Skip to main content

Cannabis_TREATS_cancer: Incorporating Fine-Grained Ontological Relations in Medical Document Ranking

  • Conference paper

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 496))

Abstract

The previous work has justified the assumption that document ranking can be improved by further considering the coarse-grained relations in various linguistic levels (e.g., lexical, syntactical and semantic). To the best of our knowledge, little work is reported to incorporate the fine-grained ontological relations (e.g., <cannabis, TREATS, cancer>) in document ranking. Two contributions are worth noting in this work. First, three major combination models (i.e., summation, multiplication, and amplification) are designed to re-calculate the query-document relevance score considering both the term-level Okapi BM25 relevance score and the relation-level relevance score. Second, a vector-based scoring algorithm is proposed to calculate the relation-level relevance score. A few experiments on medical document ranking with CLEF2013 eHealth Lab medical information retrieval dataset show that the proposed document ranking algorithms can be further improved by incorporating the fine-grained ontological relations.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Song, F., Croft, W.B.: A general language model for information retrieval. In: Proc. of CIKM 1999, pp. 316–321. ACM, New York (1999)

    Google Scholar 

  2. Matsumura, A., Takasu, A.: Adachi: The effect of information retrieval method using dependency relationship between words. In: Proceedings of RIAO 2000, pp. 1043–1058 (2000)

    Google Scholar 

  3. Vintar, S., Buitelaar, P., Volk, M.: Semantic relations in concept-based cross-language medical information retrieval. In: Proceedings of ECML/PKDD workshop on Adaptive Text Eextraction and Mining (ATEM) (2003)

    Google Scholar 

  4. Gao, J., Nie, J.Y., Wu, G., Cao, G.: Dependence language model for information retrieval. In: Proc. of SIGIR 2004, pp. 170–177. ACM, New York (2004)

    Google Scholar 

  5. Morton, T.: Using semantic relations to improve information retrieval. PhD thesis, University of Pennsylvania (2004)

    Google Scholar 

  6. Maisonnasse, L., Gaussier, E., Chevallet, J.P.: Revisiting the dependence language model for information retrieval. In: Proc. of SIGIR 2007, pp. 695–696. ACM, New York (2007)

    Google Scholar 

  7. Park, J.H., Croft, W.B., Smith, D.A.: A quasi-synchronous dependence model for information retrieval. In: Proc. of CIKM 2011, pp. 17–26. ACM, New York (2011)

    Google Scholar 

  8. Hou, Y., Zhao, X., Song, D., Li, W.: Mining pure high-order word associations via information geometry for information retrieval. ACM Trans. Inf. Syst. 31(3), 12:1–12:32 (2013)

    Google Scholar 

  9. Zhao, J., Huang, J.X., Ye, Z.: Modeling term associations for probabilistic information retrieval. ACM Trans. Inf. Syst. 32(2), 7:1–7:47 (2014)

    Google Scholar 

  10. Giger, H.P.: Concept based retrieval in classical ir systems. In: Proc. of SIGIR 1988, pp. 275–289. ACM, New York (1988)

    Google Scholar 

  11. Lu, X.: Document retrieval: A structural approach. Inf. Process. Manage. 26(2), 209–218 (1990)

    Article  Google Scholar 

  12. Khoo, C.S.G., Myaeng, S.H., Oddy, R.N.: Using cause-effect relations in text to improve information retrieval precision. Inf. Process. Manage. 37(1), 119–145 (2001)

    Article  Google Scholar 

  13. Li, Y., Wang, Y., Huang, X.: A relation-based search engine in semantic web. IEEE Trans. on Knowl. and Data Eng. 19(2), 273–282 (2007)

    Article  Google Scholar 

  14. Lee, J., Min, J.K., Oh, A., Chung, C.W.: Effective ranking and search techniques for web resources considering semantic relationships. Inf. Process. Manage. 50(1), 132–155 (2014)

    Article  Google Scholar 

  15. Bilotti, M.W., Elsas, J., Carbonell, J., Nyberg, E.: Rank learning for factoid question answering with linguistic and semantic constraints. In: Proc. of CIKM 2010, pp. 459–468. ACM, New York (2010)

    Google Scholar 

  16. Voorhees, E.M., Hersh, W.: Overview of the trec 2012 medical records track. In: Proc. of TREC 2012 (2012)

    Google Scholar 

  17. Goeuriot, L., Jones, G.J.F., Kelly, L., Leveling, J., Hanbury, A., Müller, H., Salanterä, S., Suominen, H., Zuccon, G.: Share/clef ehealth evaluation lab 2013, task 3: Information retrieval to address patients’ questions when reading clinical reports. In: CLEF Online Working Notes (2013)

    Google Scholar 

  18. Kilicoglu, H., Shin, D., Fiszman, M., Rosemblat, G., Rindflesch, T.C.: Semmeddb: a pubmed-scale repository of biomedical semantic predications. Bioinformatics 28(23), 3158–3160 (2012)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Xia, Y., Xie, Z., Zhang, Q., Wang, H., Zhao, H. (2014). Cannabis_TREATS_cancer: Incorporating Fine-Grained Ontological Relations in Medical Document Ranking. In: Zong, C., Nie, JY., Zhao, D., Feng, Y. (eds) Natural Language Processing and Chinese Computing. NLPCC 2014. Communications in Computer and Information Science, vol 496. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-45924-9_25

Download citation

  • DOI: https://doi.org/10.1007/978-3-662-45924-9_25

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-662-45923-2

  • Online ISBN: 978-3-662-45924-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics