1987) New nomenclatural combinations for Galápagos plant species. Phytologia 62:181–183
Fridman E, Carrari F, Liu YS, Fernie AR, Zamir D (2004) Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science 305:1786–1789
Frodin D (2004) History and concepts of big plant genera. Taxon 53:753–776
Grandillo S, Chetelat R, Knapp S, Spooner D, Peralta, I, Cammareri M, Perez O, Tripodi P, Termolino P, Chuisano ML, Ercolano MR, Frusciante L, Monti L, Pignone D (2011) 9. Solanum sect. Lycopersicon. In: Kole C (ed) Wild crop relatives: genomics and breeding resources. Volume 5—vegetables. Springer, Heidelberg, pp 129–216
Gonzáles J et al (2011) Catálogo de poblaciones de tomate nativo e introducido en Bolivia. Impresiones Poligraf, Bolivia
Hawkes JG (1990) The potato: evolution biodiversity and genetic resources. Belhaven, London
Heine H (1976) Flora de la Nouvelle Caledonie, vol 7. Museum National D’Histoire Naturelle, Paris
Huamán Z, Spooner DM (2002) Reclassification of landrace populations of cultivated potatoes (Solanum sect. Petota). Am J Bot 89:947–965
Hunziker AT (1979) South American Solanaceae: a synoptic survey. In: Hawkes JG, Lester RN, Skelding AD (eds) The biology and taxonomy of Solanaceae. Academic, London, pp 49–85
Hunziker AT (2001) Genera Solanacearum, the genera of Solanaceae illustrated arranged according to a new system. ARG Gantner, Ruggell
Jenkins JA (1948) The origin of the cultivated tomato. Econ Bot 2:379–392
Jussieu AL (1789) Genera plantarum. Herissant V & Barrios T, Paris
Knapp S (2002) Solanum section Geminata. Fl Neotrop 84:1–405
Knapp S, Bohs L, Nee M, Spooner DM (2004) Solanaceae: a model for linking genomics and biodiversity. Comp Funct Genom 5:285–291
Koenig D, Jimenez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Kumar Devisetty U, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, Xiong G, Taylor-Teeples, M, Brady SM, Pauly M, Weigel D, Usadel B, Fernie AR, Peng J, Sinha N, Maloof JN (2013) Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci USA 110(28):E2655–E2662. doi:10.1073/pnas.1309606110
Linnaeus C (1753) Species plantarum, 1st edn. L. Salvius, Stockholm
Lippman Z, Tanksley SD (2001) Dissecting the genetic pathway to extreme fruit size in tomato using a cross between the small-fruited wild species Lycopersicon pimpinellifolium and L. esculentum var. Giant Heirloom. Genetics 158:413–422
Lucatti AF, van Heusden AW, de Vos RCH, Visser RGF, Vosman B (2013) Differences in insect resistance between tomato species endemic to the Galapagos islands. BMC Evol Biol 13:175
Luckwill LC (1943) The genus Lycopersicon: an historical, biological, and taxonomical survey of the wild and cultivated tomatoes. Aberdeen Univ Stud 120:1–44
Macbride JF (1962) Solanaceae. In: Flora of Peru. Field Mus Nat Hist Bot Ser 13:3–267
Mann CC (2011) 1493: Uncovering the New World Columbus created. Alfred A. Knopf, New York
Marshall JA, Knapp S, Davey MR, Power JB, Cocking EC, Bennett MD, Cox AV (2001) Molecular systematics of Solanum section Lycopersicum (Lycopersicon) using the nuclear ITS rDNA region. Theor Appl Genet 103:1216–1222
Mattioli PA (1544) Di Pedacio Dioscoride Anazarbeo libri cinque della historia, et materia medicinale trodotti in lingua uolgare Italiana. N. de Bascarini, Venice
Mattioli PA (1590) Kreutterbuch deß hochgelehrten unnd weitberühmten Herrn D. Petri Andreae Matthioli. Johann Feyerabend für Peter Fischer & Heinrich Tack, Frankfurt
McClean PE, Hanson MR (1986) Mitochondrial DNA sequence divergence among Lycopersicon and related Solanum species. Genetics 112:649–667
McNeill J, Barrie FR, Buck WR, Demoulin V, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Marhold K, Prado J, Prud’homme van Reine WF, Smith GF, Wiersema JH, Turland NJ (2012) International Code of Nomenclature for algae, fungi, and plants (Melbourne Code). Regnum Vegetabile 154. Koelz Scientific Books, Königstein, Germany
Miller P (1731) The Gardener’s dictionary, 1st edn. Published for the author, London
Miller P (1754) The Gardener’s dictionary, Abridged 4th edn. Published for the author, London
Miller P. (1807) The gardener’s and botanist’s dictionary, posthumous edition, ed. Thomas Martyn. F.C. & J. Rivington, London
Miller JC, Tanksley SD (1990) RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theor Appl Genet 80:437–448
Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C, Ling H, Xue Y, Seymour G, Bishop G, Bryan G, Sharma R, Khurana J, Tyagi A, Chattopadhyay D, Singh NK, Stiekema W, Lindhout P, Jesse T, Lankhorst RK, Bouzayen M, Shibata D, Tabata S, Granell A, Botella MA, Giuliano G, Frusciante L, Causse M, Zamir D (2005) The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comp Funct Genom 6(3):153–158
Müller CH (1940) A revision of the genus Lycopersicon. USDA Misc Publ 382:1–28
Nee M (1999) A synopsis of Solanum in the New World. In: Nee M, Symon DE, Lester RN, Jessop JP (eds) Solanaceae IV: advances in biology and utilization. Royal Botanic Gardens, Kew, pp 285–333
Nesbitt TC, Tanksley SD (2002) Comparative sequencing in the genus Lycopersicon: implications for the evolution of fruit size in the domestication of cultivated tomatoes. Genetics 162:365–379
Olmstead RG, Palmer JD (1997) Implications for phylogeny, classification, and biogeography of Solanum from cpDNA restriction site variation. Syst Bot 22:19–29
Olmstead RG, Sweere JA, Spangler RE, Bohs L, Palmer JD (1999) Phylogeny and provisional classification of the Solanaceae based on chloroplast DNA. In: Nee M, Symon DE, Lester RN, Jessop JP (eds) Solanaceae IV: advances in biology and utilization. Royal Botanic Gardens, Kew, pp 111–137
Palmer JD, Zamir D (1982) Chloroplast DNA evolution and phylogenetic relationships in Lycopersicon. Proc Natl Acad Sci USA 79:5006–5010
Peralta IE, Spooner DM (2001) Granule-Bound Starch Synthase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. section Lycopersicon [Mill.] Wettst. subsection Lycopersicon). Am J Bot 88:1888–1902
Peralta IE, Spooner DM (2005) Morphological characterization and Relationships of wild tomatoes (Solanum L. Section Lycopersicon [Mill.] Wettst. Subsection Lycopersicon). Monogr Syst Bot Mo Bot Gard 104:227–257
Peralta IE, Spooner DM (2007) History, origin and early cultivation of tomato (Solanaceae). In: Razdan MK, Mattoo AK (eds) Genetic improvement of Solanaceous crops, vol 2, tomato. Science, Enfield, pp 1–27
Peralta IE, Knapp S, Spooner DM (2005) New species of wild tomatoes (Solanum section Lycopersicon: Solanaceae) from Northern Peru. Syst Bot 30(2):424–434
Peralta IE, Knapp S, Spooner DM (2006) Nomenclature for wild and cultivated tomatoes. Feature article. Rep Tomato Genet Coop 56:6–12
Peralta IE, Spooner DM, Knapp S (2008a) Taxonomy of wild tomatoes and their relatives (Solanum sections Lycopersicoides, Juglandifolia, Lycopersicon; Solanaceae). Syst Bot Monogr 84:1–186
Peralta IE, Makuch M, García Lampasona S, Occhiuto PN, Asprelli PD, Lorello IM, Togno L (2008b) Catálogo de poblaciones criollas de pimiento, tomate y zapallo colectadas en valles andinos de la Argentina. Editorial INTA, Mendoza
Pertuzé RA, Ji Y, Chetelat RT (2002) Comparative linkage map of the Solanum lycopersicoides and S. sitiens genomes and their differentiation from tomato. Genome 45:1003–1012
Quadrana L, Almeida J, Asís R, Duffy T, Dominguez PG, Bermúdez L, ContiG, Corrêa da Silva JV, Colot V, Asurmendi S, Fernie AR, Rossi M, Peralta I, Carrari F (2014) Natural occurring epialleles determine vitamin E accumulation in tomato fruits. Nat Comm 5:4027. doi:10.1038/ncomms5027
Ranc N, Muños S, Santoni S, Causse M (2008) A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (Solanaceae). BMC Plant Biol 8:130
Rick CM (1979) Biosystematic studies in Lycopersicon and closely related species of Solanum. In: Hawkes JG, Lester RN, Skelding AD (eds) The biology and taxonomy of Solanaceae, Linn Soc Symp Ser 7. Academic, New York, pp 667–677
Rick CM (1988) Tomato-like nightshades: affinities, autoecology, and breeders opportunities. Econ Bot 42:145–154
Rick CM, Chetelat RT (1995) Utilization of related wild species for tomato improvement. Acta Hortic 412:21–38
Rick CM, Holle M (1990) Andean Lycopersicon esculentum var cerasiforme genetic variation and its evolutionary significance. Econ Bot 43(Suppl. 3):69–78
Rick CM, Laterrot H, Philouze J (1990) A revised key for the Lycopersicon species. Tomato Genet Coop Rep 40:31
Rodriguez F, Wu F, Ané C, Tanksley S, Spooner DM (2010) Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history? BMC Evol Biol 9:191
Ross RJ (1998) Review paper: global genetic resources of vegetables. Plant Var Seeds 11:39–60
Särkinen T, Bohs L, Olmstead RG, Knapp S (2013) A phylogenetic framework for the evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree. BMC Evol Biol 13:214
Schauer N, Semel Y, Roessner U, Gur A, Balbo I, Carrari F, Pleban T, Perez-Melis A, Bruedigam C, Kopka J, Willmitzer L, Zamir D, Fernie AR (2006) Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol 24:447–454
Seithe A (1962) Die Haararten der Gattung Solanum L. und ihre taxonomische Verwertung. Bot Jahrb Syst 81:261–336
Seymour G, Ostergaard L, Chapman NH, Knapp S, Martin C (2013) Fruit ripening and development. Ann Rev Plant Biol 64:219–241
Smith SD, Peralta IE (2002) Ecogeographic surveys as tools for analyzing potential reproductive isolating mechanisms: an example using Solanum juglandifolium Dunal, S. ochranthum Dunal, S. lycopersicoides Dunal, and S. sitiens I.M. Johnston. Taxon 51:341–349
Spooner DM, Anderson GJ, Jansen RK (1993) Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). Am J Bot 80:676–688
Spooner DM, Peralta IE, Knapp S (2005) Comparison of AFLPs to other markers for phylogenetic inference in wild tomatoes [Solanum L. section Lycopersicon (Mill.) Wettst. subsection Lycopersicon]. Taxon 54:43–61
Stack SM, Covey PA, Anderson LK, Bedinger PA (2009) Cytogenetic characterization of species hybrids in the tomato clade. Tomato Genet Coop Rep 59:57–61
Stommel JR (2001) USDA 97L63, 97L66 and 97L97: tomato breeding lines with high fruit beta-carotene content. HortScience 36:387–388
Symon DE (1981) The Solanaceous genera Browallia, Capsicum, Cestrum, Cyphomandra, Hyoscyamus, Lycopersicon, Nierembergia, Physalis, Petunia, Salpichroa, Withania, naturalized in Australia. J Adelaide Bot Gard 3:133–166
Symon DE (1985) The Solanaceae of New Guinea. J Adelaide Bot Gard 8:1–177
Taylor IB (1986) Biosystematics of the tomato. In: Atherton JG, Rudich J (eds) The tomato crop: a scientific basis for improvement. Chapman and Hall, London, pp 1–34
Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635–641
Van der Knaap E, Lippman ZB, Tanksley SD (2002) Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions. Theor Appl Genet 104:241–247
Villand J, Skroch PW, Lai T, Hanson P, Kuo CG, Nienhuis J (1998) Genetic variation among tomato accessions from primary and secondary centers of diversity. Crop Sci 38:1339–1347
Whalen MD (1979) Taxonomy of Solanum section Androceras. Gentes Herb 11:359–426
Williams CE, St. Clair DA (1993) Phenetic relationships and levels of variability detected by restriction fragment length polymorphism and random amplified polymorphic DNA analysis of cultivated and wild accessions of Lycopersicum esculentum. Genome 36:619–630
Wu F, Mueller LA, Crouzillat D, Petiard V, Tanksley SD (2006) Combining bioinformatics and phylogenetics to identify large sets of single copy, orthologous genes (COSII) for comparative, evolutionary and systematics studies: a test case in the Euasterid plant clade. Genetics 174:1407–1420
Acknowledgments
We thank Mathilde Causse for asking us to write this chapter, and all our solanaceous colleagues for years of fruitful research together, especially David M. Spooner and Lynn Bohs. SK thanks the National Science Foundation (USA) for funding under the Planetary Biodiversity Inventory programme (PBI Solanum: a worldwide treatment, DEB-0316614), the European Commission for funding under the FP6 Integrated Project EU-SOL (PL 016214) and SYNTHESYS programme (http://www.synthesys.info/ which is financed by European Community Research Infrastructure Action under the FP6 “Structuring the European Research Area” Programme); IE thanks María Sance, Pablo Asprelli, Marilu Makuch, Leonardo Togno, Inés Lorello, Patricia Occhiuto, Estela Valle, Marina Insani, Claudio Galmarini, Ramón Asis and Fernando Carrari for all their efforts to recover and valorize genetic resources in Argentina, also to CONICET, Universidad Nacional de Cuyo, INTA and Agencia Nacional de Promoción Científica y Tecnológica (ANPCyT) for funding under FONCYT (PICTO 08-12903 and PICTR 01942).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Knapp, S., Peralta, I.E. (2016). The Tomato (Solanum lycopersicum L., Solanaceae) and Its Botanical Relatives. In: Causse, M., Giovannoni, J., Bouzayen, M., Zouine, M. (eds) The Tomato Genome. Compendium of Plant Genomes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-53389-5_2
Download citation
DOI: https://doi.org/10.1007/978-3-662-53389-5_2
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-662-53387-1
Online ISBN: 978-3-662-53389-5
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)