Abstract
The classes Sordariomycetes and Leotiomycetes comprise a large group of nonlichenized ascomycetous fungi, in which over 15,000 species have been described. The close evolutionary relationship of the two classes was recently defined by molecular phylogenetic analyses and subcellular data. Typically, these fungi produce inoperculate, unitunicate asci in perithecial or apothecial ascomata. Sordariomycetes and Leotiomycetes represent a wide range of ecology, including saprobes, plant endophytes, plant pathogens, mycoparasites, and insect and other animal associates. During the past two decades, fungal classification has been considerably advanced but also challenged by rapid developments in molecular phylogeny, genome sequencing, and metagenomics. Here we review history and progress in the phylogenetic classification of these taxa at familial and ordinal levels since the first edition of Mycota VII. Geoglossomycetes and Laboulbeniomycetes are also included. Problems and perspectives associated with studying these fungi in the genomic era are discussed.
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References
Abbott SP, Sigler L, Currah RS (1998) Microascus brevicaulis sp. nov., the teleomorph of Scopulariopsis brevicaulis, supports placement of Scopulariopsis with the Microascaceae. Mycologia 90:297–302
Acero FJ, González J, Sáchez-Ballesteros J, Rubio V, Checa J, Bills G, Salazar O, Platas G, Peláez F (2004) Molecular phylogenetic studies on the Diatrypaceae based on rDNA-ITS sequences. Mycologia 96:249–259
Aguileta G, Hood ME, Refregier G, Giraud T (2009) Genome evolution in plant pathogenic and symbiotic fungi. Adv Bot Res 49:151–193
Alexopoulos CJ, Mims CW, Blackwell M (1996) Introductory mycology. Wiley, New York
Amano K (1986) Host range and geographical distribution of the powdery mildew fungi. Japan Scientific Societies, Tokyo
Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541–549
Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R (2007) Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia 99:185–206
Baral HO (1987) Der Apikalapparat der Helotiales. Eine lichtmikroskopische Studies über Arten mit Amyloidring. Z Mykol 53:119–135
Barr ME (1976) Perspectives in the Ascomycotina. Mem N Y Bot Gard 28:1–8
Barr ME (1977) Magnaporthe, Telimenella and Hyponectria (Physosporellaceae). Mycologia 69:952–966. doi:10.2307/3758778
Barr ME (1978) The Diaporthales in North America. Mycol Mem 7:1–232
Barr ME (1990) Prodromus to nonlichenized, pyrenomycetous members of Class Hymenoascomycetes. Mycotaxon 39:43–184
Bellemère A (1994) Asci and ascospores. In: Hawksworth DL (ed) Ascomycete systematics: problems and perspectives in the nineties. Plenum, New York, pp 111–126
Benjamin RK, Blackwell M, Humber RA, Jones KG, Klepzig KA, Lichtwardt RW, Malloch D, Noda H, Roeper RA, Spatafora JW, Weir A (2000) The search for diversity of insect and other arthropod-associated fungi. In: Mueller GA, Bills G, Foster MS (eds) Measuring and monitoring biological diversity: standard methods for fungi. Smithsonian Institution, Washington, DC
Blackwell M (1994) Minute mycological mysteries: the influence of insects on the lives of fungi. Mycologia 86:1–17
Blackwell M, Mallach D (1989) Pyxidiophora: life histories and arthropod associations of two species. Can J Bot 67:2552–2562
Blackwell M, Hibbett DS, Taylor JW, Spatafora JW (2006) Research coordination network: a phylogeny for kingdom fungi (deep Hypha). Mycologia 98:829–837
Brock PM, Döring H, Bidartondo MI (2009) How to know unknown fungi: the role of a herbarium. New Phytol 181:719–724
Buée M et al (2009) 454 pyrosequencing analyses of forest soils reveal an unexpected high fungal diversity. New Phytol 184:449–456
Bugni TS, Ireland CM (2004) Marine-derived fungi: a chemically and biologically diverse group of microorganisms. Nat Prod Rep 21:143–163
Bunyard BA, Wang Z, Malloch D, Clayden S, Voitk A (2008) New North American records for Ascocoryne turficola (Ascomycota: Helotiales). Fungi 1:23–31
Cain RF, Weresub LK (1957) Studies of coprophilous ascomycetes. V. Sphaeronaemella fimicola. Can J Bot 35:119–131
Campbell J, Volkmann-Kohlmeyer B, Gräfenhan T, Spatafora JW, Kohlmeyer J (2005) A re-evaluation of Lulworthiales: relationships based on 18S and 28S rDNA. Mycol Res 109:556–568
Campbell J, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B (2009) Koralionastetales, a new order of marine Ascomycota in the Sordariomycetes. Mycol Res 113:373–380. doi:10.1016/j.mycres.2008.11.013
Carpenter SE (1988) Leotiales, a name to replace Helotiales (Ascomycotina). Mycologia 80:127–130
Carroll G (1988) Fungal endophytes in stems and leaves – from latent pathogen to mutualistic symbiont. Ecology 69:2–9. doi:10.2307/1943154
Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017–1031
Castlebury LA, Rossman AY, Sung G-H, Hyten AS, Spatafora JW (2004) Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus. Mycol Res 108:864–872
Celio GJ, Padamsee M, Dentinger BTM, Bauer R, McLaughlin DJ (2006) Assembling the fungal tree of life: constructing the structural and biochemical database. Mycologia 98:850–859. doi:10.3852/mycologia.98.6.850
Chaverri P, Castlebury LA, Overton BE, Samuels GJ (2003) Hypocrea/Trichoderma: species with conidiophore elongations and green conidia. Mycologia 95:1100–1140
Couch BC, Fudal I, Lebrun MH, Tharreau D, Valent B, van Kim P, Notteghem JL, Kohn LM (2005) Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics 170:613–630
de Hoog GS, Göttlich E, Platas G, Genilloud O, Leotta G, van Brummelen J (2005) Evolution, taxonomy and ecology of the genus Thelebolus in Antarctica. Stud Mycol 51:33–76
Dennis RWG (1978) British Ascomycetes. J Gramer, Leher, pp 1–455
Eriksson O (1983) Outline of the Ascomycetes – 1983. Syst Ascomyc 2:1–37
Eriksson OE (1999) Outline of Ascomycota. Myconet 3:1–88
Eriksson OE (2005) Outline of Ascomycota. Myconet 11:1–113
Eriksson OE (2006) Outline of Ascomycota. Myconet 12:1–82
Eriksson OE, Winka K (1997) Supraordinal taxa of Ascomycota. Myconet 1:1–16
Fernández F, Huhndorf S (2005) New species of Chaetosphaeria, Melanopsammella and Tainosphaeria gen. nov. from the Americas. Fungal Divers 18:15–57
Fillinger S, Amselem J, Artiguenave F, Billaut A, Choquer M, Couloux A, Cuomo C, Dickman MB, Fournier E, Gioti A, Giraud C, Kodira C, Kohn L, Legeai F, Levis C, Mauceli E, Pommier C, Pradier JM, Quevillon E, Rollins J, Ségurens B, Simon A, Viaud M, Weissenbach J, Wincker P, Lebrun M-H (2007) The genome projects of the plant pathogenic fungi Botrytis cinerea and Sclerotinia sclerotiorum. In: Clément C, Conreux A, Jeandet P (eds) Macromolecules of grape and wines. Lavoisier, Paris, pp 125–133
Fitzpatrick DA, Logue ME, Stajich JE, Butler G (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol 6:99. doi:10.1186/1471-2148-6-99
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859–868
Gallery RE, Dalling JW, Arnold AE (2007) Diversity, host affinity, and distribution of seed-infecting fungi: a case study with Cecropia. Ecology 88:582–588
Gams W (2000) Phialophora and some similar morphologically little-differentiated anamorphs of divergent ascomycetes. Stud Mycol 45:187–199
Geiser DM, Gueidan C, Miadlikowska J, Lutzoni F, Kauff F, Hofstetter V, Fraker E, Schoch CL, Tibell L, Untereiner WA, Aptroot A (2006) Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia 98:1053–1064
Gernandt DS, Platt JL, Stone JK, Spatafora JW, Holst-Jensen A, Hamelin RC, Kohn LM (2001) Phylogenetics of Helotiales and Rhytismatales based on partial small subunit nuclear ribosomal DNA sequences. Mycologia 93:915–933
Glawe D, Rogers J (1982) Observations on the anamorphs of six species of Diatrype and Diatrypella. Can J Bot 60:245–251
Grünig CR, Queloz V, Duò A, Sieber TN, Holdenrieder O (2008) Dark septate endophytes (DSE) of the Phialocephala fortinii s.l. – Acephala applanata species complex in tree roots – classification, population biology and ecology. Botany 86:1355–1369
Grünig CR, Queloz V, Duò A, Sieber TN (2009) Phylogeny of Phaeomollisia piceae gen. sp. nov.: a dark, septate, conifer-needle endophyte and its relationships to Phialocephala and Acephala. Mycol Res 113:207–221
Gugnani HC, Talwar RS, Njoku-Obi AN, Kodilinye HC (1976) Mycotic keratitis in Nigeria. A study of 21 cases. Br J Ophthalmol 60:607–613
Hambleton S, Sigler L (2005) Meliniomyces, a new anamorph genus for root-associated fungi with phylogenetic affinities to Rhizoscyphus ericae (=Hymenoscyphus ericae) Leotiomycetes. Stud Mycol 53:1–27
Hansen K, Pfister DH (2006) Systematics of the Pezizomycetes – the operculate discomycetes. Mycologia 98:1029–1040
Hansford CG (1961) The Meliolineae. Syd Ann Mycol II Beihefte 2:1–806
Hansford CG (1963) Iconographia meliolinearum. Syd Ann Mycol II Beihefte 5:1–285
Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004) Trichoderma species-opportunistic, avirulent pant symbionts. Nat Rev Microbiol 2:43–56
Hartmann M, Lee S, Hallam SJ, Mohn WW (2009) Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands. Environ Microbiol 11:3045–3062
Hawksworth DL (ed) (1995) Ascomycete systematics, problems and perspectives in the nineties. NATO ASI series. Plenum, New York, p 453
Hawksworth DL, Sutton BC, Ainsworth GC (1983) Ainsworth & Bisby’s dictionary of the fungi (including the lichens). Commonwealth Mycological Institute, Kew
Herrera P, Suarez JP, Kottke I (2010) Orchids keep the ascomycetes outside: a highly diverse group of ascomycetes colonizing the velamen of epiphytic orchids from a tropical mountain rainforest in Southern Ecuador. Mycology 1:262–268
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James TY, Kirk PM, Lucking R, Lumbsch HT, Lutzoni FL, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Koljag U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schußler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, Zhang N (2007) A higher-level phylogenetic classification of the fungi. Mycol Res 111:509–547
Higgins KL, Coley PD, Kursar TA, Arnold AE (2011) Culturing and direct PCR suggest prevalent host generalism among diverse fungal endophytes of tropical forest grasses. Mycologia 103:247–260
Hilber R, Hilber O (2002) The genus Lasiosphaeria and allied taxa. Author, Germany, p 9
Hodge K (2003) Clavicipitaceous anamorphs. In: White JJ, Bacon C, Hywel-Jones NL, Spatafora J (eds) Clavicipitalean fungi: evolutionary biology, chemistry, biocontrol, and cultural impacts. Marcel Dekker, New York, pp 75–123
Hosoya T, Sasagawa R, Hosaka K, Gi-Ho S, Hirayama Y, Yamaguchi K, Toyama K, Kakishima M (2010) Molecular phylogenetic studies of Lachnum and its allies based on the Japanese material. Mycoscience 51:170–181
Hsieh H-M, Ju Y-M, Rogers J (2005) Molecular phylogeny of Hypoxylon and closely related genera. Mycologia 97:844–865
Hsieh H, Lin C, Fang M, Rogers JD, Fournier J, Lechat C, Ju Y-M (2010) Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phyl Evol 54:957–969
Huhndorf SM, Miller AN, Fernandez FA (2004a) Molecular systematics of the Coronophorales and new species of Bertia, Lasiohertia and Nitschkia. Mycol Res 108:1384–1398
Huhndorf SM, Miller AN, Fernandez FA (2004b) Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96:368–387
Huhndorf SM, Greif M, Mugambi GK, Miller AN (2008) Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella. Mycologia 100:940–955
Huhtinen S (1989) A monograph of Hyaloscypha and allied genera. Karstenia 29:45–252
Inderbitzin P, Lim SR, Volkmann-Kohlmeyer B, Kohlmeyer J, Berbee ML (2004) The phylogenetic position of Spathulospora based on DNA sequences from dried herbarium material. Mycol Res 108:737–748
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung G-H, Johnson D, O’Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schußler A, Longcore JE, O’Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lucking R, Budel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R (2006) Reconstructing the early evolution of fungi using a six-gene phylogeny. Nature 443:818–822
Johnston RP (1997) Tropical Rhytismatales. In: Hyde KD (ed) Biodiversity of tropical microfungi. Hong Kong University Press, Hong Kong, pp 241–254
Ju YM, Hsieh HM, He XS (2011) Xylaria coprinicola, a new species that antagonizes cultivation of Coprinus comatus in China. Mycologia 103:424–430. doi:10.3852/10-215
Ju Y-M, Rogers J (1996) A revision of the genus Hypoxylon. Mycol Mem 20:1–365
Jumpponen A, Jones KL (2009) Massively parallel 454-sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol 184:438–448
Kang JC, Hyde KD, Kong RYC (1999) Studies on Amphisphaeriales: the Cainiaceae. Mycol Res 103:1621–1627. doi:10.1017/S0953756299001264
Kang JC, Kong R, Hyde KD (2002) Phylogeny of Amphisphaeriaceae (sensu stricto) and related taxa revisited based on nrDNA sequences. Mycotaxon 81:321–330
Kimbrough JW (1981) The discomycete centrum. In: Reynolds RD (ed) Ascomycete systematics: the Luttrellian concept. Springer, Berlin, pp 92–101
Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth & Bisby’s dictionary of the fungi, 8th edn. CABI Bioscience, Surrey
Kirk PM, Cannon PF, Minter DW, Stalpers JA (eds) (2008) Ainsworth and Bisby’s dictionary of the fungi. CAB International, Wallingford
Kohlmeyer J, Charles TM (1981) Sclerocarps: undescribed propagules in a sand-inhabiting marine fungus. Can J Bot 59:1787–1791
Kohlmeyer J, Volkmann-Kohlmeyer B (2002) Fungi on Juncus and Spartina: new marine species of Anthostomella, with a list of marine fungi known on Spartina. Mycol Res 106:365–374
Kohlmeyer J, Spatafora JW, Volkmann-Kohlmeyer B (2000) Lulworthiales, a new order of marine Ascomycota. Mycologia 92:453–458
Korf RP (1973) Discomycetes and Tuberales. In: Ainsworth GC, Sparrow FK, Sussman AS (eds) The fungi: an advanced treatise, vol IVA. Academic Press, New York, pp 249–319
Krause RA, Webster RK (1972) The morphology, taxonomy, and sexuality of the rice stem rot fungus, Magnaporthe salvinii (Leptosphaeria salvinii). Mycologia 64:103–114. doi:10.2307/3758018
Landvik S, Kristiansen R, Schumacher T (1998) Phylogenetic and structural studies in the Thelebolaceae (Ascomycota). Mycoscience 39:49–56
Lantz H, Johnston PR, Park D, Minter DW (2010) Molecular phylogeny reveals a core clade of Rhytismatales. Mycologia 103:57–74
Lantz H, Johnston PR, Park D, Minter DW (2011) Molecular phylogeny reveals a core clade of Rhytismatales. Mycologia 103:57–74. doi:10.3852/10-060
Leal J, Prieto A, Bernabe M, Hawksworth DL (2010) An assessment of fungal wall heteromannans as a phylogenetically informative character in ascomycetes. FEMS Microbiol Rev 34:986–1014. doi:10.1111/j.1574-6976.2010.00225.x
Liu YJ, Hall BD (2004) Body plan evolution of ascomycetes, as inferred from an RNA polymerase II, phylogeny. Proc Natl Acad Sci U S A 101:4507–4512. doi:10.1073/pnas.0400938101
Liu K, Raghavan S, Nelesen S, Linder CR, Warnow T (2009) Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 324:1561–1564
Livsey S, Monter DW (1994) The taxonomy and biology of Tryblidiopsis pinastri. Can J Bot 72:549–557
LoBuglio KF, Pfister DH (2010) Placement of Medeolaria farlowii in Leotiomycetes and comments on sampling within the class. Mycol Prog 9:361–368
Locquin MV (1984) Classification Générale des Mycota. Mycologie Générale et Structurale. Masson, Paris, pp 169–175
Lord KM, Read ND (2011) Perithecium morphogenesis in Sordaria macrospora. Fungal Genet Biol 48:388–399. doi:10.1016/j.fgb.2010.11
Lumbsch HT, Huhndorf SM (2007a) Whatever happened to the pyrenomycetes and loculoascomycetes? Mycol Res 111:1064–1074
Lumbsch HT, Huhndorf SM (2007b) Outline of Ascomycota – 2007. Myconet 13:1–58
Lumbsch HT, Huhndorf SM (2010) Life and earth sciences no. 1 Fieldiana. Myconet 14:1–64
Lumbsch HT, Schmitt L, Lindemuth R, Miller A, Mangold A, Fernandez F, Huhndorf S (2005) Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta). Mol Phylogenet Evol 34:512–524. doi:10.1016/j.ympev.2004.11.007
Luttrell ES (1951) Taxonomy of the pyrenomycetes. Univ Missouri Stud 24:1–120
Luttrell ES (1989) Morphology of Meliola floridensis. Mycologia 81:192–204
Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, Miadlikowska J, Spatafora JW, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung G-H, Lücking R, Lumbsch T, O’Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim Y-W, Matheny B, Nishida H, Pfister D, Rogers J, Rossman A, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr Y, Vilgalys R (2004) Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. Am J Bot 91:1446–1480
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH, Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M (2010) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464:367–373. doi:10.1038/nature08850
Malloch D (1981) The plectomycete centrum. In: Reynold DR (ed) Ascomycete systematics. Springer, New York, pp 73–91
McLaughlin DJ, McLaughlin EG, Lemke PA (eds) (2001) The Mycota VIIA, VIIB: systematics and evolution. Springer, Heidelberg
Mengoni T (1986) El aparato apical del asco de Cyttaria harioti (Ascomycetes-Cyttariales) con microscopia fotonica y electonica. Bull Soc Argent Bot 24:393–401
Miller AN, Huhndorf SM (2005) Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Mol Phylogenet Evol 35:60–75
Minter DW, Cannon PF (1984) Ascospore discharge in some members of the Rhytismataceae. Trans Br Mycol Soc 83:65–92
Morris MH, Pérez-Pérez MA, Smith ME, Bledsoe CS (2008) Multiple species of ectomycorrhizal fungi are frequently detected on individual oak root tips in a tropical cloud forest. Mycorrhiza 18:375–383
Müller E, von Arx J (1973) Pyrenomycetes: Meliolales, Coronophorales, Sphaeriales. In: Ainsworth G, Sparrow F, Sussman A (eds) The fungi IV. Academic Press, New York, pp 87–132
Nakagiri A (1984) Two new species of Lulworthia and evaluation of genera-delimiting characters between Lulworthia and Lindra (Halosphaeriaceae). Trans Mycol Soc Jpn 25:377–388
Nakagiri A, Tubaki K (1983) Lindra obtusa, a new marine ascomycete and its Anguillospora anamorph. Mycologia 75:487–497
Nannfeldt JA (1932) Studien über die Morphologie und Systematik der nicht-lichenisierten inoperculaten Discomyceten. Nova Acta Reg Soc Sci Ups IV 8:1–368
Napoli C, Mello A, Borra A, Vizzini A, Sourzat P, Bonfante P (2010) Tuber melanosporum, when dominant, affects fungal dynamics in truffle grounds. New Phytol 185:237–247
O’Brien HE, Parrent JL, Jackson JA, Moncalvo J, Vilgalys R (2005) Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 71:5544–5550
O’Donnell K, Sutton DA, Rinaldi MG, Sarver BAJ, Balajee SA, Schroers HJ, Summerbell RC, Robert VARG, Crous PW, Zhang N, Aoki T, Jung K, Park J, Lee YH, Kang S, Park B, Geiser DM (2010) Internet-accessible DNA sequence database for identifying Fusaria from human and animal infections. J Clin Microbiol 48:3708–3718. doi:10.1128/JCM. 00989-10
Ohenoja E, Wang Z, Townsend JP, Mitchel D, Votik A (2010) Northern species of earth tongue genus Thuemenidium revisited, considering morphology, ecology and molecular phylogeny. Mycologia 102:1089–1095
Okada G, Seifert KA, Takematsu A, Yamaoka Y, Miyazaki S, Tubaki K (1998) A molecular phylogenetic reappraisal of the taxonomy of the Graphium complex based on 18S rDNA sequences. Can J Bot 76:1495–1506
Pelaez F, Gonzalez V, Platas G, Sanchez-Ballesteros J, Rubio V (2008) Molecular phylogenetic studies within the Xylariaceae based on ribosomal DNA sequences. Fungal Divers 31:111–134
Peterson KR, Pfister DH (2010) Phylogeny of Cyttaria inferred from nuclear and mitochondrial sequence and morphological data. Mycologia 102:1398–1416
Peterson KR, Pfister DH, Bell CD (2010) Cophylogeny and biogeography of the fungal parasite Cyttaria and its host Nothogagus, southern beech. Mycologia 102:1417–1425
Pfister DH, Kimbrough JW (2001) Discomycetes. In: McLaughlin DJ, McLaughlin EG, Lemke PA (eds) The Mycota VIIA, VIIB: systematics and evolution. Springer, Berlin, pp 257–281
Queloz V, Sieber TN, Holdenrieder O, McDonald BA, Grünig CR (2011) No biogeographical pattern for a root-associated fungal species complex. Global Ecol Biogeogr 20:160–169
Raja H, Shearer CA (2008) Freshwater ascomycetes: new and noteworthy species from aquatic habitats in Florida. Mycologia 100:467–489. doi:10.3852/07-167R
Read ND, Beckett A (1996) Ascus and ascospore morphogenesis. Mycol Res 100:1281–1314
Réblová M, Seifert KA (2004) Cryptadelphia (Trichosphaeriales), a new genus for holomorphs with Brachysporium anamorphs and clarification of the taxonomic status of Wallrothiella. Mycologia 96:343–367. doi:10.2307/3762067
Réblová M, Winka K (2000) Phylogeny of Chaetosphaeria and its anamorphs based on morphological and molecular data. Mycologia 92:939–954
Réblová M, Gams W, Seifert KA (2011) Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales. Stud Mycol 68:163–191. doi:10.3114/sim.2011.68.07
Robbertse B, Reeves JB, Schoch CL, Spatafora JW (2006) A phylogenomic analysis of the Ascomycota. Fungal Genet Biol 43:715–725. doi:10.1016/j.fgb.2006.05.001
Rogerson CT, Samuels GJ (1989) Boleticolous species of Hypomyces. Mycologia 81:413–432
Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425:798–804
Rossman A, Samuels G, Rogerson C, Lowen R (1999) Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248
Saenz GS, Taylor JW, Gargas A (1994) 18S rRNA gene sequences and supraordinal classification of the Erysiphales. Mycologia 86:212–216
Samuels GJ (2006) Trichoderma: systematics, the sexual state, and ecology. Phytopathology 96:195–206
Samuels GJ, Blackwell M (2001) Pyrenomycetes-fungi with perithecia. In: McLaughlin DJ, McLaughlin EG, Lemke PA (eds) The Mycota VII part A. Springer, Berlin, pp 221–255
Samuels GJ, Müller E (1978) Life history studies of Brazilian Ascomycetes 5. Two new species of Ophiostoma and their Sporothrix anamorphs. Sydowia 31:169–179
Samuels GJ, Lu BS, Chaverri P, Candoussau F, Fournier J, Rossman AY (2009) Cyanonectria, a new genus for Nectria cyanostoma and its Fusarium anamorph. Mycol Prog 8:49–58. doi:10.1007/s11557-008-0577-x
Sánchez-Ballesteros J, González V, Salazar O, Acero J, Portal M, Julián M, Rubio V, Bills G, Polishook J, Platas G, Mochales S, Peláez F (2000) Phylogenetic study of Hypoxylon and related genera based on ribosomal ITS sequences. Mycologia 92:964–977
Sati SC, Belwall M (2005) Aquatic hyphomycetes as endophytes of riparian plant roots. Mycologia 97:45–49
Schoch CL, Sung GH, Volkmann-Kohlmeyer B, Kohlmeyer J, Spatafora JW (2007) Marine fungal lineages in the Hypocreomycetidae. Mycol Res 111:154–162
Schoch CL, Sung G-H, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Andrie R, Trippe K, Ciuffetti L, Amtoft A, Fraker E, Hodkinson BP, Bonito G, Lutzoni F, Groenewald JZ, Arzanlou M, de Hoog S, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh S-O, Blackwell M, Hillis DM, Griffith G, Castlebury L, Rossman A, Lumbsch HT, Lücking R, Diederich P, Ertz D, Geiser D, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O’Donnell K, Rogers J, Shoemaker R, Sugiyama J, Summerbell R, Untereiner W, Johnston P, Stenroos S, Zuccaro A, Dyer P, Crittenden P, Trappe JM, Spatafora JW (2009a) The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58:224–239
Schoch CL, Wang Z, Townsend JP, Spatafora JW (2009b) Geoglossomycetes cl. nov., Geoglossales ord. nov. and taxa above class rank in the Ascomycota tree of life. Persoonia 22:129–138
Schumacher T, Sivertsen S (1987) Sarcoleotia globosa (Sommerf.:Fr.) Korf, taxonomy, ecology and distribution. In: Larsen GA et al (eds) Arctic alpine mycology. Plenum, New York, pp 163–176
Seephueak P, Petcharat V, Phongpaichit S (2010) Fungi associated with leaf litter of para rubber (Hevea brasiliensis). Mycology 1:213–227
Seifert KA, Gams W (2001) The taxonomy of anamorphic fungi. In: McLaughlin DJ, McLaughlin EG, Lemke PA (eds) The Mycota VII part A. Springer, Berlin, pp 307–347
Selosse M, Vohnik M, Chauvet E (2008) Out of the rivers: are some aquatic hyphomycetes plant endophytes? New Phytol 178:3–7
Shearer CJ (1993) The freshwater ascomycetes. Nova Hedwigia 56:1–33
Singleton LL, Mihail JD, Rush CM (eds) (1992) Methods for research on soil-borne phytopathogenic fungi. American Phytopathological Society Press, St. Paul, MN
Smith GJD, Liew ECY, Hyde KD (2003) The Xylariales: a monophyletic order containing 7 families. Fungal Divers 13:175–208
Smith D, Onions HS (1983) The preservation and maintenance of living fungi. Commonwealth Mycological Institute, Kew
Soca-Chafre G, Rivera-Orduna FN, Hidalgo-Lara ME, Hernandez-Rodriguez C, Marsch R, Flores-Cotera LB (2011) Molecular phylogeny and paclitaxel screening of fungal endophytes from Taxus globosa. Fungal Biol 115:143–156
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D, Harriman J, Hoede C, King BC, Klages S, Kleemann J, Knoll D, Koti PS, Kreplak J, López-Ruiz FJ, Lu X, Maekawa T, Mahanil S, Micali C, Milgroom MG, Montana G, Noir S, O’Connell RJ, Oberhaensli S, Parlange F, Pedersen C, Quesneville H, Reinhardt R, Rott M, Sacristán S, Schmidt SM, Schön M, Skamnioti P, Sommer H, Stephens A, Takahara H, Thordal-Christensen H, Vigouroux M, Wessling R, Wicker T, Panstruga R (2010) Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330:1543–1546
Spatafora JW, Blackwell M (1994) The polyphyletic origins of ophiostomatoid fungi. Mycol Res 98:1–9
Spatafora JW, Volkmann-Kohlmeyer B, Kohlmeyer J (1998) Independent terrestrial origins of the Halosphaeriales (marine Ascomycota). Am J Bot 85:1569–1580
Spatafora JW, Sung GH, Johnson D, Hesse C, O’Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, Schmitt I, Hosaka K, Aptroot A, Roux C, Miller AN, Geiser DM, Hafellner J, Hestmark G, Arnold AE, Büdel B, Rauhut A, Hewitt D, Untereiner WA, Cole MS, Scheidegger C, Schultz M, Sipman H, Schoch CL (2006) A five-gene phylogeny of Pezizomycotina. Mycologia 98:1018–1028
Spooner BM (1987) Helotiales of Australasia: Geoglossaceae, Orbiliaceae, Sclerotiniaceae, Hyaloscyphaceae. Bibl Mycol 116:1–711
Stenroos S, Laukka T, Huhtinen S, Döbbeler P, Myllys L, Syrjänen K, Hyvönen J (2009) Multiple origins of symbioses between ascomycetes and bryophytes suggested by a five-gene phylogeny. Cladistics 25:1–20
Strobel G, Tomsheck A, Geary B, Spakowicz D, Strobel S, Mattner S, Mann R (2010) Endophyte strain NRRL50072 producing volatile organics is a species of Ascocoryne. Mycology 1:187–194
Suh SO, Blackwell M (1999) Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudeurotiaceae. Mycologia 91:836–848
Summerbell R (2003) Aspergillus, Fusarium, Sporothrix, Piedraia, and their relatives. In: Howard DH (ed) Pathogenic fungi in humans and animals. Marcel Dekker, New York, pp 237–498
Sung GH, Sung JM, Hywel-Jones NL, Spatafora JW (2007) A multi-gene phylogeny of Clavicipitaceae (Ascomycota, fungi): identification of localized incongruence using a combinational bootstrap approach. Mol Phyl Evol 44:1204–1222
Sutton BC, Hennebert GL (1995) Interconnections amongst anamorphs and their possible contribution to ascomycetes systematics. In: Hawksworth DL (ed) Ascomycete systematics: problems and perspectives in the nineties. Plenum, New York, pp 77–100
Takamatsu S (2004) Phylogeny and evolution of the powdery mildew fungi (Erysiphales, Ascomycota) inferred from nuclear ribosomal DNA sequences. Mycoscience 45:147–157
Takamasu S, Niinomi S, de Alvarez MGG, Alvarez RE, Havrylenko M, Braun U (2005) Caespitotheca gen. nov., an ancestral genus in the Erysiphales. Mycol Res 109:903–911
Takamasu S, Niinomi S, Harada M, Havrylenko M (2010) Molecular phylogenetic analyses reveal a close evolutionary relationship between Podospheara (Erysiphales: Erysiphaceae) and its rosaceous hosts. Persoonia 24:38–48
Tang AMC, Jeewon R, Hyde KD (2007) Phylogenetic utility of protein (RPB2, beta-tubulin) and ribosomal (LSU, SSU) gene sequences in the systematics of Sordariomycetes (Ascomycota, fungi). Anton Leeuw Int J G Mol Microbiol 91:327–349. doi:10.1007/s10482-006-9120-8
Tavares II (1985) Laboulbeniales. Mycol Mem 9:1–627
Tedersoo L, Pärtel K, Jalrus T, Gates G, Põldmaak K, Tamm H (2009) Ascomycetes associated with ectomycorrhizas: molecular diversity and ecology with particular reference to the Helotiales. Environ Microbiol 11:3166–3178
Thaxter R (1896) Contribution towards a monograph of the Laboulbeniales. Mem Am Acad Arts Sci 12:187–429
Thongkantha S, Jeewon R, Vijaykrishna D, Lumyong S, McKenzie E, Hyde KD (2009) Molecular phylogeny of Magnaporthaceae (Sordariomycetes) with a new species Ophioceras chiangdaoense from Dracaena loureiroi in Thailand. Fungal Divers 34:157–173
Triebel D, Derek P, Wollweber H, Stadler M (2005) Phylogenetic relationships among Daldinia, Entonaema, and Hypoxylon as inferred from ITS nrDNA analyses of Xylariales. Nova Hedwigia 80:25–43
Upson R, Newsham KK, Bridge PD, Pearce DA, Read DJ (2009) Taxonomic affinities of dark septate root endophytes of Colobauthus quitensis and Deschampsia autarctica, the two native Antarctic vascular plant species. Fungal Ecol 2:184–196
U’Ren JM, Lutzoni F, Miadlkowska J, Arnold AE (2010) Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens. Microb Ecol 60:340–353
Verkley GJM (1994) Ultrastructure of the apical apparatus in Leotia lubrica and some Geoglossaceae (Leotiales, Ascomycotina). Persoonia 15:405–430
Verkley GJM (1996) Ultrastructure of the ascus in the genera Lachnum and Trichopeziza (Hyaloscyphaceae, Ascomycotina). Nova Hedwigia 63:215–228
Vijaykrishna D, Mostert L, Jeewon R, Gams W, Hyde KD, Crous PW (2004) Pleurostomophora, an anamorph of Pleurostoma (Calosphaeriales), a new anamorph genus morphologically similar to Phialophora. Stud Mycol 50:387–395
Wanderlei-Silva D, Neto E, Hanlin RT (2003) Molecular systematics of the Phyllachorales (Ascomycota, fungi) based on 18S ribosomal DNA sequences. Brazil Arch Biol Technol 46:315–322
Wang Z, Binder M, Hibbett DS (2002) A new species of Cudonia based on morphological and molecular data. Mycologia 94:641–650. doi:10.2307/3761715
Wang Z, Binder M, Hibbett DS (2005) Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological, and molecular studies. Am J Bot 92:1565–1574
Wang Z, Binder M, Schoch CL, Johnston PR, Spatafor JW, Hibbett DS (2006a) Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Mol Phylogenet Evol 41:295–312
Wang Z, Johnston PR, Takamatsu S, Spatafora JW, Hibbett DS (2006b) Toward a phylogenetic classification of Leotiomycetes based on rDNA data. Mycologia 98:1065–1075
Wang Z, Johnston PR, Yang Z-L, Townsend JP (2009) Evolution of reproductive morphology in leaf endophytes. PLoS One 4:e4246
Wang Z, Nilsson RH, Lopez-Giraldez F, Zhuang WY, Dai YC, Johnston PR, Townsend JP (2011) Tasting soil fungal diversity with earth tongues: phylogenetic test of SATè alignment for environmental ITS data. PLoS One 6:e19039
Weber RWS (2009) Recent developments in the molecular taxonomy of fungi. In: Anke T, Weber D (eds) The Mycota XV: physiology and genetics, 1st edn. Springer, Berlin, pp 1–15
Weir A, Blackwell M (2001) Molecular data support the Laboulbeniales as a separate class of Ascomycota, Laboulbeniomycetes. Mycol Res 105:1182–1190
Weir A, Hammond PM (1997) Laboulbeniales on beetles: host utilization patterns and species richness of the parasites. Biodivers Conserv 6:701–719
Wingfield M, Seifert K, Webber J (1993) Ceratocystis and Ophiostoma: taxonomy, ecology and pathology. American Phytopathological Society, St. Paul, MN
Xu JR, Zhao XH, Dean RA (2007) From genes to genomes: a new paradigm for studying fungal pathogenesis in Magnaporthe oryzae. Adv Genet 57:175–218
Zaffarano P, Duò A, Grünig CR (2010) Characterization of the mating type (MAT) locus in the Phialocephala fortinii s.l. – Acephala applanata species complex. Fungal Genet Biol 47:761–772
Zhang N, Blackwell M (2001) Molecular phylogeny of dogwood anthracnose fungus (Discula destructiva) and the Diaporthales. Mycologia 93:355–365
Zhang N, Blackwell M (2002) Molecular phylogeny of Melanospora and similar pyrenomycetous fungi. Mycol Res 106:148–155
Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B, Sung GH (2006) An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076–1087. doi:10.3852/mycologia.98.6.1076
Zhang N, Zhao S, Shen Q (2011) A six-gene phylogeny reveals the evolution of mode of infection in the rice blast fungus and allied species. Mycologia 103:1267–1276. doi:10.3852/11-022
Zhuang WY (1988) Studies on some discomycete genera with an ionomidotic reaction: Ionomidotis, Poloniodiscus, Cordierites, Phyllomyces and Ameghiniella. Mycotaxon 2:261–298
Zhuang WY, Yu ZH, Wu WP, Langue C, Fouret N (2000) Preliminary notes on phylogenetic relationships in the Encoelioideae inferred from 18S rDNA sequences. Mycosystema 19:478–484
Acknowledgements
We are grateful to Dr. Yu-Ming Ju for photographs of Xylaria globosa and Dr. Guohong Cai for photographs of Anisogramma anomala .
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Zhang, N., Wang, Z. (2015). 3 Pezizomycotina: Sordariomycetes and Leotiomycetes. In: McLaughlin, D., Spatafora, J. (eds) Systematics and Evolution. The Mycota, vol 7B. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-46011-5_3
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