Skip to main content

Computing Persistent Homology with Various Coefficient Fields in a Single Pass

  • Conference paper
Algorithms - ESA 2014 (ESA 2014)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 8737))

Included in the following conference series:

Abstract

This article introduces an algorithm to compute the persistent homology of a filtered complex with various coefficient fields in a single matrix reduction. The algorithm is output-sensitive in the total number of distinct persistent homological features in the diagrams for the different coefficient fields. This computation allows us to infer the prime divisors of the torsion coefficients of the integral homology groups of the topological space at any scale, hence furnishing a more informative description of topology than persistence in a single coefficient field. We provide theoretical complexity analysis as well as detailed experimental results. The code is part of the Gudhi library, and is available at [8].

This research has been partially supported by the European Research Council under Advanced Grant 339025 GUDHI (Algorithmic Foundations of Geometric Understanding in Higher Dimensions).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Boissonnat, J.-D., Dey, T.K., Maria, C.: The compressed annotation matrix: An efficient data structure for computing persistent cohomology. In: Bodlaender, H.L., Italiano, G.F. (eds.) ESA 2013. LNCS, vol. 8125, pp. 695–706. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  2. Boissonnat, J.-D., Maria, C.: Computing persistent homology with various coefficient fields in a single pass. RR-8436, INRIA (December 2013)

    Google Scholar 

  3. Carlsson, G., Ishkhanov, T., Silva, V., Zomorodian, A.: On the local behavior of spaces of natural images. Int. J. Comput. Vision, 1–12 (2008)

    Google Scholar 

  4. Cohen-Steiner, D., Edelsbrunner, H., Harer, J.: Stability of persistence diagrams. Discrete & Computational Geometry 37(1), 103–120 (2007)

    Article  MATH  MathSciNet  Google Scholar 

  5. Edelsbrunner, H., Harer, J.: Computational Topology - an Introduction. American Mathematical Society (2010)

    Google Scholar 

  6. Fürer, M.: Faster integer multiplication. SIAM J. Comput. (2009)

    Google Scholar 

  7. Von Zur Gathen, J., Gerhard, J.: Modern Computer Algebra, 2nd edn. Cambridge University Press, New York (2003)

    MATH  Google Scholar 

  8. Maria, C.: Gudhi, simplex tree and persistent cohomology packages, https://project.inria.fr/gudhi/software/

  9. Martin, S., Thompson, A., Coutsias, E.A., Watson, J.: Topology of cyclo-octane energy landscape. J. Chem. Phys. 132(23), 234115 (2010)

    Google Scholar 

  10. Munkres, J.R.: Elements of algebraic topology. Addison-Wesley (1984)

    Google Scholar 

  11. Rosser, J.B., Schoenfeld, L.: Approximate formulas for some functions of prime numbers 6, 64–94 (1962)

    MATH  MathSciNet  Google Scholar 

  12. Zomorodian, A., Carlsson, G.E.: Computing persistent homology. Discrete & Computational Geometry 33(2), 249–274 (2005)

    Article  MATH  MathSciNet  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Boissonnat, JD., Maria, C. (2014). Computing Persistent Homology with Various Coefficient Fields in a Single Pass. In: Schulz, A.S., Wagner, D. (eds) Algorithms - ESA 2014. ESA 2014. Lecture Notes in Computer Science, vol 8737. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-44777-2_16

Download citation

  • DOI: https://doi.org/10.1007/978-3-662-44777-2_16

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-662-44776-5

  • Online ISBN: 978-3-662-44777-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics