Abstract
Part III is divided into two chapters—Chaps. 4 and 5. These chapters are the most important for those who want to become proficient in the routine application of CASE analysis for solving structural problems which appear in analytical laboratories. Here CASE-based solutions to 66 real-world structural problems are fully explained. Spectroscopic data for the problems were adopted mainly from Organic Letters and Journal of Natural Products, the corresponding articles being published in recent years (2011–2013). For computer-based structure elucidation, the problems we selected were primarily related to molecules possessing unique or unprecedented skeletons. Spectroscopic data for these problems are also (as described in Chap. 3) available in the form of electronic tables coded in the formats needed by Structure Elucidator. The student therefore has the possibility to repeat the solutions described in Part III and perform additional computational experiments to follow how the results change depending on the composition of the initial axiom set. This chapter describes 33 real-world problems which are solved using strict structure generation. This program mode assumes that all HMBC and COSY correlations are of “standard” lengths corresponding to the coupling constants 2−3 J CH and 2−3 J HH correspondingly.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Motti CA, Thomas-Hall P, Hagiwara KA, Simmons CJ, Willis R, Wright AD (2014) Accelerated identification of halogenated monoterpenes from Australian specimens of the red algae plocamium hamatum and plocamium costatum. J Nat Prod 77:1193–1120. doi:10.1021/np500059h
Wang CQ, Wang L, Fan CL, Zhang DM, Huang XJ, Jiang RW, Bai LL, Shi JM, Wang Y, Ye WC (2012) Ilelic acids A and B, two unusual triterpenes with a seven-membered ring from Ilex latifolia. Org Lett 14(16):4102–4105. doi:10.1021/ol301745b
Che Q, Zhu T, Qi X, Mandi A, Kurtan T, Mo X, Li J, Gu Q, Li D (2012) Hybrid isoprenoids from a reeds rhizosphere soil derived actinomycete Streptomyces sp. CHQ-64. Org Lett 14(13):3438–3441. doi:10.1021/ol301396h
Ding JH, Feng T, Li ZH, Yang XY, Guo H, Yin X, Wang GQ, Liu JK (2012) Trefolane A, a sesquiterpenoid with a new skeleton from cultures of the basidiomycete Tremella foliacea. Org Lett 14(18):4976–4978. doi:10.1021/ol302184r
Park HB, Kim YJ, Lee JK, Lee KR, Kwon HC (2012) Spirobacillenes A and B, unusual spiro-cyclopentenones from Lysinibacillus fusiformis KMC003. Org Lett 14(19):5002–5005. doi:10.1021/ol302115z
Wang XJ, Zhang GJ, Zhuang PY, Zhang Y, Yu SS, Bao XQ, Zhang D, Yuan YH, Chen NH, Ma SG, Qu J, Li Y (2012) Lycojaponicumins A-C, three alkaloids with an unprecedented skeleton from Lycopodium japonicum. Org Lett 14(10):2614–2617. doi:10.1021/ol3009478
Wang XJ, Liu YB, Li L, Yu SS, Lv HN, Ma SG, Bao XQ, Zhang D, Qu J, Li Y (2012) Lycojaponicumins D and E: two new alkaloids from Lycopodium japonicum. Org Lett 14(22):5688–5691. doi:10.1021/ol302701y
San Feliciano A, Medarde M, Miguel del Corral JM, Aramburu A, Gordaliza M, Barrero AF (1989) Tetrahedron Lett 30:2851
Lodewyk MW, Soldi C, Jones PB, Olmstead MM, Rita J, Shaw JT, Tantillo DJ (2012) The correct structure of aquatolide-experimental validation of a theoretically-predicted structural revision. J Am Chem Soc 134(45):18550–18553. doi:10.1021/ja3089394
Zou J, Pan L, Li Q, Zhao J, Pu J, Yao P, Gong N, Lu Y, Kondratyuk TP, Pezzuto JM, Fong HH, Zhang H, Sun H (2011) Rubesanolides A and B: diterpenoids from Isodon rubescens. Org Lett 13(6):1406–1409. doi:10.1021/ol200086k
Pretsch E, Bühlmann P, Affolter C (2000) Structure determination of organic compounds—tables of spectral data. Springer, Berlin
Yang F, Hamann MT, Zou Y, Zhang MY, Gong XB, Xiao JR, Chen WS, Lin HW (2012) Antimicrobial metabolites from the Paracel Islands sponge Agelas mauritiana. J Nat Prod 75(4):774–778. doi:10.1021/np2009016
Abe S, Tanaka N, Kobayashi J (2012) Prenylated acylphloroglucinols, chipericumins A-D, from Hypericum chinense. J Nat Prod 75(3):484–488. doi:10.1021/np200741x
Matsumori N, Hiradate Y, Shibata H, Oishi T, Shimma S, Toyoda M, Hayashi F, Yoshida M, Murata M, Morisawa M (2013) A novel sperm-activating and attracting factor from the ascidian Ascidia sydneiensis. Org Lett 15(2):294–297. doi:10.1021/ol303172n
Hu Y, Wang K, MacMillan JB (2013) Hunanamycin A, an antibiotic from a marine-derived Bacillus hunanensis. Org Lett 15(2):390–393. doi:10.1021/ol303376c
Zhang D, Ge H, Xie D, Chen R, Zou JH, Tao X, Dai J (2013) Periconiasins A-C, new cytotoxic cytochalasans with an unprecedented 9/6/5 tricyclic ring system from endophytic fungus Periconia sp. Org Lett 15(7):1674–1677. doi:10.1021/ol400458n
Cao M, Zhang Y, He H, Li S, Huang S, Chen D, Tang G, Di Y, Hao X (2012) Daphmacromines A-J, alkaloids from Daphniphyllum macropodum. J Nat Prod 75(6):1076–1082. doi:10.1021/np200960z
Wang SJ, Li YX, Bao L, Han JJ, Yang XL, Li HR, Wang YQ, Li SJ, Liu HW (2012) Eryngiolide A, a cytotoxic macrocyclic diterpenoid with an unusual cyclododecane core skeleton produced by the edible mushroom Pleurotus eryngii. Org Lett 14(14):3672–3675. doi:10.1021/ol301519m
Liao WY, Shen CN, Lin LH, Yang YL, Han HY, Chen JW, Kuo SC, Wu SH, Liaw CC (2012) Asperjinone, a nor-neolignan, and terrein, a suppressor of ABCG2-expressing breast cancer cells, from thermophilic Aspergillus terreus. J Nat Prod 75(4):630–635. doi:10.1021/np200866z
Elyashberg ME, Blinov KA, Molodtsov SG, Williams AJ (2013) Structure revision of asperjinone using computer-assisted structure elucidation methods. J Nat Prod 76:113–116. doi:10.1021/np300218g
Okanya PW, Mohr KI, Gerth K, Jansen R, Muller R (2011) Marinoquinolines A-F, pyrroloquinolines from Ohtaekwangia kribbensis (Bacteroidetes). J Nat Prod 74(4):603–608. doi:10.1021/np100625a
Luo X, Shi YM, Luo RH, Luo SH, Li XN, Wang RR, Li SH, Zheng YT, Du X, Xiao WL, Pu JX, Sun HD (2012) Schilancitrilactones A-C: three unique nortriterpenoids from Schisandra lancifolia. Org Lett 14(5):1286–1289. doi:10.1021/ol300099e
Ponnapalli MG, Annam S, Ravirala S, Sukki S, Ankireddy M, Tuniki VR (2012) Unusual isomeric corniculatolides from mangrove, Aegiceras corniculatum. J Nat Prod 75(2):275–279. doi:10.1021/np200789s
Guo Z, She Z, Shao C, Wen L, Liu F, Zheng Z, Lin Y (2007) 1H and 13C NMR signal assignments of Paecilin A and B, two new chromone derivatives from mangrove endophytic fungus Paecilomyces sp. (tree 1-7). Magn Reson Chem 45:777–780. doi:10.1002/mrc.2035
Elyashberg ME, Williams AJ, Blinov KA (2012) Contemporary computer-assisted approaches to molecular structure elucidation, vol 1. New developments in NMR. RSC Publishing, Cambridge
Zhao BX, Wang Y, Zhang DM, Huang XJ, Bai LL, Yan Y, Chen JM, Lu TB, Wang YT, Zhang QW, Ye WC (2012) Virosaines A and B, two new birdcage-shaped Securinega alkaloids with an unprecedented skeleton from Flueggea virosa. Org Lett 14(12):3096–3099. doi:10.1021/ol301184j
Le Goff G, Martin MT, Servy C, Cortial S, Lopes P, Bialecki A, Smadja J, Ouazzani J (2012) Isolation and characterization of alpha, beta-unsaturated gamma-lactono-hydrazides from Streptomyces sp. J Nat Prod 75(5):915–919. doi:10.1021/np300026p
Reina M, Ruiz-Mesia W, Lopez-Rodriguez M, Ruiz-Mesia L, Gonzalez-Coloma A, Martinez-Diaz R (2012) Indole alkaloids from Geissospermum reticulatum. J Nat Prod 75(5):928–934. doi:10.1021/np300067m
Wyche TP, Hou Y, Vazquez-Rivera E, Braun D, Bugni TS (2012) Peptidolipins B-F, antibacterial lipopeptides from an ascidian-derived Nocardia sp. J Nat Prod 75(4):735–740. doi:10.1021/np300016r
Chen Z, Song Y, Chen Y, Huang H, Zhang W, Ju J (2012) Cyclic heptapeptides, cordyheptapeptides C−E, from the marine-derived fungus acremonium Persicinum SCSIO 115 and their cytotoxic activities. J Nat Prod 75(6):1215–1219
Sorres J, Martin MT, Petek S, Levaique H, Cresteil T, Ramos S, Thoison O, Debitus C, Al-Mourabit A (2012) Pipestelides A-C: cyclodepsipeptides from the Pacific marine sponge Pipestela candelabra. J Nat Prod 75(4):759–763. doi:10.1021/np200714m
Dai J, Liu Y, Zhou YD, Nagle DG (2007) Cytotoxic metabolites from an Indonesian sponge Lendenfeldia sp. J Nat Prod 70(11):1824–1826. doi:10.1021/np070337f
Podlesny EE, Kozlowski MC (2012) Structural reassignment of a marine metabolite from a binaphthalenetetrol to a tetrabrominated diphenyl ether. J Nat Prod 75(6):1125–1129. doi:10.1021/np300141t
Chen M, Lin S, Li L, Zhu C, Wang X, Wang Y, Jiang B, Wang S, Li Y, Jiang J, Shi J (2012) Enantiomers of an indole alkaloid containing unusual dihydrothiopyran and 1,2,4-thiadiazole rings from the root of Isatis indigotica. Org Lett 14(22):5668–5671. doi:10.1021/ol302660t
Lorente A, Pla D, Canedo LM, Albericio F, Alvarez M (2010) Isolation, structural assignment, and total synthesis of barmumycin. J Org Chem 75(24):8508–8515. doi:10.1021/jo101834c
Uehata K, Kimura N, Hasegawa K, Arai S, Nishida M, Hosoe T, Kawai K, Nishida A (2013) Total synthesis of schizocommunin and revision of its structure. J Nat Prod 76(11):2034–2039. doi:10.1021/np400263f
Elyashberg M, Williams AJ, Blinov K (2010) Structural revisions of natural products by computer-assisted structure elucidation (CASE) systems. Nat Prod Rep 27(9):1296–1328. doi:10.1039/c002332a
Sakano Y, Shibuya M, Yamaguchi Y, Masuma R, Tomoda H, Omura S, Ebizuka Y (2004) Epohelmins A and B, novel lanosterol synthase inhibitors from a fungal strain FKI-0929. J Antibiot (Tokyo) 57(9):564–568
Snider BB, Gao X (2005) Structure revision and syntheses of epohelmins A and B. Org Lett 7(20):4419–4422. doi:10.1021/ol0516061
Nicolaou KC, Snyder SA (2005) Chasing molecules that were never there: misassigned natural products and the role of chemical synthesis in modern structure elucidation. Angew Chem Int Ed 44:1012–1044. doi:10.1002/anie.200460864
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
Copyright information
© 2015 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Elyashberg, M.E., Williams, A.J. (2015). Structure Elucidation Using Strict Structure Generation. In: Computer–Based Structure Elucidation from Spectral Data. Lecture Notes in Chemistry, vol 89. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-46402-1_4
Download citation
DOI: https://doi.org/10.1007/978-3-662-46402-1_4
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-662-46401-4
Online ISBN: 978-3-662-46402-1
eBook Packages: Chemistry and Materials ScienceChemistry and Material Science (R0)